Os01g0171200

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Revision as of 04:23, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0171200| Description = Conserved hypothetical protein| Version = NM_001185270.1 GI:297719674 GeneID:9269359| Length = 5612 bp| Definition ...")
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Gene Name

Os01g0171200

Description

Conserved hypothetical protein

Version

NM_001185270.1 GI:297719674 GeneID:9269359

Length

5612 bp

Definition

Oryza sativa Japonica Group Os01g0171200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:3680798..3686409

Sequence Coding Region

3682259..3682341,3682434..3682523,3682770..3682866,3682944..3683041,3683310..3683381
,3683451..3683520,3683988..3684110,3684212..3684370,3684443..3684730
,3686107..3686388

Expression

GEO Profiles:Os01g0171200

Genome Context

<gbrowseImage1> name=NC_008394:3680798..3686409 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:3680798..3686409 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggctacggcttctccaccaagctcacggccttcttctggccatggcgcttctcgccgtggcgcttctcgccgccgccctccacgccgatgccgcgcccgcatctgccgcccccgggagctccttccccgacgcctatggcgaccgcgcccgcgctgcacaacttcccccacgcaagcagcagccgcaggtcgcctacgctctgcgacgggcttccgctacctcatcggcacatctccacggcgccacctcccggtccttcaccggcgtcgccaccgaagaccattgtcaagctcgcatcatctattggcacggtggtccctgtggctttatctatagtaccatatttctaccaagtctacacaggaaattttgagaggacaatagaagtgtatggtgcccccgccatgttggctggatcaattaacagcataatttggttgacgtattcaataatggccagcaaaaaggatcttaaccttgctcttatcctgatgcatgcattactttgcatgtcgacattcacttacttgatgtgtatctgtgcttgtaaaagagccactaaagagggttatattcttggagcctttttcataggatgcttatcagccatatccattgttgtgcactgggacttaaacccatcgaaggttgtgaagattatattcagatgttttggtggaattagtttgctgtcttgccactatattctgctgaatgatattttggggagtgttcccaaaagatctcagaaagttgctactggatttgaccttattctaagttgtataacgaacttggtgactttcatcataacttttcatgatcatcctgagcacactacttctctgatcacttctggagtagggtttgtcctcaatgttgtggagatcgtacttcttgtcatagtaacaattatgggctacttctttccattgtctgagcatccagatgctgatgttgaagcgtcacgtcacatatcagccacaagagttactggtgtaggcatgataccacttgaagatgcactaggaacccctgaaactgatgattttatagctgtactcactcatgagccccaggtgccccagttcgaggtctcttacctgattttgcaagtgaggaatgagtttgaaatttactctcttagatccatggtgaatcccaatgtacaaattattactcgagtgctatttgtagaagtaattcaaaggacaatgatgcggattgagcgtgaccactacattcaaattcttttacaagcctcggggatagctgctgcagaaccatacccattgatgcttagggatgttgaaattcactaccagaccatccgtaatcagcatgaagctctcccgtaa</cdnaseq>

Protein Sequence

<aaseq>MGYGFSTKLTAFFWPWRFSPWRFSPPPSTPMPRPHLPPPGAPSP TPMATAPALHNFPHASSSRRSPTLCDGLPLPHRHISTAPPPGPSPASPPKTIVKLASS IGTVVPVALSIVPYFYQVYTGNFERTIEVYGAPAMLAGSINSIIWLTYSIMASKKDLN LALILMHALLCMSTFTYLMCICACKRATKEGYILGAFFIGCLSAISIVVHWDLNPSKV VKIIFRCFGGISLLSCHYILLNDILGSVPKRSQKVATGFDLILSCITNLVTFIITFHD HPEHTTSLITSGVGFVLNVVEIVLLVIVTIMGYFFPLSEHPDADVEASRHISATRVTG VGMIPLEDALGTPETDDFIAVLTHEPQVPQFEVSYLILQVRNEFEIYSLRSMVNPNVQ IITRVLFVEVIQRTMMRIERDHYIQILLQASGIAAAEPYPLMLRDVEIHYQTIRNQHE ALP</aaseq>

Gene Sequence

<dnaseqindica>4069..4151#3887..3976#3544..3640#3369..3466#3029..3100#2890..2959#2300..2422#2040..2198#1680..1967#22..303#gggaggcgcaacgcaagcgcgatgggctacggcttctccaccaagctcacggccttcttctggccatggcgcttctcgccgtggcgcttctcgccgccgccctccacgccgatgccgcgcccgcatctgccgcccccgggagctccttccccgacgcctatggcgaccgcgcccgcgctgcacaacttcccccacgcaagcagcagccgcaggtcgcctacgctctgcgacgggcttccgctacctcatcggcacatctccacggcgccacctcccggtccttcaccggcgtcgccaccgaaggtacgcacgctcacggctcacctcaccctctccatgttgggatttggccatttgggcctcgacttcgattcggcgatttggtagacctagtagcgcggcacggcggggttggggaagccggcctccgagaggagaatggtgaccgcagcagtgtggaggcgtcaggcggtggccactggccagtacggcgacttgcggctcgccggagtatgttgatttcggcctaggcacctttgtagtatgcatatgacttcctggttggtcggtataatactccaaataactacaatagtgttcttgcttatcgtgaaattatgctgcactgatcaacagtatgtgattgaaattttactaaaattttactgctacttgttaatacaggttgtgaacaaattagggtgttcttaggtataggatgctgtgatgaagtaaaagcccgatatagtagatacgaagtacatagtataatagtgtgcctgcttattgttaaattatactgcattgatcgatattcaatagtaatgtgattgaaattttactggtactttgttaatacaagttattgcgaacaaattggggtgttgtctgataggatgctgtgatggagtaagtgcatgttgtcccttgtggatacacaggacacaacactaggagtaaattttaatttgcaattatattacttctacatttattactagttctaatttgcttgatgtgatagttaagcagatcggttttatctggtgtacacatttcggtcaaagtagcaaatcgtgcatgcggagtacagaattccttgttacttatgatgggtctttgggacacccgatcaattgtgttttggatttgctaccgttggtcggtctagataatcataattgtgtttctgtgaattctgcattgatcatgtgtgagtgaaattataccggtacaatacttgttacaagttgtgaacaacttggggtgtgttgtcaggtagaatgctgtaatgtttcggcttgttcgttgttaccccagttaagaagccgctgtttatgttctggaggatataaataccttctcccctccaatcttccaatatcttcaaatacaaatagtgttaatgtactagtcgttcaatcaatcaactctaatttatttatttttctatcttgttcttaactaccctcctaggctcctacctacaaccatcttttctttttcttttttccatccttaatctctttgaagagagcacaataatcccttatattatcggttggataaagtgtattgctttgctaatgaaaatcgggatattttcagaaaaagaatatattagttgttttcttatattagttgctttgttcccttatattagtttttttttttaccagaccattgtcaagctcgcatcatctattggcacggtggtccctgtggctttatctatagtaccatatttctaccaagtctacacaggaaattttgagaggacaatagaagtgtatggtgcccccgccatgttggctggatcaattaacagcataatttggttgacgtattcaataatggccagcaaaaaggatcttaaccttgctcttatcctgatgcatgcattactttgcatgtcgacattcacttacttgatgtgtatctgtgcttgtaaaagagccactaaagaggtatgtttcctttttattcttttatttgttaaccacttcatgtaattttcctcatgttttatatttttccagggttatattcttggagcctttttcataggatgcttatcagccatatccattgttgtgcactgggacttaaacccatcgaaggttgtgaagattatattcagatgttttggtggaattagtttgctgtcttgccactatattctgctgaatgatattttggtctgtttaacttttcgtattaagttctgtcgtacgtcgttgcattggcatcagtaaataatgatttttctctccgatcccttttctttttctctttacaggggagtgttcccaaaagatctcagaaagttgctactggatttgaccttattctaagttgtataacgaacttggtgactttcatcataacttttcatgatcatcctgagcacactacttctctggtacaaacctataactattctttctagcacactagctagcagcagtggatttatgttaaataaaagggttaactagatcgatgacattataacttttatagttttaaaatatatcattattattcacatgattaggaaccatgccagcacaactaagcctaaattggatccataccacaccgtatgcctaagatacattttttttcttcctttctttttgtatataccaaaatgcaaaacaactgtgaaagtacagttttgtatctttcttttggcattttggctcatacaataatgcagtagccaaaataggattcaatacatttcttgggcgtacattgtggcgtgggtccaattttgggcctattgtggtggtatgatatcgattatatgaacactagtagtatatttcaaaaccgtgaagggcataattttaattaacactaactaataatgctattattcagatcacttctggagtagggtttgtcctcaatgttgtggagatcgtacttcttgtcatagtaacaattatgggtaagaacatttcataaattgttgatagttatctaatgaacctgtaaataatagaggtttctattgtaggctacttctttccattgtctgagcatccagatgctgatgttgaagcgtcacgtcacatatcagccacaagaggtatttgtttttttagtttattatttaagagtttgtcctaaaatatagctacttctcaatatgcttttttttttgtctcaactaataataaccatccttcatgtaatttcttcacttactcatctaaaccaatcacatttattctcatttaattttacctctattcttaattctgtaaaaaaaatttaaaggtacctatatttttaagatggaaatagaatctatttggatgctgatgtatggtttcaagcttatgattagcacatagttactggtgtaggcatgataccacttgaagatgcactaggaacccctgaaactgatgattttatagctgtactcactcatgagccccaggtgccccaggtgatatctcaccaataaaaatactcggtagtatattttatttttctgctaactaactatgatgtctttctccacagttcgaggtctcttacctgattttgcaagtgaggaatgagtttgaaatttactctcttagatccatggtgaatcccaatgtacaaattattactcgaggtactactatttttcagtcaactattattattgggtattgatagggaaaatgttttaaactctcgaggggaaatcctctcgtttgttcaaacatcatttaaaaatatatacacactactccacaaaatttcaagtcaatttgagagaaaaaaaaattacatgagggaaaatctcttcgagggattaaaatcccctcctggtattgatgtagtatggttttagactcatgtatctgttattgtatagtgctatttgtagaagtaattcaaaggacaatgatgcggattgagcgtgaccactacattcaaattcttttacaagcctcggggatagctggtaacttactttcctactagtggcaggactaagcttgggcatttcttgcatgtggtattgttgttgagcttaattagtctctgctgcaacagctgcagaaccatacccattgatgcttagggatgttgaaattcactaccagaccatccgtaatcagcatgaagctctcccgtaatagagctgcaacactggcatgcacttcttctcagttaatgattgtctttcattacttcttctcaatgctgtaatgctagtagattaatactatcttaatgtgtgacacaggtccggtgccaaggcacagaaacttgaggcgaagagatatgacaactgattgaactgagttgagcgtataggagtggagatgtgacgacagaattcagaagagagatgtgttctccgtttggatgttgcagtagtatgcttgtacggttctaccacatactactccgtattgtagtagtatgtcctcacaaatgagcccttctaaacgtcctcaatgtgacctggcgtgtccataatgagtcaggacacgataagcaatcagatcacctgcaccgatgcattgcacaggcacagctccaaagaatatattagttgtcctccgtttcatttggattctccgcaaggggatcgcacattgagatgaacgtggattgtccgtactactcgtcggcgcgagcgcgacgcctcctccctcctccgcgccatctcccgtcgcaccaggtgtgtgcattgcattacgttctccgttggttaattcgtccggccaaatgcatatgcgagcgtgcccgcctgacgcgtacttacgtctttgtcttccaggtcaggagcctgacgcgtcgccgtcgatccgcgggaggaagagaggcggcagcgtaccactactagtctactaccgctgcgctgccgtcctcgacgtcgacaccgcgcgcgcgcaagcaggtgagacgccgctgctcctggtggccacgttcggccacaccgcgagacgcggcggccggcctacctacctcctggagcgcgccgccggcccgtccacgcctgaccccgacgtacggcggcgacatcacaacgccgccgccgcctcctgtctcgctctccaggcggtgagccacggcgcgccataagccagcgtgctcagcgccggccccttggttccccgcgaacaatcctgaccccacggcgagtcggcgacgtcgacggatactgagagtgcatccacccccgtcagccacagctgcctcggtgtccaccagcctagcaagcaagccatgtcgcccatggccatgccggctgccaatctgcccggcgccccacggcgcgtcgtcagcgagtcggcggctcggcgccgtgctggcttgggcatgggctgtcggaccagagagaacggtttgcataattgcattgtcgtgtactcgttcgtatcgggtgagaatgtcaccaatggaagcgtaaagagagcaagtacgttttcttcttcagaattcgcctagattcgtccgttcgttttctttgagtgtgcttgttcagttgtatatcctcctttctacatggctacatctgtaaatgcaaagtactcctacatggaactagtatggatggaactgctgccccatccttgattcctggagtc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0171200, RefSeq:Os01g0171200