Os01g0113400

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Revision as of 04:17, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0113400| Description = Similar to TAK19-1| Version = NM_001048355.1 GI:115434123 GeneID:4326126| Length = 6718 bp| Definition = Oryza sati...")
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Gene Name

Os01g0113400

Description

Similar to TAK19-1

Version

NM_001048355.1 GI:115434123 GeneID:4326126

Length

6718 bp

Definition

Oryza sativa Japonica Group Os01g0113400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:730303..737020

Sequence Coding Region

730484..731580,731695..731921,732030..732217

Expression

GEO Profiles:Os01g0113400

Genome Context

<gbrowseImage1> name=NC_008394:730303..737020 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:730303..737020 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaaaatcttgagccttcttgcggatacttggccatgattccagttagttggactcctgccagtggtaaaaaataccaatattttgctgagttgatgaggaagggattctctgttcgctttccttttgtcttagatcatccgactgcatttgagctaatcaagcagtgcctaaaccggtcaattcgtggttttcgtgaagaaccattctccactactgcacatgtcaaaaatcggattgcggacattgtttttatggacttgatcttttgggcatgcataattggcaaaacgagccaaacatcagattattttgagacaccactctatatggtggagatgcttcatgggaaaagaatattttattcaggatttgtcctacaatttgtcatgtggacagtaaagtggatatatgtcatatgcaggtttgtgttggcgccactggcactattgacttttcttgcacaaagatactggaaaacaaggatcacaatcgatgcagttgagaagtttctgcgaatgcagttgatgcttggcccgacgaggtacacctacacagatatcattgcaatgacaagccatttcagagacaagctaggtcagggtggttacggttctgtattcaagggtgtcatactcccgggtgatgtttacgttgccatcaagatgctagacaactacaattgcaacggagaagagttcatcagtgaggtctccaccatcggtagtatccatcatgtcaatgttgtgcgtctggtggggttttgtgcagaggaaatgaggagggcactagtgtacgagtacatgccccatggatctctcgacaagttcatcttcgcacctgaaaagagcttctcctgggacaagctcaatgagattgcactgggcattgctagaggaataaactacttgcatcaagggtgtgatatgcagattctacattttgatatcaagccacacaacatccttcttgatagcaatttcgtcccaaaagttgccgattttggcctcgccaaactatgcccacgggacaacaattatgtgccagttagcgctgcacgaggaacagtaggttatattgctcctgagatgatatctcgaagcttcggtgtcatatctagcaaatctgatgtttacagctttggaatgcttttgttagagatggctggagggcgaaggaactctaagcagaacatgtcaagctcaacccaggtgtattatccatcattggtgtataatcaactcattcaacaagagatgggtgagatcaccaataccttgaatatgcatgagctggaaaggaagttgtgtgttgttggtctacattgcattcaggtgaagcctcctgatcgtccaacgatgagtgaggtcatagaaatgcttgaaggtgatgttgatggtctgcagctgccttccaggccattcttctgcgatgatgaacccctgcccctgttggtggattcttaccgtttctcctctgagctaactgaaatctcagaggaggatggctga</cdnaseq>

Protein Sequence

<aaseq>MENLEPSCGYLAMIPVSWTPASGKKYQYFAELMRKGFSVRFPFV LDHPTAFELIKQCLNRSIRGFREEPFSTTAHVKNRIADIVFMDLIFWACIIGKTSQTS DYFETPLYMVEMLHGKRIFYSGFVLQFVMWTVKWIYVICRFVLAPLALLTFLAQRYWK TRITIDAVEKFLRMQLMLGPTRYTYTDIIAMTSHFRDKLGQGGYGSVFKGVILPGDVY VAIKMLDNYNCNGEEFISEVSTIGSIHHVNVVRLVGFCAEEMRRALVYEYMPHGSLDK FIFAPEKSFSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDSNFVPKVAD FGLAKLCPRDNNYVPVSAARGTVGYIAPEMISRSFGVISSKSDVYSFGMLLLEMAGGR RNSKQNMSSSTQVYYPSLVYNQLIQQEMGEITNTLNMHELERKLCVVGLHCIQVKPPD RPTMSEVIEMLEGDVDGLQLPSRPFFCDDEPLPLLVDSYRFSSELTEISEEDG</aaseq>

