BGIOSGA023552

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Revision as of 13:34, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA023552| Description = cDNA clone:J033109K01, full insert sequence| Definition = Oryza sativa Indica Group BGIOSGA023552, complete gene.| ta...")
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Gene Name

BGIOSGA023552

Description

cDNA clone:J033109K01, full insert sequence

Definition

Oryza sativa Indica Group BGIOSGA023552, complete gene.

LocusTag

P0468G03.18

Ensembl Transcript ID

BGIOSGA023552-TA

Ensembl Protein ID

BGIOSGA023552-PA

Length

6850

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:31279638..31286487

Sequence Coding Region

31279638..31279828,31281102..31281311,31281779..31281923,31282008..31282402,31282573..31282668
,31282879..31282951,31283199..31283484,31284231..31284556,31285238..31285505
,31285682..31285962,31286072..31286127,31286163..31286487

Genome Context

<gbrowseImage1> name=IndicaChromosome06:31279638..31286487 source=RiceIndica06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome06:31279638..31286487 source=RiceIndica06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTCGCCGACGACCACGTCCGCGGCGGCGTTGGCCCCCATCGCCGGAGCAATGGAGCATCCAGTTCTACGGTCCCCGACACTTGTTCCTCGTCAATGGCAAGAGTCCAAAACCTACCGCACCTCTAGACTCCAGGGGGCCCACCACCCGCTACTGCCATCTGGGACCCACATCCGCGGATGTGGGCCCACATTCTGTGGTGTGGCAATTCGGATATTGCTGAAGATGAAGGTGCTTGAGCTCGCGTGTTTGCTTCTTATCATTGTACCACAAGTGGTTCTTGGAACACATGATGTGTACATTGTTACAATGGAAGGCGAACCTGTTGTCAGCTACAGAGGTGGAGTTGAAGGATTCCCTGCAACCGCCATAGATTTGGATGAAGATATGGAAATTACCAGTGAGGCTGTGACTTCATACTCACTCCACCTACGAAGGTACCATGACAAGCTTCTAGACTCACTTTTGGTAGAAGGAACTTATGAGAAGCTTTATAGCTACCATCATCTTATTAATGGTTTTGCAGTACACATGTCACCCTTACAGGCTGAATTCCTAAGGAAAGCCCCAGGAGTAAAGCATGTGGAGAGAGATATGAAGATACAGAAATTGACAACACACACTCCACAATTTCTTGGATTGCCAACAGGGGTATGGCCAACGGGTGGTGGCTTCGATAGAGCTGGTGAAGATGTTGTGATTGGCTTTGTGGATTCAGGAATTTACCCCCAACATCCAAGCTTCTCTGCCCACAAAACTGATCCTTTTGGGCCTGTTCCTCATTACAAGGGGAAATGTGAGATGGATCCAGTAACAAGAAGAAGCTTTTGTAATGGGAAGATAGTTGGTGCCCAGCATTTTGCAAAAGCTGCAATTGCTGCTGGAGCGTTTAATCCTGATGTCGATTTTGCATCTCCATTAGATGGCGATGGCCATGGAAGTCATACAGCAGCAATTGCTGCTGGAAATAATGGGATTCCAGTACGAATGCATGGTCATGAATTTGGCAAAGCAAGTGGTATGGCTCCACGTGCTAGGATAGCCGTGTACAAAGTCCTTTACAGGCTTTTTGGTGGTTATGTATCTGATGTTGTTGCAGCCATTGATCAGGCTGTGCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGCCCAAATAGCCCGCCAACTGCTACGCGGACTACATTTTTGAATCCTTTTGATGCTGCACTTCTTTCCGCTGTGAAAGCTGGGGTGTTTGTTGCCCAAGCAGCAGGAAATGGAGGACCATTTCCGAAAACACTGGTATCATTCAGCCCATGGATAACCACTGTTGCTGCTGGAGTTGATGACCGCAGATACAAAAATCATTTGGTGCTAGGAAATGGGAAACTTCTTCCTGGACTTGGTGTATCACCTGCAACCCATGAGAATAAATCATTCAGCCTGATTTCTGCGGCTGATGCTCTGCTGGGTTCATCTGCCACCAAGTACAGTGCATTAGATTGCCAAAGGCCAGAACTCTTGAATAAGAGGAAAATTCAGGGCAAAATTCTTTTGTGTGGATATTCTTTCAACTATATTTCTGGGACAGCTTCTATCAAGAAAGTGTCAGAGACTGCTAGGAGTCTTGGTGCAGCTGGTTTTATTGTTGCTGTGGAGAATAGTTACCCAGGAACAAAATTTGATCCTGTACCTGTCAGCATGCCTGGTATTCTCATCACAGATGTCAGCAGAACAAAGGATCTTATAGACTACTACAACTCTTCTACAATAAGAGATTGGGCAGGAAGGGCCACGACCTTCCAAGCAACAGCAGCTATTGCAGATGGTTTGGCACCAACTCTATACAACTCTGCCCCCCAGGTTGCCTTGTTCTCTTCTCGAGGACCGGATGTAAAAGATTTTAGCTTTCAAGATGCTGATGTTCTAAAGCCTGATATACTCGCTCCTGGCAATCTTATATGGGCAGCATGGGCGCCTAATGGAACTGATGAAGCCAATTATGCTGGGGAAGGATTTGCAATGGTTTCTGGAACTAGTATGGCTGCACCACATATTGCTGGTATCGCGGCACTAATAAAACAGAAGAACCCCAAGTGGAGTCCCTCAGCAATAAAATCTGCCTTGATGACTACATCTAATACATTGGACAAGGGGAGCCATCCTTTAAGAGCACAACAGTACTCTACATCAGAAATTATGACACTTACACGGGCCACGCCGTTTGATTATGGCAGTGGCGCCGTTAACCCAAAAGCCGCTCTGGATCCTGCCTTGTTCTGGATGCAACTCATCAAGATTACATCACATTTTTGTGTTCGATCCCTGACGTGGAACACAGTGAACTCCAAGGTGCAGCAGCGCCCCTATGATCTCAACATCCCCTCAATCACCATCTCCCAGCTTAGAGGCACGCAGACGGTGAAGCGGACAGTTACAAGCGTGGCCGCCGAGGCCGAAACCTACACCATCATGACAAGAATGTCGCCGGAGATCGCGCTGGAGGTCTCACCTCCGGCGCTGACAGTGCTCCCCGGCGCATCGAGAGAGATAACGGCGACCCTCACGGCCAGGTCAGTGACTGGCACCTACAGTTTTGGAGAGATCACCATGAAAGGGGACCGAGGTCACCTTGTGAGAATCCCAGTGGTAGCTATGGGATTTAAGTAG</cdnaseq>

