Os01g0180000

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Revision as of 04:25, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0180000| Description = Pistil-specific extensin-like protein family protein| Version = NM_001048739.1 GI:115434891 GeneID:4325349| Length =...")
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Gene Name

Os01g0180000

Description

Pistil-specific extensin-like protein family protein

Version

NM_001048739.1 GI:115434891 GeneID:4325349

Length

2206 bp

Definition

Oryza sativa Japonica Group Os01g0180000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:4178207..4180412

Sequence Coding Region

4178749..4180311

Expression

GEO Profiles:Os01g0180000

Genome Context

<gbrowseImage1> name=NC_008394:4178207..4180412 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:4178207..4180412 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaggggtgcggggtttctgctgctcgttgtgttcgccgttgccgtcgccggtggggcggtggcggcggcggcggatttggacggcggcgatggtggtggtggtgtggcggcggagtggcggtttccgagctcgaggatgcgggacgcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctcaccgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgctgccgtgggatcgccgggaggtcgccgtcgccggcgtcgacctcaaccacggcgacatcgccgggtacctgccccccgagctcggcctgctcgccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccctccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggttccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgacttcgagggcggggtgccccgccagctgttcgaccggccgctcgacgccatcttcctcaaccacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatcgtcctcgcgcacaacagcttcggcggctgcctcccggcgagcctcggcaacatgtccgggacgctcaacgagatcttgctcatcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgacggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggatgaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaaccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaactgcgccgcgttccagtgcaagccgttcgtcccggccctgccgccaccatcgccgccaccaccatcaccgccgccgccttcgccaccgccgccatccccaccgccaccgtcgacatcaccgcctccgccttcaccaccaccgccatctccaccgccaccatcgcctccaccgcctgcaccaatcttccacccaccgcagccgccgccgccgccgccaccacccgcgccacaaccgcatccgccatgtccggagctgccgccaccaccaccgccgccgccaccctgcggcggcgcaacaccagcattgtcaccaccaccaccaccaccttactaccccgggccatggccacctgtccatggagtaccatatggctcaccaccacctccccctctgcaacaccacagctcatggccaccgatccacagcgtaccatatggatcaccacctcctcccccgctgcattga</cdnaseq>

Protein Sequence

<aaseq>MRGAGFLLLVVFAVAVAGGAVAAAADLDGGDGGGGVAAEWRFPS SRMRDAYVALQTWRREAIFSDPGNLTADWVGPDVCNYTGVFCAPLPWDRREVAVAGVD LNHGDIAGYLPPELGLLADLALLHLNSNRFCGVLPATLRRLRLLHELDLSNNRFVGRF PEVVLDMPALRFLDLRFNDFEGGVPRQLFDRPLDAIFLNHNRFRFDLPDNFGNSPVSV IVLAHNSFGGCLPASLGNMSGTLNEILLINTGLSSCLPPEVGMLREVTVFDVSFNRLA GPLPSAVAGMRKVEQLDVAHNLLTGAIPQAVCELPRLKNFTFAYNFFTGEPPSCAHAV PRYGDRRNCLPNRPAQRTLRQCAAFFARPPVNCAAFQCKPFVPALPPPSPPPPSPPPP SPPPPSPPPPSTSPPPPSPPPPSPPPPSPPPPAPIFHPPQPPPPPPPPAPQPHPPCPE LPPPPPPPPPCGGATPALSPPPPPPYYPGPWPPVHGVPYGSPPPPPLQHHSSWPPIHS VPYGSPPPPPLH</aaseq>

Gene Sequence

<dnaseqindica>102..1664#ctcctcctctcctttctctctctaaacctctctctcctctctctctctctcttgagttcttggttgatcgccattgccgcggaggagctagaggagatgagatgaggggtgcggggtttctgctgctcgttgtgttcgccgttgccgtcgccggtggggcggtggcggcggcggcggatttggacggcggcgatggtggtggtggtgtggcggcggagtggcggtttccgagctcgaggatgcgggacgcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctcaccgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgctgccgtgggatcgccgggaggtcgccgtcgccggcgtcgacctcaaccacggcgacatcgccgggtacctgccccccgagctcggcctgctcgccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccctccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggttccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgacttcgagggcggggtgccccgccagctgttcgaccggccgctcgacgccatcttcctcaaccacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatcgtcctcgcgcacaacagcttcggcggctgcctcccggcgagcctcggcaacatgtccgggacgctcaacgagatcttgctcatcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgacggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggatgaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaaccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaactgcgccgcgttccagtgcaagccgttcgtcccggccctgccgccaccatcgccgccaccaccatcaccgccgccgccttcgccaccgccgccatccccaccgccaccgtcgacatcaccgcctccgccttcaccaccaccgccatctccaccgccaccatcgcctccaccgcctgcaccaatcttccacccaccgcagccgccgccgccgccgccaccacccgcgccacaaccgcatccgccatgtccggagctgccgccaccaccaccgccgccgccaccctgcggcggcgcaacaccagcattgtcaccaccaccaccaccaccttactaccccgggccatggccacctgtccatggagtaccatatggctcaccaccacctccccctctgcaacaccacagctcatggccaccgatccacagcgtaccatatggatcaccacctcctcccccgctgcattgatagaatttctccgaagaatgtttggaaacatgcatgtgttccgctcttgctcctcacatccggcaaatcgacagcagcggaagtcgcacacaagtatacgtggtcattatcgttcttattagctactagtgttcttggttggttgattgatgactaccggcgtgaagagcgtagtaaggtgcacaaaattttgtttggttatgatttgtcggcgtcagcatcgaaacagtttgtgttgctgtggtgttgaaagggattgggaagtggtgggggtgtggggatttggaggatttgggaacatatgattgatggctaattgggttgtgaataataaggaaaagtttgagagggacaggagggtttggcagaggattgtaggtgcagggatatatgtggttgtatagatgagaatcatgagttcagttcagttaaattcagtagtagtaagacataagttttagaacaaaaggattctgtgtcatttcttcctgctgtatcacaattacttctggctattcaattcttattattatttagtatgg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0180000, RefSeq:Os01g0180000