BGIOSGA024772

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Revision as of 06:18, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA024772| Description = cDNA clone:J013118L17, full insert sequence| Definition = Oryza sativa Indica Group BGIOSGA024772, complete gene.| ta...")
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Gene Name

BGIOSGA024772

Description

cDNA clone:J013118L17, full insert sequence

Definition

Oryza sativa Indica Group BGIOSGA024772, complete gene.

LocusTag

OS07G0163000

Ensembl Transcript ID

BGIOSGA024772-TA

Ensembl Protein ID

BGIOSGA024772-PA

Length

6491

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:3256682..3263172

Sequence Coding Region

3262928..3263172,3262751..3262844),complement(3262562..3262662,3262373..3262421),complement(3261775..3261867
,3261358..3261497),complement(3260790..3260826,3260650..3260711),complement(3260391..3260487
,3259822..3259896),complement(3259355..3259463,3258627..3258736),complement(3258322..3258384
,3257650..3257729),complement(3257304..3257434,3257179..3257228),complement(3256682..3256801

Genome Context

<gbrowseImage1> name=IndicaChromosome07:3256682..3263172 source=RiceIndica07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome07:3256682..3263172 source=RiceIndica07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCACCGCCGCCGCCGCGCTCCTCCGCCTCTCCCGCTCCCGCCGCCCGCTCCTCCCCCTCTCCTCCCTCCGCCTCCCGCCTCCCGCCCCGTACCACCACCACTCCCACTCCCAAACCCCACCCTCCTCCTCCTCCTCCTCCTCCCACGCCCGCCTCCCCGCCTTCCTCTCCTTCCTCGCCGCCGCCGCCGCCGCCGCCGGAGGAACGACCGTCGCCCTCTGCGACTCCGGCATCGACCACCGGGTCGGGGGCAAGGAGAGCACCGAGCTGGTGGTGCGCGGGGAGCGGAAGCGCGTGCCCAACGAGTTCATCGACGAGCTCGCTTCCTTCCTCGGGGAGAACCTGACGGTGGACTACGAGGAGAGGCACTACCATGGCACGCCGCAGAACAGCTTCCACAAGGCAGTCAATGTGCCCGATGTCGTCGTCTTCCCGAGGTCCCAGGATGAGGTACAGAAGATTGTGATGGCTTGTAACAAGTACAAGGTGCCAATTGTACCATATGGTGGGGCTACATCAATTGAGGGTCACACGTTGGCACCTCATGGTGGTGTTTGCATTAACATGTCTTTGATGAAGTTTGCTTTAAATCGTTCACAGAAAATCAAATCCCTGCATGTTGAGGATATGGATGTAGTTGTTGAACCAGGAGTTGGATGGATTGAGCTGAATGAGTACCTGAAACCATATGGCCTCTTTTTCCCTCTTGACCCAGGCAAGTACGGAACAATGCGGGACAATGTGATTAACCTCCAGGCTGTTCTACCTAATGGTGATGTTGTCAAGACGGGTTCTCGAGCCCGAAAGAGTGCAGCTGGATACGATCTTGCTCGTTTGATCATTGGAAGTGAAGGAACTTTAGGGGTAATTACAGAAGTGACTGTACGTCTTCAAAAGCTTCCATCTCATTCCGTGGTTGCAATGTGCAATTTTCAAACAATTAAGGATGCTGCTGATGTTGCTATTGCAACAATGCTTTCTGGTATACAGGTCTCAAGAGTGGAATTGTTGGATGAGGTTCAGATAAGGGCAATTAACATGGCAAATGGTAAAAACTTACCTGAAGTACCAACCTTGATGTTTGAATTCATAGGGACAGAAGCCTATGCTCTTGAACAAACACTATTGGTTCAAAAGATTGCCACAGAACACCATGGATCTGATTTTGTTTTTGTAGAAGAGCCGGATGCTAAAGAGGAGTTATGGAAGATTAGGAAGGAAGCACTTTGGGCCGGTTTTGCCATGAAACCTGATCATGAGGCTATGATAACGGATGTTTGTGTTCCTTTGTCTAGACTTGCAGAATGCATATCTGTCTCAAAGGAAAAGCTTGATGCATCACCATTGACTTGTTTGGTTATCGCTCATGCTGGTGATGGAAACTTCCACACAATAATCCTATTTGACCCTAGTCAAGAAGACCAACGACGTGAAGCGGAGAGGCTAAACCATTTCATGGTTCATACTGCTCTCTCTATGGAAGGTACCTGTACAGGAGAGCATGGTGTAGGTACAGGGAAAATGAAGGCAAGTTACCTAGAGAAAGAGCTGGGCATCGAGTCGCTAAGGACGATGAAAAGAATAAAGGCTGCGTTGGATCCCAACAATATCATGAATCCAGGGAAACTGATTCCACCTCATGTCTGCATTTGA</cdnaseq>