Gene Sequence

<dnaseqindica>5441..6537#5100..5326#4804..4991#gttgggcttgaacccagtccccacagttcccccctccccatcgacctgcgggctgcggcggcgctccagcagacggcggcggcgccgccggtgccggcgccaaaatcaacccgacttccaggctcccagcgccactgcgcgtggctgccctggctctgagcgcatccagcggttgagctcgccctgccccgaccccgcgctccgccgcggatctctagaaacgccaccacgacgcccggcgatggtttccacggcagattgcttccccctccctgacatttgatgatggaggtatttattttgcgacatgctttagtatcatggcatggttgattttctgccctacagcgttgtcttctcacgtttccctcacatattcaggccctggctctttcaatggcgcatggataggaggaatatgcaacaaaaggaaacttcttactggcatttgtcattgacaaatagacaatggtaatggtgatccctttgctttgctattcatttgttttaaacataaagcgtgctcaaacccaatttaatgcatccatttgataacactagatttacaatttccttgcagcattgtcttgcaaaatatccatcagaatactgacccatgaaaaggccaatgggagtatctgactgactagtgcagctaggagtacagtacagtaggagatacaccacagcaacgactgaacaaggtaatcaccacgactgaaccactatgttgcaggttgagttcaatgcgatgcttttctgcttaactgtgttacatggtgaactcacctcagatggctaatacagtggaatgatcaaagtacatattatgcaatatctaggcgttacattactatgcatcatgtggataaagtataagtcccaaaaatttactaagccattgtggtgtagtttccatggtttatggcataggatggctttcatacgaaacaaatggcttaggaggcacctgtatgttctgcaaccttccagttatcatgtttacagcctttgtcattgagggccgatttcttgggttccactgaatacaccacagtgccacaagggccagctgtctcaccatttgtttctcttcttctgtcatttccctactaagtatgaagtcctgctctgtaattactttctcatagatccactctggaaagtatacctcattttggttctcaatacttgggtcccagctcctccttccactcaccatttctaaaacaaccatgccaaaactgtaaacatctgacttgtaagatatctccccaaagttcctagaatatagctccggtgcaatgtatcccattgtgcctcttgctttggtcaaggtaataatgctttggtcccttgggcacagctttgcaagaccaaagtccgaaatctttggactgaagttatagtccagcaagatattatgaggcttgatatcaaagtggaggatgcgctggttgcatccttgatgcaggtactccattcctcgggcaatgcctaaagcaatatctagcatcttgtctggtgacaggagctcttgagtattaggatcacgcaagaatatatatttctccaatgactcgttaggcatcaattcataaacaagagcacgtcttgttccttcagagcagaaacctaggagacggacaatgtttgtatggtggatcgttccaatggttgcaacttcattaatgaactcttctccatcccctgtagggttctctagcatcttgactgccacaggcactccatttggtagctttcctttgtatacagttccaaatccaccttggcctactttttccttgaagcatcttgctatcttctttacttcagagaaagtataccttgtaggtttagatgtgccatatgtccttagaaacatttcaaccttcaagtgcacctcttcattataacttagcttcagggagagatagattgcagtggccaccaccaatgaaataacaacaaatgcagctaccgatgatgttgctgaatagatacagaatagaaaattagcacattgcatcaggacagaaagctatcccctattgagcaaatgattgtgatgggtataagagaatgtagtgtctttttgacagaagaatgtagagttagagcagccaacaagaaaaaaatacgtgtggcagataactctgtttcttttcttctcttttgataaaaaaacggaggtttgaactttgaattactgcagtacctgcaatgactttgacacgtgaacctgcaaataccaaacaatatagtaagattgttaatagtttaacagatgaaacagaaatatacttatgaaaacatagtaagattcaatatagcaatagatatgatagaagttttcgttttaggggaataaatgtaatgttaatgtgattatgtgaacatatatgtaacagacagttgttcctttcatcaatgcattagaagctgtttctccaaagcatctctggggattgagtgttatgccagattgaggttggttaaggtgaataaagtggatcaagggttatggctcatgattttttttcacaaatcactcgcagtgtgaactgattattcatcaaagcaaccaaacatctaactgcagttcccgttttatcatatactaactaggatgtgggcactaagatttaattattggtgggtgtaatcatgcacttataacaacagcaaaggtgcttcatcaatgcacttcttgttctgaagttctagggatgactctttgtaaggtgaagctacctagccaaatggtttgtagtgcgagttgcaaaatacctatttatagctatctcatggaagtgtctgtgaactaaaggagtagtatatcatattatcattagtaaattaagtgcacgaacttaaaaggaaagtatgatgaggaaataaaacatgagttatgcacttatgctgtcatataatgttttggtatctgattaggatggtaccatgaggtttgtggcccatgcagaatgtttgattcctttgtgagctgaatgcgcagcgttgtccttgctgttcacactgcacacaattgtcaggaatgcctccctcggaccaacttacagttgtctcagcaaagttgaggattctttctgccagttgcttgaacgttggaccatcagcggtgactgcaccggatatcggaacaatgcctttagagacagccttgcagtccaatggaagtgaataaatgtcttcataagcatccaccaaatatgagaagtggcttgggtcactgaggcaggagattgggcccacgacagcatgatcagcaatattcccatcatagtcattggtcggagacatacttggtgtgagcacttttgaacagcatactattttcccaggctgggcattgtataatgaacagcgactggaatgataatctggttccggtagattgtcgatgatgagcttctgaagcgggtatgaagacaatgagtctacgagcgggatgatctggaaaacagctttcttgtaatctatggcagttaccttgcatggccccagaaatgggtgatgcaggatggtgtctggaccagagcatgctagcctcgcgcatgaagcactgcatgatgatgatgaagatgagttgctggattcaagctggtgagggaaccggatctctggtccactgtcactgcaccaggacggtggacaatttctggcgaagtcttcctcctcccaagctgaacccatggccgggtaggcgccatggctgatgacggagaggaggagtgttgttgcaatgactttactcatctttgtgcactgaaacggccagagatggacagggaattaaggtggaaacatatgcaattaatcaatcaatatactgcaagtgtgtgtatctaataatcaaccctagcttatttataagcttcgttccaaaaaaaaaagcttatttacaagggggctggttaaagtatctcatcgttaatgaagggggtccagggtgatatatatagcaggccaccacgtaaaagtccaaatttgactaggcttagtctaactaggtgttgctacgtaagtgcaacatccttctgtgttgttaccctgtccctttatatgaatcttatgctgatatgcagtccatgtcaacataacaatttaaggttttctttgacgaactgacttcggtcccttactatgaatcttatgcataggaccaaactgtatcagccaaaaaaaaactattcttatatatgtaggtgcagcaagctgctagtctactataaccagcctgtggactgagcaactctgccagcttccccctctactaccattacaatgcaagccttactcatctttgctatacttgcagttctcgcaggagttgtccagggacagcagtggtgccagcctttctcctgcggccatctctcaaacataagtcatcctttctggcggagaggcgaccctcacaggtgcggtgtttcatcatatgagctagagtgtagcagtggcaaggccaccatccagatcaatacaggaacatactatgtcactagcatcaactacaacgattcgtccttctgggtcgtggacgccaacctgcaggatgcaaacagcaactgccctcttcctcgctccaatcatcgtcctttcatttgggggattccagggccaagctacaccagggaattgactcttcagggaatatggtgggcgacctttgtcaattgttcgcaggcagtgaagaacaataacaagtacatacatgtggattgccagaacacgagctcttcatttgtctatgtgctgaatgtcgcaccatattacgctcttatggaaaatcttgagccttcttgcggatacttggccatgattccagttagttggactcctgccagtggtaaaaaataccaatattttgctgagttgatgaggaagggattctctgttcgctttccttttgtcttagatcatccgactgcatttgagctaatcaagcagtgcctaaaccggtcaattcggtgagtttcggtatcttagtttaattttgcccataaataatcgttttttaagtaaatacttggtaccgttgttaagactttttttctaccatgtcattggccttgcagtggttttcgtgaagaaccattctccactactgcacatgtcaaaaatcggattgcggacattgtttttatggacttgatcttttgggcatgcataattggcaaaacgagccaaacatcagattattttgagacaccactctatatggtggagatgcttcatgggaaaagaatattttattcaggatttgtcctacaatttgtcatgtggacagtaaagtggatatatggtactctacaatacacatgctttttataaacttgttgttatgctacatgtgattgatgccgctgcatcactctaagcacatcattcccatgtatctaaacatgtttttatgcagtcatatgcaggtttgtgttggcgccactggcactattgacttttcttgcacaaagatactggaaaacaaggatcacaatcgatgcagttgagaagtttctgcgaatgcagttgatgcttggcccgacgaggtacacctacacagatatcattgcaatgacaagccatttcagagacaagctaggtcagggtggttacggttctgtattcaagggtgtcatactcccgggtgatgtttacgttgccatcaagatgctagacaactacaattgcaacggagaagagttcatcagtgaggtctccaccatcggtagtatccatcatgtcaatgttgtgcgtctggtggggttttgtgcagaggaaatgaggagggcactagtgtacgagtacatgccccatggatctctcgacaagttcatcttcgcacctgaaaagagcttctcctgggacaagctcaatgagattgcactgggcattgctagaggaataaactacttgcatcaagggtgtgatatgcagattctacattttgatatcaagccacacaacatccttcttgatagcaatttcgtcccaaaagttgccgattttggcctcgccaaactatgcccacgggacaacaattatgtgccagttagcgctgcacgaggaacagtaggttatattgctcctgagatgatatctcgaagcttcggtgtcatatctagcaaatctgatgtttacagctttggaatgcttttgttagagatggctggagggcgaaggaactctaagcagaacatgtcaagctcaacccaggtgtattatccatcattggtgtataatcaactcattcaacaagagatgggtgagatcaccaataccttgaatatgcatgagctggaaaggaagttgtgtgttgttggtctacattgcattcaggtgaagcctcctgatcgtccaacgatgagtgaggtcatagaaatgcttgaaggtgatgttgatggtctgcagctgccttccaggccattcttctgcgatgatgaacccctgcccctgttggtggattcttaccgtttctcctctgagctaactgaaatctcagaggaggatggctgaagcttatgcatgtgctttgatgccaaaaagtcaaggtactaagttggttgttgttttttctcagataaggtggtaggtaggttgtaaaactgaggctacatattgttgtaaacagatgtttcatcgcattgttgtaatttgaaagtgattttttttagggaataacagagtataaagctgg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0113400, RefSeq:Os01g0113400