BGIOSGA036581

From RiceWiki
Revision as of 08:24, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA036581| Description = cDNA clone:J033067N18, full insert sequence| Definition = Oryza sativa Indica Group BGIOSGA036581, complete gene.| ta...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA036581

Description

cDNA clone:J033067N18, full insert sequence

Definition

Oryza sativa Indica Group BGIOSGA036581, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA036581-TA

Ensembl Protein ID

BGIOSGA036581-PA

Length

2645

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:3391873..3394517

Sequence Coding Region

3394419..3394517,3394227..3394285),complement(3393508..3393738,3392923..3393140),complement(3392543..3392700
,3392176..3392458),complement(3391873..3392099

Genome Context

<gbrowseImage1> name=IndicaChromosome12:3391873..3394517 source=RiceIndica12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome12:3391873..3394517 source=RiceIndica12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGATCTGGTGGAGGCGGAGGCGGAGGAGCAGCCGCCGGACGAGGACGGCGACGAGGAGGGGTACGTCGAGGCGGACCCCGCAGGCCGCTTCATCCGGTATGATGAGATCGTGGGGTCAGGGGCCGTCAAAACGGTGTATCCTTTCATCAATCTCATCTACAAAGCCTTCGATAAGCTGGAGGGTGTCGAGGTAGCATGGAGCCAATCCCGGATCGATGACTCTGTCATGGGGTCCTCTAAGAAGATGAAGCAACTAAACACAGAGATTCAACTTTTGAAGACACTCAAGCATAAGAACATTGAGAAAATGTTTGCTTCATGGGTTGATGGGGAGAAGAAGACTGTTAACATAATCACAGAGTTGTTCACATCCGGGAGCTTGACACAGTACCGCAGAAAGCACAAGAAAGTGAATATGAAGGCTATGAAACGATGGGCAATACAGATATTAACAGGGCTAGAATATCTGCACAGTCAGAAGCCAGCAATTATACACAGGGATTTAAAATGTGACAATATATTCATAAATGGAAATCATGGGAAAGTGAAGATTGGTGATTTTGGTTTGGCAACATTCATGCAGCAACAGAAAAAAAGTATAAAAGGCACCTTAGAATTTATGGCACCAGAGCTGTTAACTGGGCATTACAATGAATTGGTTGATATATATTCATTTGGGATGTGCATGCTTGAAATGGTGACATGCGAATACCCATACAGTGAATGTCAAGGCATGGCCCATATATTCAAAAAGATTGATGAGGGTAAGAAACCAGCTGCGTTCTACAAAATTAAAGATGCAGAAGTAAGATCTTTCATAGAGAACTGTTTAGCTCCAGTAGAGAACAGAATGTCTGCAACAGAGCTGTTGAAAAGCTCTTTCCTCCAGGATGATGATCTTATCTCAGTCTCTCTGGTCAAGAATATGTCTGAAGATGGGCAGCAGCCTGTCAGTTGCATGCTTCGTAAGGGCGAGTTTCTGCTGACAGGAAATGTTGATGTAGCCAGCCATGTTGATTTATGGCTAAGATTTCCTGATCCCAGCGGTTGTTTCAAGAGTGTTGAATTCCCATTCAATTTGACTGAAGATACAAGTCTTTCTGTGGCTGTGGAAATGGTTGAGCAATTTGGACTGACACAAGACAGCAGACCGATCATCGCGCAGTTGATCGATGCATTCTTGGTCATCCTGATTCCTGAATGGACACCGTGTGTCGCCATCCGTCAGGTGGTTTCTGAGGGTGCAAACGGCTTGACAATTGAGAAGCGCTGA</cdnaseq>

Protein Sequence

<aaseq>MDLVEAEAEEQPPDEDGDEEGYVEADPAGRFIRYDEIVGSGAVKTVYPFINLIYKAFDKLEGVEVAWSQSRIDDSVMGSSKKMKQLNTEIQLLKTLKHKNIEKMFASWVDGEKKTVNIITELFTSGSLTQYRRKHKKVNMKAMKRWAIQILTGLEYLHSQKPAIIHRDLKCDNIFINGNHGKVKIGDFGLATFMQQQKKSIKGTLEFMAPELLTGHYNELVDIYSFGMCMLEMVTCEYPYSECQGMAHIFKKIDEGKKPAAFYKIKDAEVRSFIENCLAPVENRMSATELLKSSFLQDDDLISVSLVKNMSEDGQQPVSCMLRKGEFLLTGNVDVASHVDLWLRFPDPSGCFKSVEFPFNLTEDTSLSVAVEMVEQFGLTQDSRPIIAQLIDAFLVILIPEWTPCVAIRQVVSEGANGLTIEKR</aaseq>

