BGIOSGA034012

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Revision as of 08:45, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA034012| Description = Japonica Group Os11g0474800 (Os11g0474800) mRNA,| Definition = Oryza sativa Indica Group BGIOSGA034012, complete gene....")
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Gene Name

BGIOSGA034012

Description

Japonica Group Os11g0474800 (Os11g0474800) mRNA,

Definition

Oryza sativa Indica Group BGIOSGA034012, complete gene.

LocusTag

NM_001074419.1

Ensembl Transcript ID

BGIOSGA034012-TA

Ensembl Protein ID

BGIOSGA034012-PA

Length

3587

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:12926317..12929903

Sequence Coding Region

12929901..12929903,12929517..12929805,12929255..12929435,12928889..12929106,12928662..12928782
,12928430..12928527,12928113..12928324,12927917..12928029,12927726..12927821
,12927418..12927633,12927155..12927296,12926317..12926904

Genome Context

<gbrowseImage1> name=IndicaChromosome11:12926317..12929903 source=RiceIndica11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome11:12926317..12929903 source=RiceIndica11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGACATAGATGAACTGCGGGTGATAGTGAGGAAGCAGCTGCAGGGAGTTGAGTTATCACCATCTTCATACGACACGGCATGGGTGGCCATGGTGCCAGTGCAGGGGTCTCCTCAGTCTCCATGCTTCCCGCAGTGCGTCGAGTGGATACTTCAGAACCAACAGGAGGACGGATCATGGGGCCATTCTGCAGGGCCATCAGGAGAGGTAAACAAAGATATTCTATTGTCTACATTGGCATGTGTTCTTGCACTCAACACATGGAATGTTGGTCAAGATCACATCAGGAGAGGACTGAGTTTCATTGGAAGAAATTTCTCGGTTGCCATTGATGGGCAATGTGCCGCTCCTGTCGGTTTTAACATTACATTTTCTGGTATGCTTCACCTTGCCATTGGGATGGGTTTGAAATTCCCTGTTATGGAAACGGATATCGATAGTATATTTCGCCTCCGGGAGGTTGAATTTGAAAGGGATGCTGGTGGTACAGCTTCAGCAAGGAAAGCCTTCATGGCATATGTATCAGAAGGGTTGGGGAGAGAACAAGATTGGGATCATGTAATGGCATATCAAAGGAAGAACGGTTCATTGTTCAACTCGCCTTCCACAACAGCAGCGTCAGCAATCCACAGCTGCAATGACAGAGCTCTAGACTATTTGGTCTCTCTTACATCCAAATTGGGTGGCCCAGTGCCAGCGATACATCCAGACAAGGTATACTCCCAGCTCTGCATGGTGGACACCCTTGAGAAAATGGGGATCTCCTCTGATTTTGCTTGCGACATACGCGACATATTGGACATGACCTACAGTTGCTGGATGCAAGATGAGGAGGAGATCATGTTGGATATGGCAACGTGTGCAAAGGCATTTCGCCTCCTTCGTATGCACGGTTATGACGTCAGCTCAGAGGGAATGGCTCGATTTGCTGAACGATCTAGCTTCGATGATTCAATTCATGCATATCTCAATGACACTAAGCCCTTGCTGGAGTTGTACAAAAGTTCACAACTTCACTTCTTGGAAGAAGATTTGATACTAGAAAATATCAGTTCCTGGTCAGCTAAATTACTCAAGCAACAACTCTCGTCCAACAAGATAATGAAATCATTAATGCCAGAGGTTGAGTATGCCCTGAAATACCCCCTCTATTCAACCGTGGATGCACTAGAGCATAGGGGTAACATAGAGCGATTCAATGTAAACGGCTTCCAGCGCCCGAAATCAGGATACTGTGGCTCCGGTGCAGACAAAGAAATTCTAGCTTTGGCAGTCGATAAATTCCACTACAACCAGTCTGTTTACCAACAAGAACTCCGGTATCTCGAGAGCTGGGTGGCAGAATTCGGACTGGATGAGCTGAAATTCGCAAGAGTGATTCCACTGCAGTCACTCTTGAGTGCTCTTGTCCCCTTGTTCCCTGCTGAATTATCCGATGCCCGCATTGCATTCAGCCAGAATTGCATGCTGACGACTATGGTCGATGATTTTTTCGACGGTGGAGGGTCCATGGAGGAGATGGTGAACTTTGTCGCGTTAATCGACGAATGGGACAATCACGGTGAGATTGGCTTCTGCTCCAACAACGTAGAGATTATGTTCAATGCTATTTACAACACGACCAAGCGCAACTGCGCAAAGGCCGCACTGGTACAGAACCGCTGTGTCATGGATCATATAGCCAAGCAATGGCAGGTGATGGTGAGGGCCATGAAGACGGAGGCAGAGTGGGCGGCGAGCAGGCACATTCCGGCAACAATGGAGGAGTACATGTCGGTGGGTGAGCCGTCCTTCGCGTTGGGACCCATCGTCCCACTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGAGGAGCCCGGAGTACGGCCAGCTGCTGCGGCACGCGTCCGCCGTCGGCCGACTCCTGAACGACGTGATGACGTACGAGAAGGAGGTCCTCACATGGACGCCCAACAGCGTCCTCCTGCAAGCCCTTGCTGCCGCCCGTGGCGGCGGCGAGTCGCCGACGCCGCCGTCCCCGGCGTGCGCCGAGGCGGCCAGGGGGGAGGTGAGGAGGGCCATCCAGGCATCCTGGCGTGACCTGCACAGGCTGGTGTTCAGAGACGACGACGGCAGCAGCATTGTTCCCCGGGCATGCAGGGAGCTCTTCTGGGGGACGGCTAAGGTGGCCAACGTCTTCTACCAAGAGGTAGACGGCTACACACCCAAGGCGATGCGCGGCATGGCCAACGCAGTGATTCTGGATCCACTGCACCTGCAACAGTAA</cdnaseq>