Protein Sequence

<aaseq>MATAAAALLRLSRSRRPLLPLSSLRLPPPAPYHHHSHSQTPPSSSSSSSHARLPAFLSFLAAAAAAAGGTTVALCDSGIDHRVGGKESTELVVRGERKRVPNEFIDELASFLGENLTVDYEERHYHGTPQNSFHKAVNVPDVVVFPRSQDEVQKIVMACNKYKVPIVPYGGATSIEGHTLAPHGGVCINMSLMKFALNRSQKIKSLHVEDMDVVVEPGVGWIELNEYLKPYGLFFPLDPGKYGTMRDNVINLQAVLPNGDVVKTGSRARKSAAGYDLARLIIGSEGTLGVITEVTVRLQKLPSHSVVAMCNFQTIKDAADVAIATMLSGIQVSRVELLDEVQIRAINMANGKNLPEVPTLMFEFIGTEAYALEQTLLVQKIATEHHGSDFVFVEEPDAKEELWKIRKEALWAGFAMKPDHEAMITDVCVPLSRLAECISVSKEKLDASPLTCLVIAHAGDGNFHTIILFDPSQEDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKASYLEKELGIESLRTMKRIKAALDPNNIMNPGKLIPPHVCI</aaseq>

Gene Sequence

<dnaseqindica>1..245#329..422#511..611#752..800#1306..1398#1676..1815#2347..2383#2462..2523#2686..2782#3277..3351#3710..3818#4437..4546#4789..4851#5444..5523#5739..5869#5945..5994#6372..6491#ATGGCCACCGCCGCCGCCGCGCTCCTCCGCCTCTCCCGCTCCCGCCGCCCGCTCCTCCCCCTCTCCTCCCTCCGCCTCCCGCCTCCCGCCCCGTACCACCACCACTCCCACTCCCAAACCCCACCCTCCTCCTCCTCCTCCTCCTCCCACGCCCGCCTCCCCGCCTTCCTCTCCTTCCTCGCCGCCGCCGCCGCCGCCGCCGGAGGAACGACCGTCGCCCTCTGCGACTCCGGCATCGACCACCGGTGCTCGCCCGCCCACCCGCCCCCACACCGATCGCTCAGTCGATCCCGCGGTTGCGTATTGACGCGTTGCTTTTGTTCTGCAGGGTCGGGGGCAAGGAGAGCACCGAGCTGGTGGTGCGCGGGGAGCGGAAGCGCGTGCCCAACGAGTTCATCGACGAGCTCGCTTCCTTCCTCGGGGTGATGAGCTCGTGGCCTTTTCAGTGAGGATGCTTTCGCCGTTGAGGTGAGCTGAGCTGAGCTGACTGCTAAGTGTCCGTCCTCGCAGGAGAACCTGACGGTGGACTACGAGGAGAGGCACTACCATGGCACGCCGCAGAACAGCTTCCACAAGGCAGTCAATGTGCCCGATGTCGTCGTCTTCCCGAGGTATAACCTGATCTAACAGTAGTACTGATTACTGAATAGTGATAGATACTGATTGATACCAAAGTTCGTCTTGTGGGGTTATGTGTTGACCTTGTCCTTCTCTCAGAGATTGTAATGCCGGCCCAAATCAAATTTTGCAGGTCCCAGGATGAGGTACAGAAGATTGTGATGGCTTGTAACAAGTACAAGGTATGTCTCATTAATGCAAACACGGTGCGAATCTTTTGCATTTTTCTTTAGAAAGAGCCGCATCAGTTATCCGTCTGCTAGACTTTACTACATTTGATTGTGTGAATTGTGAAAATCCACTTTCTATCACACTATGCTGAGCTAGATTTTTATATTTCAGATTTCAGACTAATTTTATTGGTTGTTTTAGTTTACATGACCTTGGTACTGCTGCTAATCACGTGTGATGTAACGAATCTTTCTGGCTTCTCGTTTTTCTCGTCTGACTCTTGTACTTTGTTACACGTGCCATTTAAAATCTGTTTAGAAAATTGGAAATCAATTTTCACCTTGAGAATGCCATATTCTCAGTAAAGGAATTCTTTACCTTCATTTGCTGTCTCCAGCAATAGTCTATAAAAGGAGCAGACAGTGTGGATGTCTCCCAATGTTTTCATGATGGCTAATTACTTGTATGAGGGTTCCACTATAGAACTGAATGATGATGCCTTTTTCTTCGAGACAGGTGCCAATTGTACCATATGGTGGGGCTACATCAATTGAGGGTCACACGTTGGCACCTCATGGTGGTGTTTGCATTAACATGTCTTTGATGAAGGTAAACATTGATAAATGTAACTAGAGACCATATAGTTGTAGACACTAATAATTTCGTGGAAATTAAATCTTTCTGAATTAATTACCCTTGTTTCTAATCCTTAAAAGGTGCTTCAGTATATGTTCCATCAATTTCTTTTTACCATGGTTTGATTGTTTGATACTACTTCCATATGCCAAACAGACAAAACTGTTACTAGCAGTGAGCTCTTGATGCAGGATAGATGAGACGATACAAAGCTGTTTCTCTGTTAATTTCACTTTCTTCTAATTTGTAGTTTGCTTTAAATCGTTCACAGAAAATCAAATCCCTGCATGTTGAGGATATGGATGTAGTTGTTGAACCAGGAGTTGGATGGATTGAGCTGAATGAGTACCTGAAACCATATGGCCTCTTTTTCCCTCTTGACCCAGGCAAGTCCATTGTTTATTGTTTACGTGAAACATAATCTGTCCACTAACTTTGACATAAAACAGTATGAATTTGTACTGGATGTCATTTGGTTGCTGCTAACTAAATTTAGTTTCTGATAATTTTGTTTAACTTTCTTGCATCGTCTAGACATTTGGGTGATATGTACATCTTTGTGCCTGTGATAACATGACATGCAGCATATTCGTCCAACTTCACCCATCCTTTTGGGCATTTGGTAACATGATATGAAGCATAATTTTGTGCTAGATCGGTGGTTTAGCTCAAGTATTCTTATCTGATTTGCAGGGCCTGGGGCCACTATTGGAGGAATGTGTGCTACTCGCTGTTCTGGTTCACTAGCTGTGAGGTAATTCTCCTTATATTTCTCAGGGTACTTTCGAGCTTTTATAGTGAAACGGTCCACCCCATCGAAAAATAATGTACAACTGTAATCCACGTGATGGTGCATTCTTTTATGGTTATCTTTATGATTTACTGTTAAATGGCTTTGATGATTTGCTTATTAGTTTGTAGGTACGGAACAATGCGGGACAATGTGATTAACCTCCAGGTTCTTTTGGCTATCCTTGAGTGAGCTATTTTCAATTGACTTTCACATACAAATAGTAAAATTTTCTCAGTACTGCAGGCTGTTCTACCTAATGGTGATGTTGTCAAGACGGGTTCTCGAGCCCGAAAGAGTGCAGCTGGGTATGCAAGATCCCCTCCCGAATAAGTTTCTTTTTATGTATCTTGGGAGTGAATCATTATTTCACTGGTTCCTATGCCCATTAATGTGTTAAATACATGTGGGATTTACATGTATTCTTGGCATCAATGATGGGTTTTTTGTTCTCTTCCGTTGAATGTCAGATACGATCTTGCTCGTTTGATCATTGGAAGTGAAGGAACTTTAGGGGTAATTACAGAAGTGACTGTACGTCTTCAAAAGCTTCCATCTCATTCCGTGGTAGGTCTTCTATTTCATCTCTGTCCAAACAATGTTTTCCTTACAGTGTGTACTGGACTTGAATGCCGTCAACTCTCTGCATATTGGTGTGTGCAGTTGTTGTGTTAGCATATACACTATTATGGCTTTATGTAGTACACCAATTACTTTCATTTGCTCATAGATATTTCTTTTTGGAGAAATCCTTTATAATCATGCTATGGTACATAGCTATTATCTTGCATATTGGGAAATGGGGAACATTTGTGAGTCTGAACAAATAAAAGCTTCTCTTCTAAGCACCTGCTGTGTGCTCTGAACTGGAAAAATAACATGGTCTGAAGCCTATCGGTGTGATCTACTCCCTAAATTTCTAAACCTAATACTGTTGAAAGATCTACGCACACACACTGGATTTCTATGTTCATTTTGCTGTACGAACTATTTTGTACTACCTGTCTATTTTGTTCCTTATTTTACTGGTGAAGACACTCCTAGGTGCTCTGCTATTTCAGGTTGCAATGTGCAATTTTCAAACAATTAAGGATGCTGCTGATGTTGCTATTGCAACAATGCTTTCTGGTATACAGGTTTGTCTTTTTTTCTTCTGATTTTAGTTAGTTACAGGTTTGTCTTTTTTCTGCTGATGAAGCTCATATATGAAATTGTCACACCTCCACTTTGTAATCCATCATTTCGATCAATGAAATGGCTATAAGGTAGCTCTACCTTCTTACATCAAAAAATATATGAGATTGTTACACCTCTGTTTCAGATTGAGCAAATCCGCTTGTCTCCATAGGCAAGTGTTAGGTTAACTAACTAGGGAAATTTGGTTCTATGAACTATAAATATTGAAATGCTTTCATAGAACTTCTGCAGGTGTTTCAGTAAGCAATTTAAAAAGGTTATAGGTTATGACTACTTGTATGTTTTCTGCTTGACCAGGTCTCAAGAGTGGAATTGTTGGATGAGGTTCAGATAAGGGCAATTAACATGGCAAATGGTAAAAACTTACCTGAAGTACCAACCTTGATGTTTGAATTCATAGGGACAGGTAACCTAATTTTTATTTGAATAGTTAACACTTCACACTGAACTTTGACAAAAAAGTCTACTTTATACTGTATTGTGCATCTATGTTTGGCAGTACTGAGTCCTCTAGAGTTAAGTGTTCAAATAATAAATAAAAGATGGAACAGGAACCAATAGGCATAGAATATCTTAGTTTTCTCTAGATATGTTGACACTATAATTGACAAATGCAACTCCACAGTTTTATACTTTTACCGTCAATTAGTGTTTATGAATTTGGTTGATGATCAACGGTAGTGAGTAAAGAACTCTCGAATAAAACTAAATTTACTGTGCACACTGTTTCTGTCAAGATAACTTTTTGAATAGTACGTATTAAATAGCAGTCGGTATGTAGTCAAGTTTGGTTTCAAAGAGTGACATACAAGTCTGGGCTTGTGATCTTCCTGTCTTAGGGACAAAACCAGCACATTTCGAGTAATATAATATCTGGGTTTTGTTATCCACTTTTGAGCAGTTCCACTCGAAACTCAAAGTTCCTTCTCATTAAAAAACTTCTTAAGATGCAACTATTTTTTTCAGCTTGAATACCGCAATCTATTTTTTTATTTGCTAATATATTTCCATCGTGAATATCCAGAAGCCTATGCTCTTGAACAAACACTATTGGTTCAAAAGATTGCCACAGAACACCATGGATCTGATTTTGTTTTTGTAGAAGAGCCGGATGCTAAAGAGGAGTTATGGAAGGTCAGCCAATTTTTTCATCTGAACTTGTGTAGATTTCCTAGTACTCATCTGAATATTGTAGACTTCCTAGTAAATAAAGTAGTCTTTATTCTGCATAATCTTACACATGCCTGAATATGGTATCAAACTATCAATTTGCATCCACCTATATCTGGGTAACAGTGGCAGTGGCAGTACTGAAGTATGTGTTTCTCCTTTTGCTGAAACATATTTATGATAGCATTTTATTCTTATATGTGCAGATTAGGAAGGAAGCACTTTGGGCCGGTTTTGCCATGAAACCTGATCATGAGGCTATGATAACGGTCTGTTTACTTATAACTTGTCAACATATATTTTTTTGAACAAAAAAATATATTGATCAAGCATAGTCGGTGTACTTTGATGTTACACATCATGCTACCTGATGTTTGATTATGTAGTTGTGAATCTCAGCATCTTCCTTCGTAGTTATCATCCTCTTCATAAATGTGAGAACAATTATGATCTCAAAATAAGTGCTGCATTCAGGAGGACAATTGGCAACCAAACATGCTTACGGCTATGTAAATATGATTGGTCTTGTATCTCAACTCTTTCTTTGAATCAAGATAGGACTTCTCCATTAGCAAGCTGGTCTATTTAAATCTTGTGAGCACCATATTTATAGGATAAATCCATAATATGCTACTCACTGTGAGGATGACATGTGGCTCCCGTATCATGTGCGTCTATAGACTGGACAACTCAATGGCATAAAATGGATCCCCCCTCCCCCTTCTGATTTTTTTTTTATCTCATATGCTTATATAGATCGTCCAAAGGTCGTCACAATCATCATACCCTTACAAGCTTTCAATTTTCAGTGGACTGACTCTATCAAGTCATCTAATGCCACATATATGTTTATTTATGCAGGATGTTTGTGTTCCTTTGTCTAGACTTGCAGAATGCATATCTGTCTCAAAGGAAAAGCTTGATGCATCACCATTGACTTGGTACACGTTCTCTCTTATTATGCAAAGCCACTGTGTAAAATTATGTTCTCATTTATATCTAATACAAGGCATAGTCATGTGCTCCATTATCTAATATTTGAAATATGCATAAAGTAGCATCAAGCATGTTATTATCTCGCAATGGCTCCAATAAGACATCATGCCATCTTTTTTTAATCATGAATTCCTTACCTCTGATTTTTGTACGTTCCTAGTTTGGTTATCGCTCATGCTGGTGATGGAAACTTCCACACAATAATCCTATTTGACCCTAGTCAAGAAGACCAACGACGTGAAGCGGAGAGGCTAAACCATTTCATGGTTCATACTGCTCTCTCTATGGAAGGTACAATGAAAAACTGACCAAGCCAGCATGTAAAAGCTGCCTGAAAAGATTAATATTGACTCTGATGATGAACAGGTACCTGTACAGGAGAGCATGGTGTAGGTACAGGGAAAATGAAGGCAAGTGTCTATCACCTGTTTTCTTTTATTATGTTCTGCACTTCTGCTAGCAGATACAAGAGCCATCTTTGCTGATACGATTCTCAAAGTGATGGCACAACCGCCAAGTGCCAATCACTAACCATTCTCTTAAGATAGGAAAATTGCAAGAGGCTATACCAGTACATTCATGATGGTTGAACAGATTAAAAGTTCATGAGTATCTGGCCCAGAACGTACCTTCAAAACTTCAATTTCCCTTGCTGCCTATTGTAAATTTGTTACCCTACGGGTTATCAAGATGTACTTTATTTTTGAATTTCCTGATAGGACCTCCTATTGTCTTGCTCATGGCTGTCATCACCCCCATTACTGACTTTTATTTTTTCTATGCATTTTGGCAGTACCTAGAGAAAGAGCTGGGCATCGAGTCGCTAAGGACGATGAAAAGAATAAAGGCTGCGTTGGATCCCAACAATATCATGAATCCAGGGAAACTGATTCCACCTCATGTCTGCATTTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA024772