BGIOSGA028467

From RiceWiki
Revision as of 07:58, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA028467| Description = BGIOSGA028467| Definition = Oryza sativa Indica Group BGIOSGA028467, complete gene.| tag = | tid = BGIOSGA028467-TA|...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA028467

Description

BGIOSGA028467

Definition

Oryza sativa Indica Group BGIOSGA028467, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA028467-TA

Ensembl Protein ID

BGIOSGA028467-PA

Length

2356

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:15717545..15719900

Sequence Coding Region

15717545..15717870,15717938..15718793,15719808..15719900

Genome Context

<gbrowseImage1> name=IndicaChromosome08:15717545..15719900 source=RiceIndica08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome08:15717545..15719900 source=RiceIndica08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCGCCGCCACCAGTAACCACCTCTCCGGCCTCCCCGACGACGTCCTCCGGCACATCATCTCCTTGCTCTCCGCCAAGGAAGGCGGCGCCACCGCCGTGCTCTCGCGGCGGTGGCGCCCGCTGTGGCGCCAGGCTGGCACCGTCAACCTGGACACGGAGCCCTACTTGGACCCGGCGGCGTACAGAGGCAACAACTTCCCGGAGCACAGGCGGAGCGCGTTCGTCGACCACGCCCTGGCCGCCCTCGCCGCGTGCGAGAGCCCGAGGATCCTGAGCCTTCGCCTCGCGTCGGAGGAGATCGAGGGAGGCGCGGCCGAGGAGAAGTACGGCAGCTGCGAGAGCGGGAGCTCCGGCGGAACGTGGCGGCTGCAGCTCGGATCCCTGCCCTGCGCCGCCGCCACGCTCCGCGTGCTGCACGCCAACGACGTCGGCGTCGAACGCCTTGGCGACGGTGGCGGCGTCGGCGTCGTTCTCCCGCTCCTGGAGGAGATGCGGCTGGTAGAAGCCACCGTGTCACCGGACACGCTCCAGCGCGTGATCGACGCCGCGCCGAGGCTCGCCAACCTGTGGCTCGACGGAATCATCTTCACGAGCAACGACGGCAGCCGGAGACTCTACCTCGCCGACGGCTTCCGCCTCCAGCTCCGAGGCCCGGCGCTCACCGAGCTAGCCCTCATCGAGTACTACAGTAGAGACGCGGCATCGAGCTCGACGCGCCCCGCCTGCGCTCCTTCGTATGTCAAGGCTCCTTCCCCGGGGCACTACTCACTGACATCGCCGGCGCCGGACTTCGCATCCGCCGACCTTCACTTCCACGACCACCGGAGCTATGGCGACAAAGATCCCAACAACTTGACCGTACCCTTGTGGAGCTGCCTCCGGCACCTGCACGGCGTGAGGGTCTTGAAGCTGCAGCTAGACTTCTATGCAGAGTACATCGCCATGGAAGCCGACGCTTGCGACGGCGGCGGCGTCGTCCCCGCCACGTTCCCTAACCTTGAGTATCTCGAGCTTGACGCCCATTGCAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGACGACGCCTACTTCCGCTCGTTCGTCGACTTCACCTCCTCCAGAGCCGTCGAGGCGGACGGCCTCATCCCCATCGCCGACACCGCTGAGGTGGTGGTGCGACCAATTACGGTTCACATGCAAGGTTCTCGTGGTGAAATCTCCGGCAGCTACGCGGGCATTCCAATGTACGAAGTAGTTGTTAAGTGA</cdnaseq>

Protein Sequence

<aaseq>MAAATSNHLSGLPDDVLRHIISLLSAKEGGATAVLSRRWRPLWRQAGTVNLDTEPYLDPAAYRGNNFPEHRRSAFVDHALAALAACESPRILSLRLASEEIEGGAAEEKYGSCESGSSGGTWRLQLGSLPCAAATLRVLHANDVGVERLGDGGGVGVVLPLLEEMRLVEATVSPDTLQRVIDAAPRLANLWLDGIIFTSNDGSRRLYLADGFRLQLRGPALTELALIEYYSRDAASSSTRPACAPSYVKAPSPGHYSLTSPAPDFASADLHFHDHRSYGDKDPNNLTVPLWSCLRHLHGVRVLKLQLDFYAEYIAMEADACDGGGVVPATFPNLEYLELDAHCKXXXXXXXXXXXXXXXXXIDDAYFRSFVDFTSSRAVEADGLIPIADTAEVVVRPITVHMQGSRGEISGSYAGIPMYEVVVK</aaseq>