Gene Sequence

<dnaseqindica>1..99#233..291#780..1010#1378..1595#1818..1975#2060..2342#2419..2645#ATGGATCTGGTGGAGGCGGAGGCGGAGGAGCAGCCGCCGGACGAGGACGGCGACGAGGAGGGGTACGTCGAGGCGGACCCCGCAGGCCGCTTCATCCGGGTACGGGTTGCTGTCCTGCTCGTTTCTGTTCGAGTTCTATCTAGCCTTCTAGGGTTTTGTTGCTGCTGCGGAAGATGGGTGGATTCGGGTGGTGGCTAATTGTTGTTGTTGTTGTTGCCCTCTGCGTGTGCAGTATGATGAGATCGTGGGGTCAGGGGCCGTCAAAACGGTGTATCCTTTCATCAATCTCATGTGCTGTTTCTAGTTTAGCCCTTTTTGTTCTTGATTGAATTATCACGATTGAATTAGTTGTGGAATATAATTCGATTTGTTGATCACAGTAGAACCATGCCCGATGATTATTTATTTATCAGTATTAGATGTGTTCTGAACTTATGATGGACACCCGCGATTCCATGTAGAATCTACAGACACATTCAGAGATGGAACCGAACTTTTCATGCTTCTGTAATCTGTGGCTAAAATTATTGATCGGTGTTGACCTTATTAACCTTGATATATATTCATGGAAAGATGTTAATCCATAAATATTTAGTTCTGCTAACCATCTGTACTTCTATTATGGATAAAGTGTGACAAATTTCAAGTTTATTTATTCTTGGCTGATTCAAGATGTTCCAGTGTTTCTTTAATTCGGGTTTCACAACCTGAATGTCTCATGCTGGTGGGACAAAATTATATTGTTCATATCATATTCCTTAATTGTGATTTGGAAATAGCTACAAAGCCTTCGATAAGCTGGAGGGTGTCGAGGTAGCATGGAGCCAATCCCGGATCGATGACTCTGTCATGGGGTCCTCTAAGAAGATGAAGCAACTAAACACAGAGATTCAACTTTTGAAGACACTCAAGCATAAGAACATTGAGAAAATGTTTGCTTCATGGGTTGATGGGGAGAAGAAGACTGTTAACATAATCACAGAGTTGTTCACATCCGGGAGCTTGACACAGTATGCCCCTCATCCTTACGACAACTATGCTGTCAGCTGGAGCATATTAATAAACTGTTGCCTATTCATTGGTTTGGATATCTATCTTCTAAATATACCTTTTTTTTACTGAATTAGTGCTACCTGAACATTTTTACAGTTTTCCATTGTGCAAATTAAAGTTTTAGTTGGCTCCTTTACAATTCTTGGATAATATTTGGTAACTTTTCCTTTTCATTGTCATTTGTTTGTACCGCCCTTTAATTCAGTATAGATGACTAGATGAGCGTTGCTTAAAATTATTTACCCTAAAACTTCAAGAGGGATACTGCGTTTCTTTTACCTTATAAATTACAATGTAACCTTTTTTATGTCACCATGTAACCAGGTACCGCAGAAAGCACAAGAAAGTGAATATGAAGGCTATGAAACGATGGGCAATACAGATATTAACAGGGCTAGAATATCTGCACAGTCAGAAGCCAGCAATTATACACAGGGATTTAAAATGTGACAATATATTCATAAATGGAAATCATGGGAAAGTGAAGATTGGTGATTTTGGTTTGGCAACATTCATGCAGCAACAGAAAAAAAGTATAAAAGGTAGATATCTCATATCAACATTGTTATATGTCTGCCATCTTATGTGTTTTCTAACTGTTACAGTTTTCTCAGAACATAACTATTCTATTTAGCATGTATGTCCACTTTTAAACTTATGTTACCAATTTTCTTGACTCATATAATTCTGTTTTCTTTTCATCTTAAAAAGGATTTCTCTTTCAGTTGGATGTGTAATAAGGATATATTAATCATTAACTGCAGGCACCTTAGAATTTATGGCACCAGAGCTGTTAACTGGGCATTACAATGAATTGGTTGATATATATTCATTTGGGATGTGCATGCTTGAAATGGTGACATGCGAATACCCATACAGTGAATGTCAAGGCATGGCCCATATATTCAAAAAGATTGATGAGGTAAGGTCTTGATGTCTACAGATACCAGAGTGATTGTAGTAGCCAACAACTTAACTTTTTGTTTGTATGACCTATTTGATATAGGGTAAGAAACCAGCTGCGTTCTACAAAATTAAAGATGCAGAAGTAAGATCTTTCATAGAGAACTGTTTAGCTCCAGTAGAGAACAGAATGTCTGCAACAGAGCTGTTGAAAAGCTCTTTCCTCCAGGATGATGATCTTATCTCAGTCTCTCTGGTCAAGAATATGTCTGAAGATGGGCAGCAGCCTGTCAGTTGCATGCTTCGTAAGGGCGAGTTTCTGCTGACAGGAAATGTTGATGTAGCCAGCCATGTTGATTTATGGCTAAGATTTCCTGATCCCAGCGGTAATCATATTGTTTGAAATCTTTCTTTTCCAGAATTCAACAACACGTTTTGTACTGAACATCAACTTCCTTTCAGGTTGTTTCAAGAGTGTTGAATTCCCATTCAATTTGACTGAAGATACAAGTCTTTCTGTGGCTGTGGAAATGGTTGAGCAATTTGGACTGACACAAGACAGCAGACCGATCATCGCGCAGTTGATCGATGCATTCTTGGTCATCCTGATTCCTGAATGGACACCGTGTGTCGCCATCCGTCAGGTGGTTTCTGAGGGTGCAAACGGCTTGACAATTGAGAAGCGCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA036581