Protein Sequence

<aaseq>MSPTTTSAAALAPIAGAMEHPVLRSPTLVPRQWQESKTYRTSRLQGAHHPLLPSGTHIRGCGPTFCGVAIRILLKMKVLELACLLLIIVPQVVLGTHDVYIVTMEGEPVVSYRGGVEGFPATAIDLDEDMEITSEAVTSYSLHLRRYHDKLLDSLLVEGTYEKLYSYHHLINGFAVHMSPLQAEFLRKAPGVKHVERDMKIQKLTTHTPQFLGLPTGVWPTGGGFDRAGEDVVIGFVDSGIYPQHPSFSAHKTDPFGPVPHYKGKCEMDPVTRRSFCNGKIVGAQHFAKAAIAAGAFNPDVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGKASGMAPRARIAVYKVLYRLFGGYVSDVVAAIDQAVQDGVDILNLSVGPNSPPTATRTTFLNPFDAALLSAVKAGVFVAQAAGNGGPFPKTLVSFSPWITTVAAGVDDRRYKNHLVLGNGKLLPGLGVSPATHENKSFSLISAADALLGSSATKYSALDCQRPELLNKRKIQGKILLCGYSFNYISGTASIKKVSETARSLGAAGFIVAVENSYPGTKFDPVPVSMPGILITDVSRTKDLIDYYNSSTIRDWAGRATTFQATAAIADGLAPTLYNSAPQVALFSSRGPDVKDFSFQDADVLKPDILAPGNLIWAAWAPNGTDEANYAGEGFAMVSGTSMAAPHIAGIAALIKQKNPKWSPSAIKSALMTTSNTLDKGSHPLRAQQYSTSEIMTLTRATPFDYGSGAVNPKAALDPALFWMQLIKITSHFCVRSLTWNTVNSKVQQRPYDLNIPSITISQLRGTQTVKRTVTSVAAEAETYTIMTRMSPEIALEVSPPALTVLPGASREITATLTARSVTGTYSFGEITMKGDRGHLVRIPVVAMGFK</aaseq>

