Os01g0180900

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Revision as of 04:25, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0180900| Description = Prolyl 4-hydroxylase, alpha subunit domain containing protein| Version = NM_001185276.1 GI:297719686 GeneID:9271331| ...")
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Gene Name

Os01g0180900

Description

Prolyl 4-hydroxylase, alpha subunit domain containing protein

Version

NM_001185276.1 GI:297719686 GeneID:9271331

Length

5954 bp

Definition

Oryza sativa Japonica Group Os01g0180900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:4263181..4269134

Sequence Coding Region

4263181..4263615,4263945..4263992,4264338..4264514,4264670..4264826,4264958..4265041
,4265785..4265909,4268100..4268218,4268535..4268643,4269087..4269134

Expression

GEO Profiles:Os01g0180900

Genome Context

<gbrowseImage1> name=NC_008394:4263181..4269134 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:4263181..4269134 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcctcttccccgccgcgccgccaccgtgaggatccgccgcggccagatccaccgcgtcaccgccatgccaccgccgccgcagcaagccccggagccggccgggctgcaactgctgctgcagccggaggtggtggcgccgaaccacccgccgcccgctccaccggcgccggcggcggtgcccgcgccgccgcagccgcagggggaggcgaggtaccgtaggccgctggtgcggctgcaggccgtccccaacgaggaccacgtccccgacaactacggcgacggccccgacgagctcgggatcacgccggcggtgtaccaggcgctggagcgccacctgccgccggatctcgccggcgcccccgccgaggtgaagcgctacttcatgcgcagcgtcctccgcaactacgtcccctcgccgtcgcagcggatcaggacgcagaatcagagggagtacagggaaaggatcttgtccgcataccagccattacatccggagctgtacacaaatgatccatcaactttcatcctaccggcatttcttcaagccataaatggcaacaccgaagaaagcatcacaagcataatgatggagccagcaccgggagtgtttgcatttcctatgctgaagccctcattctgccagatgttaatgtcagaggtgaacaattttttgaggtgggcacaatcagcgaatcaaaggataatgagaccaacatccttagataggcatgggagaggtgctgccctctctgattttggcttgcaagagatgttagacaatctgatgaaggatttcatctcaccaatgtctacagttcttttccctgaagttggcggcaatacactggactcccaccatacattcgttcttgagtatggtgaggctgatggtgctagaggtttccatgtggatgatagtgaggtaacactaaatatctgccttggcaaacacttcactggcgctgacatgtacttccgtggtatacgttgtggaaatcatgttaattcaggaacacatgatgaggagtattttgtacatcccaacgtgcccggacaagtcctgctgcatcatggtagtcacaggcatggtgtcttctcagtaacatctggacggagggttaacatggtcatgtggtgcaaaagctcagtgttcagggagatgaagaaattcatgactgatttttctgggttttgttgcgagtgccagtttcagaggacggcaagacaggtgcaacatcttcaggaattgacggctcgtatctctatcagcggacaggagtcagaagacgaaactccttaa</cdnaseq>

Protein Sequence

<aaseq>MPLPRRAATVRIRRGQIHRVTAMPPPPQQAPEPAGLQLLLQPEV VAPNHPPPAPPAPAAVPAPPQPQGEARYRRPLVRLQAVPNEDHVPDNYGDGPDELGIT PAVYQALERHLPPDLAGAPAEVKRYFMRSVLRNYVPSPSQRIRTQNQREYRERILSAY QPLHPELYTNDPSTFILPAFLQAINGNTEESITSIMMEPAPGVFAFPMLKPSFCQMLM SEVNNFLRWAQSANQRIMRPTSLDRHGRGAALSDFGLQEMLDNLMKDFISPMSTVLFP EVGGNTLDSHHTFVLEYGEADGARGFHVDDSEVTLNICLGKHFTGADMYFRGIRCGNH VNSGTHDEEYFVHPNVPGQVLLHHGSHRHGVFSVTSGRRVNMVMWCKSSVFREMKKFM TDFSGFCCECQFQRTARQVQHLQELTARISISGQESEDETP</aaseq>