Gene Sequence

<dnaseqindica>1..326#394..1249#2264..2356#ATGGCCGCCGCCACCAGTAACCACCTCTCCGGCCTCCCCGACGACGTCCTCCGGCACATCATCTCCTTGCTCTCCGCCAAGGAAGGCGGCGCCACCGCCGTGCTCTCGCGGCGGTGGCGCCCGCTGTGGCGCCAGGCTGGCACCGTCAACCTGGACACGGAGCCCTACTTGGACCCGGCGGCGTACAGAGGCAACAACTTCCCGGAGCACAGGCGGAGCGCGTTCGTCGACCACGCCCTGGCCGCCCTCGCCGCGTGCGAGAGCCCGAGGATCCTGAGCCTTCGCCTCGCGTCGGAGGAGATCGAGGGAGGCGCGGCCGAGGAGAAGTGTGCCGGTGTGGTCGGCGCGCGTCGAGGAGCTCCGCATCCGCTGCGACGTCTCGTGGTTCTGCAGGTACGGCAGCTGCGAGAGCGGGAGCTCCGGCGGAACGTGGCGGCTGCAGCTCGGATCCCTGCCCTGCGCCGCCGCCACGCTCCGCGTGCTGCACGCCAACGACGTCGGCGTCGAACGCCTTGGCGACGGTGGCGGCGTCGGCGTCGTTCTCCCGCTCCTGGAGGAGATGCGGCTGGTAGAAGCCACCGTGTCACCGGACACGCTCCAGCGCGTGATCGACGCCGCGCCGAGGCTCGCCAACCTGTGGCTCGACGGAATCATCTTCACGAGCAACGACGGCAGCCGGAGACTCTACCTCGCCGACGGCTTCCGCCTCCAGCTCCGAGGCCCGGCGCTCACCGAGCTAGCCCTCATCGAGTACTACAGTAGAGACGCGGCATCGAGCTCGACGCGCCCCGCCTGCGCTCCTTCGTATGTCAAGGCTCCTTCCCCGGGGCACTACTCACTGACATCGCCGGCGCCGGACTTCGCATCCGCCGACCTTCACTTCCACGACCACCGGAGCTATGGCGACAAAGATCCCAACAACTTGACCGTACCCTTGTGGAGCTGCCTCCGGCACCTGCACGGCGTGAGGGTCTTGAAGCTGCAGCTAGACTTCTATGCAGAGTACATCGCCATGGAAGCCGACGCTTGCGACGGCGGCGGCGTCGTCCCCGCCACGTTCCCTAACCTTGAGTATCTCGAGCTTGACGCCCATTGCAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGACGACGCCTACTTCCGCTCGTTCGTCGACTTCACCTCCTCCAGAGCCGTCGAGGCGGACGGCCTCATCCCCATCGCCGACACCGCTGAGGTGGTGGTTTGCCTGGGACGGCGATGGGCATTTAGGTCACTTCGTGTAAAATAACGGCCCCCTAGCGCCTTGTCAACACGGATACATTATTTCCCCCAAAAGTGAGTTTGCAAGGTGGCCTACGGCTAAAACCACAAAGTCGCGATGTGCTGCAGCAAAATTTGCCATATAATAAATAACACATGAAATAAAATTGTTTAGCAAGATAATAAAAGTTTCAACCCAAATCAATTATTTTGACTTACAATCACTATAAAGTAAAATTTTTCAGATGGCTTGCATGCGGGTGAGCCGCCCGTTTACCTGAAAGTGTCTGCAAAAATCATTATTTTGCGTGCGGGTGGCACACCCGCATACGAAAAGCCGATTTCGCATGCGGGTGCTTACGTTGTTCACACGAAAAAAAAATAAAATTCTGAAAAAAATAAAAAAACTCAAAAATTTAAAAATCAAACCCTAGGTAGATCCCATCCGCATCCTGATGATGGTGGCGACGCGGGTCAGGTGGTCGCAGGGACGGCGGCGGTAGATCCGACTGTCGTGGGGCCGGCGGCGGCAGATCCACCGACTGCTGCCCACCTGAGGTCACCGAGCCGCCTGCGGCCTCCCCAGCTCGAGCTTGCCGCCACCACCGGCCATCGCTGGGCTGAGTGCGCTGCTGCTTGCCACCGGCCTCCCGAGGACACTTGAGCCCGTCGTCGTCGCCACTAGTCGTTGCAGGGCTGTCGTTGCGAGGCCAAGCCCACCGCCAGTTGCGCGCTCCCACTGCCTCCGGCTAATGAGAGAGAGGAGAGGTGAGACAGATGGAGAGAGATGAGGATAAATAGGATAATGATTTAAAAAAATTGAAATGCCGAGAGAAAAAAAAGGAGGAGGTAAGTAGGTAGATATTTAAGAGGCACATCTAAAAAAATAGGCTTATTTTTTCATGCGGATATGTTAAAGGTCCGTCTGCAAACATTGATTTTTCGTACGGGTCTCTGATCCAGCCGTTTGTGAAAATGCTGTTTTTTTTTCCAGGTGCGACCAATTACGGTTCACATGCAAGGTTCTCGTGGTGAAATCTCCGGCAGCTACGCGGGCATTCCAATGTACGAAGTAGTTGTTAAGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA028467