Gene Sequence

<dnaseqindica>1..191#1465..1674#2142..2286#2371..2765#2936..3031#3242..3314#3562..3847#4594..4919#5601..5868#6045..6325#6435..6490#6526..6850#ATGTCGCCGACGACCACGTCCGCGGCGGCGTTGGCCCCCATCGCCGGAGCAATGGAGCATCCAGTTCTACGGTCCCCGACACTTGTTCCTCGTCAATGGCAAGAGTCCAAAACCTACCGCACCTCTAGACTCCAGGGGGCCCACCACCCGCTACTGCCATCTGGGACCCACATCCGCGGATGTGGGCCCACGTAAGCAGTTTCCATTTGCGACGAAGGACACGGTCCATGGACCGGGAGACACTGGCATGTGGGGCCCACTAGGGCTGGTCCACGTGAGCCGCATGCGCCACGTATCACGCGAAAAAAAACAAAAAAAAAAGGAAAAAAAGAAGAGGGAATTTGAGGTTCCTTGCTTGGTTGCCTCCTCCATTAAAGACAACAAAAGCAACGCCATCAGCACACACCTCCACTCCACTCCACTCTCCCACCACTCTCGCTTCCCGAGGCGCGCAAACCCTAGCCTCGTCGCGCCGCGCCGCATCCTCCTCCTCCCCCCGCCTGAGTAGCGCCGCCGCATGCGGCTGCGCGAGGCGCGGCGAAGCGACTGACGGGGGGTGATCCGCCGCTTTCGGGGGCTGATCGAGGCGGGAGGAGGAGCGGCGGCGCCGGGGAATGCCCGACCTCTCAGGCGATCTCCTTCGTGGTTTTTGGTAATAATAAACAGGTTTGTTCATCTCTCGTTTTACATTTTTCTTTCTCTCCGTGACGCGCGTTTTTTTTTTTGCTGTTCCTCTTTTGGTGGTTTACCTGGTAATAGAGCTAAGCTACAGTAGGATAAAGGACCATACTGTTTAGAGATTCCTTTTGCCAATTTTTAAATTTTTTCATCGGTATTTTGTTTGAAGGAAAACCTTTTTTTTCCTTCTTTTAGTTTTGGCTGTATTTTTTACCAGATGATGATATTATTCATATTGATCTTTGATTTTGTTGTTTCACCCTTTTTTAGCAGCTTGCAGTATTGGTTACAGTGAGAGAATATTTGTTCAGCCTGTTCTAGTAGATCTTAACTCATGCTTGATCCTTTAGCAAAGTGGTATAAATTTTTAGTTTCATTTCAAAATCAATCTGTTCTAAAGAAAATGCAGCTATTAAAATGCATACGGAGTACACACAGACTAGCCGTTTACAGTACGCTATATTGTAGTGTAGACTGTAGAGTATAATCGTTCTGAAGAGCCATTTAATGTCATCGGCCGCCCTAATTTAATAAGGTTCCGTAAATGCGTGCTCCATGAGAGGCTTGTGAGGTGGGCAACTCCAGTATCACAAAGAAATTGTGGGCACTGCCGGGACCAGTAGTGGATGACTAGGGTAGTGAGTGATTTTACTCAGTCAGTAGTGCAGTCCTGTACTCCTGTTGTTGTTGTACTCTTGACTCTCCCAAACCATCAAATTGATGTCTAGTGTCATGCATACTTGTAACTTGTAAGTGCACTTCCCTGACAGTTCCATTCTTTGGAAGATTCTGTGGTGTGGCAATTCGGATATTGCTGAAGATGAAGGTGCTTGAGCTCGCGTGTTTGCTTCTTATCATTGTACCACAAGTGGTTCTTGGAACACATGATGTGTACATTGTTACAATGGAAGGCGAACCTGTTGTCAGCTACAGAGGTGGAGTTGAAGGATTCCCTGCAACCGCCATAGATTTGGATGAAGATATGGAAATTACCAGGTAGTTTACTATAGATGATGTTTTTTCACCATGCCTTCGAACATTTATTTTGTGTTGGCTGACTCTTGGTGAATTTGTGGAGTCTATGTTGGGTTGCATGGCATATTGGACTTGTTAGTTCTTATTGTTGAATTGCATTTCACATGTCTTGTTGCACTTGGAGCTTGCTACTGAGGAAGTGCACCTCCTAAATGTTTCTTGAAATGGATTCCATTTTCTTCCCATTATGATATATCATATATGTAGTGTGTGAGGTTTGAGCTGTTAAGAGTCTTCCAACATGTTAAGAATATCTGCTCGAAAGCCTTCATTAGAAAAAAAAAGGTCACCACTGTTACTGTCTTTCAGCTCTCTGATATTGAAATTGATTATCCCCCCATTAAGTTTTTAATCACAGCTTGCTTGTATTTGTGGAGTTGTGGTGGAAACATGACAATTTTGTATATGTTCCAATTTACTGATTTCAGTGAGGCTGTGACTTCATACTCACTCCACCTACGAAGGTACCATGACAAGCTTCTAGACTCACTTTTGGTAGAAGGAACTTATGAGAAGCTTTATAGCTACCATCATCTTATTAATGGTTTTGCAGTACACATGTCACCCTTACAGGTATTTAGCATTTTTATATCTTTTCTTCTTTCCTGGTTTAAGATTATTATCTTGGCTGAACACAGCAATCTTTCACTGTGTTAGGCTGAATTCCTAAGGAAAGCCCCAGGAGTAAAGCATGTGGAGAGAGATATGAAGATACAGAAATTGACAACACACACTCCACAATTTCTTGGATTGCCAACAGGGGTATGGCCAACGGGTGGTGGCTTCGATAGAGCTGGTGAAGATGTTGTGATTGGCTTTGTGGATTCAGGAATTTACCCCCAACATCCAAGCTTCTCTGCCCACAAAACTGATCCTTTTGGGCCTGTTCCTCATTACAAGGGGAAATGTGAGATGGATCCAGTAACAAGAAGAAGCTTTTGTAATGGGAAGATAGTTGGTGCCCAGCATTTTGCAAAAGCTGCAATTGCTGCTGGAGCGTTTAATCCTGATGTCGATTTTGCATCTCCATTAGATGGCGATGGCCATGGAAGGTCATGCTCCTAATTAATATATGTTCTGTTCTAGTTTCTTATACCAAGAAAAATGCCATACATGAAAATTGTTCTGTCCAAAGAATTAGCTATTCTGGTTGTGTTTCATCTTGAGAAGAATGGTATGACTTATCTAGTTATCTGATACAAAGATGCTTTCCCTTAAACAGTCATACAGCAGCAATTGCTGCTGGAAATAATGGGATTCCAGTACGAATGCATGGTCATGAATTTGGCAAAGCAAGTGGTATGGCTCCACGTGCTAGGTAAGTTTCCATTTCTTCAGCATTTTCTAATTTCAAGATCTCATTGAACAACTAAGAATAATGCACAAAAATCACCTCAATGAATGTGAGCCTTGTGCTAGTGGAATTCACTTCCTTCTATCTTGCCGTTATTGTTAATCAATATCTATTATTCCCCTTTGCTTTTGCTCTCCTTCCGGATTGTGATTTTCCTGAGTTTGTGATTGACAGGATAGCCGTGTACAAAGTCCTTTACAGGCTTTTTGGTGGTTATGTATCTGATGTTGTTGCAGCCATTGATCAGGTATAACATATGAGTTACTTATCTGAATTTCTTTCCACTGTAATGCAGGTGCTGCCATGTTAGTACTTAGTACCTGACAATAGTGACTCAAAACAATTATTTCTGGAATCTGCCATAGTAGTTGTTTTCTTCATAGACTATTGCAGAAATGAGTGAAACAACATCTGCCAGTTATGTAATGCATGTCACTATCACAAGCCTTCAATATGTAGGAACTAATGCATGGATGGCAATCTGCATTTTGCAGGCTGTGCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGCCCAAATAGCCCGCCAACTGCTACGCGGACTACATTTTTGAATCCTTTTGATGCTGCACTTCTTTCCGCTGTGAAAGCTGGGGTGTTTGTTGCCCAAGCAGCAGGAAATGGAGGACCATTTCCGAAAACACTGGTATCATTCAGCCCATGGATAACCACTGTTGCTGCTGGAGTTGATGACCGCAGATACAAAAATCATTTGGTGCTAGGAAATGGGAAACTTCTTCCTGGACTTGGTGTATCACGTAAGTTCTGTTTATTCATGTATTTTAGCTCAAATTTTGGTTTTCTATTACTACATGTATGGTATATGCATTCATGGGCAACAAAAATTGTACAAAATGAATTAAAATGACCTAAGCTAAGTGGCCTACCTTTTAACTTTGCCCCCCCCCCCCCCCAAAAAATAAATAAATAAATAAAAATCACTCAATGTTGTTGTCTGCACTTAGGGTGTGTTCGGAACCCCTGGTTCCCAACACTAAGTGCCCGCACGGAAACGGAGCAGCGATTAGCGGGTGATTAATTAAGTATTTACTATTTTTTTTTTCAAAAATGGATTAATTTGATTTTTTTAAGCAACTTTCGTATAGAAACATTTTGCAAAAAAGCACCGTTTAGCAGTTTGAAAAGCGTGCACGCGGAAAACGAGGGAGATGGGTTGGGAAGAGGGGCTGCCGAACACAGCCTTAGAGAAGTATGAATGATAGGGCAGCATCAGCTGCACTTGATTTTTTTTGTTATGTAGGGTGTAGGACTGTAGGTAGATCTTTATACAAAATTGTGTTTTTTTTATCTCATTGTGAAAATACTTTGTGTGAAAGAGACAATCCTCTGTTTTTCTTCCTTTGTAATTCCACTGTCATATGTTACTGCATCCCATAGCAAATATGTTACTAGATTGCAATCATGTCAACAAATGCAGGCAATCTGACAGTTACATAGAAATTTCTACTTGTGGTTAATTTACAGTTTTCTCATTTGGCTACAGCTGCAACCCATGAGAATAAATCATTCAGCCTGATTTCTGCGGCTGATGCTCTGCTGGGTTCATCTGCCACCAAGTACAGTGCATTAGATTGCCAAAGGCCAGAACTCTTGAATAAGAGGAAAATTCAGGGCAAAATTCTTTTGTGTGGATATTCTTTCAACTATATTTCTGGGACAGCTTCTATCAAGAAAGTGTCAGAGACTGCTAGGAGTCTTGGTGCAGCTGGTTTTATTGTTGCTGTGGAGAATAGTTACCCAGGAACAAAATTTGATCCTGTACCTGTCAGCATGCCTGGTATTCTCATCACAGATGTCAGCAGAACAAAGGTACTACCTCCGTCCCAAAATGTAGCTATTTTTAGCACAGTACTTTGTCCCAAAATGAAGCTATTTTTCTACCTACCTTCTCCTCTCAACCAATCACAACCATTCTTTTTCACCTACTTTCTCTTTTCAACCAATCACACACCTTCTTCAATCATTCTCACCTACTTTCTTAATACCCGTGCCAACCTAAAAAATGCTTACATTTTGGGACGGAGGAAGTATTGCATCCCCAAAAGTGTCAGTGTGTAGATATCATGGATGCCATCTGTAGGCAGAACACCATGAGTGGAGTATTGAAAAGCTGCAGATTCTAATGTTTTTTCTTTTATCTGGAATGTTTTTCTTTTATCTGGCTACGTCTTATGTAAACATGAACTAGAAAAAACTATTTATGTAGCGTAGTGGATTGTATAGCTCTTGTGTAACCATCCATCTAGTTTTGGTGTCTGTTCAGTGCCCACAAACTATTCTCGTATAGTTGTCTTCTTTTTTAGTCGAGCTACTCTCAGAAAGTCAGTCCCCTAGAATGTACATGCTTCAAGAGCAGTGACATGAATTGTATATGCCTGCTATTGTAGGATGACATGATAATTGAATAGTAGGGAAAACCTATGCATGTTAGTTAGATAATACGTTTTTTTTTTTTGATATAGTCAGGTGACATTAGTTTTGGTTCTGTAGGATCTTATAGACTACTACAACTCTTCTACAATAAGAGATTGGGCAGGAAGGGCCACGACCTTCCAAGCAACAGCAGCTATTGCAGATGGTTTGGCACCAACTCTATACAACTCTGCCCCCCAGGTTGCCTTGTTCTCTTCTCGAGGACCGGATGTAAAAGATTTTAGCTTTCAAGATGCTGATGTTCTAAAGCCTGATATACTCGCTCCTGGCAATCTTATATGGGCAGCATGGGCGCCTAATGGAACTGATGAAGCCAATTATGCTGGTAAGCTTTGCTGTACTTTTATATCCCTTGAAGCATACAAAGCTTTTTAAGCATGTTATGGTTGCATTGAAATTTTCCTTGCATGTTTGATTGTTCTATGTGGTAATTCATATGGACGTTTGTCAATCATGTGGCTTACCTAAAATATATTTCTCTTGTGGCAATGCATATTCCAGGGGAAGGATTTGCAATGGTTTCTGGAACTAGTATGGCTGCACCACATATTGCTGGTATCGCGGCACTAATAAAACAGAAGAACCCCAAGTGGAGTCCCTCAGCAATAAAATCTGCCTTGATGACTACATCTAATACATTGGACAAGGGGAGCCATCCTTTAAGAGCACAACAGTACTCTACATCAGAAATTATGACACTTACACGGGCCACGCCGTTTGATTATGGCAGTGGCGCCGTTAACCCAAAAGCCGCTCTGGATCCTGCCTTGTTCTGGATGCAAGTAAGTTAAATTTTTCGTATGCAATTTTTTAATAAATTCAAACTGCTCCATGTTATTCAGACAATAATCTGAAGACCATTCTAAGTTTGAATTTTTTTTTTGTTGGCAGCTCATCAAGATTACATCACATTTTTGTGTTCGATCCCTGACGTGGAACACAGTGAAGTATCAAACATAACTGGTTCAACTTGCAGCTCCAGCTCCAAGGTGCAGCAGCGCCCCTATGATCTCAACATCCCCTCAATCACCATCTCCCAGCTTAGAGGCACGCAGACGGTGAAGCGGACAGTTACAAGCGTGGCCGCCGAGGCCGAAACCTACACCATCATGACAAGAATGTCGCCGGAGATCGCGCTGGAGGTCTCACCTCCGGCGCTGACAGTGCTCCCCGGCGCATCGAGAGAGATAACGGCGACCCTCACGGCCAGGTCAGTGACTGGCACCTACAGTTTTGGAGAGATCACCATGAAAGGGGACCGAGGTCACCTTGTGAGAATCCCAGTGGTAGCTATGGGATTTAAGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA023552

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