Gene Sequence

<dnaseqindica>1..435#765..812#1158..1334#1490..1646#1778..1861#2605..2729#4920..5038#5355..5463#5907..5954#atgcctcttccccgccgcgccgccaccgtgaggatccgccgcggccagatccaccgcgtcaccgccatgccaccgccgccgcagcaagccccggagccggccgggctgcaactgctgctgcagccggaggtggtggcgccgaaccacccgccgcccgctccaccggcgccggcggcggtgcccgcgccgccgcagccgcagggggaggcgaggtaccgtaggccgctggtgcggctgcaggccgtccccaacgaggaccacgtccccgacaactacggcgacggccccgacgagctcgggatcacgccggcggtgtaccaggcgctggagcgccacctgccgccggatctcgccggcgcccccgccgaggtgaagcgctacttcatgcgcagcgtcctccgcaactacgtcccctcgccgtcgcagcggatcagggtaagtgtagctagtatacgcgcttttactatttaggcgtctcattaattaattcatttcatcaaatcaagcttcattaatttttgattctctagcagctatagtcataaatgcagtttaatttggcttcatgtacgtagtagtcagttttgcttatttacaactgttttaagtttaattaaccatgagtagtgtgtcttgctattgcatgcatatgatgagttggatatatagtgttagtgtaagtacatacgtagtgtgtgttgttaattaattaagatgaattaatcacgtcgtaacttatgtataatctggaaactcgtttgcagacgcagaatcagagggagtacagggaaaggatcttgtccgcataccaggtacgtattttcttaagcattcatttttttttaaaaaatgcactcttgcactataatcaaaatgtatacacgtattagataatatattatgaatatgtagataggaactcttttttttttgtacatgtaaaaatgctactccttaattacatgctatttgcctagctagctagctaagaaagtattattgcttgaaatgtgccatagacacatttgaattaaaaagtgtgagccacactatttgcacattttatatataggtgaacacacaaactcataggtatatcatttaccctataatatgtacacttacagattttttttttcttattggatattttcaagccattacatccggagctgtacacaaatgatccatcaactttcatcctaccggcatttcttcaagccataaatggcaacaccgaagaaagcatcacaagcataatgatggagccagcaccgggagtgtttgcatttcctatgctgaagccctcattctgccagatgttaatgtcagaggtatgtgattatattgcagcatggaatatcattttggatatatcatgtagtattattttgctgctaattgtggacactaattaattagctttgtaaacgtatatatataaggttaagcaatatcggtaatgctcgtgtggtgtttattctcgcaggtgaacaattttttgaggtgggcacaatcagcgaatcaaaggataatgagaccaacatccttagataggcatgggagaggtgctgccctctctgattttggcttgcaagagatgttagacaatctgatgaaggatttcatctcaccaatgtctacaggtcaattacttgtctcacaacttgattttcttgtaggataggaaagtagattaagattatgatattcatgtatcaaaattttcctttctttaaaatgaaacgattaatgacttaactccttgatcatgcagttcttttccctgaagttggcggcaatacactggactcccaccatacattcgttcttgagtatggtgaggctgatggtgctagaggtatgctataaacatgtaaccacgcatctatgaattaatgactagaactatatataattgtgctacataactcccttagttcattttacatttaagttttagaatatgtgttgccatactttgatcatcatatctacgctctacactatatatctagctagattgatgatataaaaactatatcaatagatttaaagtgtgaaataaccttaataatattttaaatttttaattagggagtaccctaaatatgtacttatagagatatatattacatgtcgacactcaaaccatttgtgtacatgacatattacacacacttttgatgcaagcgcatatatagctaggaagtaatgttttaccatcattttcacagtagctatgtactctctctgtttttattttttgaaaaaaccaactacttctgccacatccaagtactatggaaaaaaaaaaactagtgcagtactacgtgataaaaatacatcaataattaattctatatctgtgtctcctgtagctatcggaaactgtgccgcacacacgatcgaggacattttggtcttttgttgttagcactaaatttgcatcgggcttttggaaatcttttttttttctgggacatatataggggaagctatcaagctatgcatgtagaaattaaaattgctgtcctgaggtaacatattaacatgatcagctttttcttatatattctaaacaacaattgatggagattgcaggtttccatgtggatgatagtgaggtaacactaaatatctgccttggcaaacacttcactggcgctgacatgtacttccgtggtatacgttgtggaaatcatgttaattcaggaacacatgatgaggtactgattgatgtataatttgtaaattaaattaattatgcacccattttatttagatgcccattaattgccatggagcaatgcaagtttttagtaaataaaaaaactattttcttttagtgttaatgctgatcatatcatccaaacctttttattcctttgagcatttctcctttagccttaacttttctattgcttcaggggttgaaccccacaagtcatctacatcctcaccttccttgaacttagctttgtttctttttctaatccatcagtcaaacaataacatttgaatgagaggatgcatgcatggctatgaatatcgacaaaggtgttgactaaagcttgactgtattgacggccatgatgatccagtaatggttggctggaagacatttagagcgagtagaaatgtcaacactatcacaaatacagagatctctaacagctccatgaaaaagaaatccatttgagatggttctaactagatgtcaaatcactaaaaattaatctggaatgggtcgcccaatattgaacccgccacaaacgatctttaatatctcctaatttgcaaatcattacagatcagtgaataatgaatgcaaagaagaggttgttcggagctaatctttatgatctaatgcttaacctataacatgatcatgtaattcataatttcttgtgcggaatttggtatacgagaaaggcggtggctgtctcgcagaagagggatggatgagacagaatcacgagagagcgtgagggagggatgatgacagtgggcacgcatgctagggtttgggtttggggaaggagaggtcaaggagggagtaggaggtagcgggcaccaagtgcatgagaggtgacccaatcgagctatcgtttccagttgatacgacgaccaatagctgatgcgtgctcggaatcctgcctccgtgcatggggcaatgttgatagcgcaagaggcgagcacaccttctcaaaatgccatgtcagcactagcttggggaggggggggggtaatcttcaaagccattagaacctctgtgtagtcaattgcctcttttggttttgccattgaagtagaagcagtctctcgcaaatatggttgctagcttgatgaccatcgtcgctagtggcagtgataattaatcttgtaggtgtcaatgtccctccagggcatcacctacattgcttgaaatggctgtttgggtctcctccagtgctagtgaggatagggtttcattaggttttccgaaagtgggcttgccgtgtgagagattgtcgcttcacgcacagggccggtttcccccatttaaaaaggccttgcggggcttgagggcatattcacaaagaatgaaacttgactccgatcatggggcgtacgtaagggaagtgatcatacggctttggttattcatgcaagatcttgttagggaagtgcacataatcgtggggtgggccacttcccaaacgtgattctcgggttagccaagatcaaccaatagggaacatggttttccccttcgttcattggtttaagcaataaatggatttcggactttcttactattattattgttttttaaatggagagcattatactttactttatcttatcactaaaatagtagacaaacataataagaacatactgcatcccacattccaaattaacacatgcgtacgaatcaaccgatttctacaacacaaagacaattgttaaacactttgttctttgtctactggtgtatagtgggggccatataaaccgatgaacaaattagcaaaaaatgtacatagctagaattgtatagaaattctagctatgtgtgatatttatccctggctagaggattgaatgtctactatttaattcttttagcacttgtatagcagatttttatcagattaattaacacatggaatttggatgtctgaaaaatttctgtaaatctgaaagtaggtttttatttatctataagtaggaaatatttccgtaaatcttctgtaggaaaagtcatgttaaaagagatcatatctacatctaataggtttcaaaattgcattattctagtttgcagatgtgtttttgtgctcatttcctttaattttgttactgttaatgcatgattatgcaaattaacatttgacatcttatttttgcccttcaatacttatacgattcaggagtattttgtacatcccaacgtgcccggacaagtcctgctgcatcatggtagtcacaggcatggtgtcttctcagtaacatctggacggagggttaacatggtcatgtggtgcaaaaggtaacactcaatgtaatatttttacctatatttttcttgtatgtacagtatgttggctactttgtttaggtgaattaatcaatataggaattcatatagtagtatgtccatgtaaaatcatgtcccttagtttccaacacttctaataaaggtgagattccatgagaaataccagctttcttgtaaatttaattaacctgattgaattggctgttgttaatttctgggctgatctggaatcatacatgcatgaaaaaccctagtatcacctcaatttatcgatctgtagctgaagtagtgtttcttgtatatacagctcagtgttcagggagatgaagaaattcatgactgatttttctgggttttgttgcgagtgccagtttcagaggacggcaagacaggtgcaacatcttcaggaattgacggtttgttacttaacccaactccaatatatagaaaagtagaagcgatacatatatacatgaatattcagtaaattgcaagcatgcagatgccatttaatttctgccaactcccctgaagttggaaaaccaataatagcgagtacatgaaacatttaatcaggataaatattgataaacacactggaatcaatttaatcttatatactcgctttatttcagtatagccttgctaggatttttgtaacaccccacttaatttccattaatatattggccatcataagatagcatgatcttttacctttgcttctctattcaagttgcaaggcttaaatattttatttttcatatgaaactgttacattacagttagtacctatatatagctaaccagcttgactactaccattctgaaatcgtttatgatcacttgaaatatgcaggctcgtatctctatcagcggacaggagtcagaagacgaaactccttaa</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0180900, RefSeq:Os01g0180900