Protein Sequence

<aaseq>MDIDELRVIVRKQLQGVELSPSSYDTAWVAMVPVQGSPQSPCFPQCVEWILQNQQEDGSWGHSAGPSGEVNKDILLSTLACVLALNTWNVGQDHIRRGLSFIGRNFSVAIDGQCAAPVGFNITFSGMLHLAIGMGLKFPVMETDIDSIFRLREVEFERDAGGTASARKAFMAYVSEGLGREQDWDHVMAYQRKNGSLFNSPSTTAASAIHSCNDRALDYLVSLTSKLGGPVPAIHPDKVYSQLCMVDTLEKMGISSDFACDIRDILDMTYSCWMQDEEEIMLDMATCAKAFRLLRMHGYDVSSEGMARFAERSSFDDSIHAYLNDTKPLLELYKSSQLHFLEEDLILENISSWSAKLLKQQLSSNKIMKSLMPEVEYALKYPLYSTVDALEHRGNIERFNVNGFQRPKSGYCGSGADKEILALAVDKFHYNQSVYQQELRYLESWVAEFGLDELKFARVIPLQSLLSALVPLFPAELSDARIAFSQNCMLTTMVDDFFDGGGSMEEMVNFVALIDEWDNHGEIGFCSNNVEIMFNAIYNTTKRNCAKAALVQNRCVMDHIAKQWQVMVRAMKTEAEWAASRHIPATMEEYMSVGEPSFALGPIVPLSAYLLGEELPEEAVRSPEYGQLLRHASAVGRLLNDVMTYEKEVLTWTPNSVLLQALAAARGGGESPTPPSPACAEAARGEVRRAIQASWRDLHRLVFRDDDGSSIVPRACRELFWGTAKVANVFYQEVDGYTPKAMRGMANAVILDPLHLQQ</aaseq>

Gene Sequence

<dnaseqindica>1..3#99..387#469..649#798..1015#1122..1242#1377..1474#1580..1791#1875..1987#2083..2178#2271..2486#2608..2749#3000..3587#ATGGTATAGTATACCAACATATATTAATGTTGCACATATGATTATGTACATATAACATATATATCCATCGTTGATTTCATTATTTCCACTGAATACAGGACATAGATGAACTGCGGGTGATAGTGAGGAAGCAGCTGCAGGGAGTTGAGTTATCACCATCTTCATACGACACGGCATGGGTGGCCATGGTGCCAGTGCAGGGGTCTCCTCAGTCTCCATGCTTCCCGCAGTGCGTCGAGTGGATACTTCAGAACCAACAGGAGGACGGATCATGGGGCCATTCTGCAGGGCCATCAGGAGAGGTAAACAAAGATATTCTATTGTCTACATTGGCATGTGTTCTTGCACTCAACACATGGAATGTTGGTCAAGATCACATCAGGAGAGGTATGAAAGAGACTATTGTCCATGCTCTCTTCATGTTTGTGTTTGAGGCCTGAACATACTTAATACCCATGAATCTGATAGGACTGAGTTTCATTGGAAGAAATTTCTCGGTTGCCATTGATGGGCAATGTGCCGCTCCTGTCGGTTTTAACATTACATTTTCTGGTATGCTTCACCTTGCCATTGGGATGGGTTTGAAATTCCCTGTTATGGAAACGGATATCGATAGTATATTTCGCCTCCGGGAGGTTGAATTTGAAAGGTCAGTGCAAGGAAAAGCTCAAAGACAAACATCTGCATTATACGTAGCATTTTGGACATCGGCATAGTCTCCAATACATGTTCTATATATCATACACCTCTTTTTTTCATCTGATAATTCCCACGGGCTTCACGAATTTTGCCATCAGGGATGCTGGTGGTACAGCTTCAGCAAGGAAAGCCTTCATGGCATATGTATCAGAAGGGTTGGGGAGAGAACAAGATTGGGATCATGTAATGGCATATCAAAGGAAGAACGGTTCATTGTTCAACTCGCCTTCCACAACAGCAGCGTCAGCAATCCACAGCTGCAATGACAGAGCTCTAGACTATTTGGTCTCTCTTACATCCAAATTGGGTGGCCCAGGTGCATACTGTTCACTACGGAACCAAAAAAAAAAAAGTGGCCAAAAACATATGTCAACCAGCTATGAGTGAGATTTTTTTACAGTAGATTCTTTTTTTTTTTTCAGTGCCAGCGATACATCCAGACAAGGTATACTCCCAGCTCTGCATGGTGGACACCCTTGAGAAAATGGGGATCTCCTCTGATTTTGCTTGCGACATACGCGACATATTGGACATGACCTACAGGTATTTGCAACTCGTAAAGATTTTACAACAGAACAAAAAAAAAGAAAACGAGACAAGCAACTCACAAGCTGTTGTATCATTGTACCTAGCTAACCTATTTCGTTATCTTGATGATTGTGATCTGCTCGAATTAGTTGCTGGATGCAAGATGAGGAGGAGATCATGTTGGATATGGCAACGTGTGCAAAGGCATTTCGCCTCCTTCGTATGCACGGTTATGACGTCAGCTCAGGTGCTAATCTACTGAAATTTGAACACCCTTAATCCTTTGTCTTGGGTTTTTTTTTTCTGTGATTATTTCTAGAAATTTTATCGCCAACTTGGAACCGTTGAGCAGAGGGAATGGCTCGATTTGCTGAACGATCTAGCTTCGATGATTCAATTCATGCATATCTCAATGACACTAAGCCCTTGCTGGAGTTGTACAAAAGTTCACAACTTCACTTCTTGGAAGAAGATTTGATACTAGAAAATATCAGTTCCTGGTCAGCTAAATTACTCAAGCAACAACTCTCGTCCAACAAGATAATGAAATCATTAATGCCAGAGGTAAATAAGAAGTATGCTCTATAACATAACAGAAAAATGAGTCGTTCTTTCTCTTGAGAACATCACTTTCATCTTTTTGTCAGGTTGAGTATGCCCTGAAATACCCCCTCTATTCAACCGTGGATGCACTAGAGCATAGGGGTAACATAGAGCGATTCAATGTAAACGGCTTCCAGCGCCCGAAATCAGGATACTGGTGAATTTAACATCAATTATCTCGAGGGTACAAATTCTTGCTTTACTAGTATTAAACCTGAATTCTAAACTCCGGTATCTCGTACATTGGACCAGTGGCTCCGGTGCAGACAAAGAAATTCTAGCTTTGGCAGTCGATAAATTCCACTACAACCAGTCTGTTTACCAACAAGAACTCCGGTATCTCGAGAGGTGAAGAGATCTAACCATACATAGATGGGGCATATGCAATTTCAACATATATTCGCGACTAATATTTTGATTTGAACGAATGCATTATACAGCTGGGTGGCAGAATTCGGACTGGATGAGCTGAAATTCGCAAGAGTGATTCCACTGCAGTCACTCTTGAGTGCTCTTGTCCCCTTGTTCCCTGCTGAATTATCCGATGCCCGCATTGCATTCAGCCAGAATTGCATGCTGACGACTATGGTCGATGATTTTTTCGACGGTGGAGGGTCCATGGAGGAGATGGTGAACTTTGTCGCGTTAATCGACGAGTAAGTAGGAACGCTCATCAGCCACGTCTTTTTTATTCGTGCAACCTAGTACTATATATATATTGTGATGATTCAATTCGTGCATGCCTGCCTGCAATTACTTACTTTACTTGTGCTGCAGATGGGACAATCACGGTGAGATTGGCTTCTGCTCCAACAACGTAGAGATTATGTTCAATGCTATTTACAACACGACCAAGCGCAACTGCGCAAAGGCCGCACTGGTACAGAACCGCTGTGTCATGGATCATATAGCCAAGCAAGTAAGACTACCTGCTGATTGATGTGTAATTAATATGATGGAGAGTTATTAAAATTTCCAGTTCAAGCTAACCTTCTACTGCTTGCTGCGGTTCTGAGATCGAGTAGTAGAATTTAAATCCAATCATGGATTTAATTTTCCTAGATTTATCTCAAAATAACCATTATATTCAATGGTAACTTTAACAGCATACTGTTAAAAGGAACTCCCTAATTAATTTTAACTGTGTGTCTCCAATAATGTGGGTGCAGTGGCAGGTGATGGTGAGGGCCATGAAGACGGAGGCAGAGTGGGCGGCGAGCAGGCACATTCCGGCAACAATGGAGGAGTACATGTCGGTGGGTGAGCCGTCCTTCGCGTTGGGACCCATCGTCCCACTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGAGGAGCCCGGAGTACGGCCAGCTGCTGCGGCACGCGTCCGCCGTCGGCCGACTCCTGAACGACGTGATGACGTACGAGAAGGAGGTCCTCACATGGACGCCCAACAGCGTCCTCCTGCAAGCCCTTGCTGCCGCCCGTGGCGGCGGCGAGTCGCCGACGCCGCCGTCCCCGGCGTGCGCCGAGGCGGCCAGGGGGGAGGTGAGGAGGGCCATCCAGGCATCCTGGCGTGACCTGCACAGGCTGGTGTTCAGAGACGACGACGGCAGCAGCATTGTTCCCCGGGCATGCAGGGAGCTCTTCTGGGGGACGGCTAAGGTGGCCAACGTCTTCTACCAAGAGGTAGACGGCTACACACCCAAGGCGATGCGCGGCATGGCCAACGCAGTGATTCTGGATCCACTGCACCTGCAACAGTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA034012

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA034012&oldid=35988"