Os01g0181900

From RiceWiki
Revision as of 04:25, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0181900| Description = Conserved hypothetical protein| Version = NM_001185278.1 GI:297719690 GeneID:9271473| Length = 4515 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0181900

Description

Conserved hypothetical protein

Version

NM_001185278.1 GI:297719690 GeneID:9271473

Length

4515 bp

Definition

Oryza sativa Japonica Group Os01g0181900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:4296867..4301381

Sequence Coding Region

4296867..4296913,4296927..4297015,4297270..4297394,4297476..4297522,4297864..4298222
,4298386..4298552,4298800..4298846,4299148..4299193,4299586..4299669
,4300425..4300465,4300916..4301381

Expression

GEO Profiles:Os01g0181900

Genome Context

<gbrowseImage1> name=NC_008394:4296867..4301381 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:4296867..4301381 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggagggaggctcggagggagagggacgtcgcgctccatcgagtcacatggcggagggaaggggtgcgatataggttgtcgtcgtcgcacagcaccaccccgtcgtcgtcgtcgcagcgccgccctcgtcgtcgtcgtcgcagcgctgcccccgtcgtcgtcgtcgcaacgccgttcccatcttcgtcgtcatcgcaactgccgccgccgcaacagccgcggcgtcaaggtggcaaggcagccaagcggcgccggtggccagccgaggcggtgctcggtggcgcggcagcaaggcggccaagcggcgctcggccttctcctcgctggctcgctcctgcgccgcatcgccgtgctcgaccctgccaccgccgccgtcgacgtaggtgacgccgcaccctcgccacgcccatcggaatctggcaagctccacgccggcgaccttgccaccgccgccgtcgacgcagtaatgtgtgcctgtgaggtgcaactactgtacaagctaggggacaacacgctggacgaggtgaaggaggtcgtccatgtgaagcaagatgctcctccaccatcttctttcttgcccaattcctcggtctgcacttataagctacattaccttagcaccacatgggcacaagtgcgtaccatcgcccaagtcatcatcgtagtgcatgccatcacccaagggttacaatcattatttgtcaaggcatgtggggttaatatatctgtacaagtggatttatctaacacaaaagttgattatctaatcaactctgcttgtcaaaagatgagagtaaatgttaaggacacatatgcagtattatgtggaaagattttagagtacaataagcccatgacatttgatgagaagtttgatgatatccatgcgaacacatggttctacacggttgatttagtacctgcacttcaacgtcaaactcgtacaaatccgccggttctaccatggttatcagtaagatacttctcggactttgcatcatacaacatccaaaaggttttgaaccacatcactgcaatgcactgggaaaacctgagctacaatggcgctttcaatagcgacaacatcatatttcacaatggtgctgttaccatccagggtgttcttacagtacaatttaatggtgtgacatgtgcaaaagattttgcaaagctttattccatattcattgcaaaatttacaccacatggatgccttcactttgcaaacaacttcttgaaacatgcacaaaacagattcatgttacatgaagttgaggctgcattttcaaattgcctggaggaatatctaccccatgtattaaaagcgatagcgcgccttgctcaacataacccccaaggccggcagtatctagttgacgtgaagcagcaatctggaggtgctgcgaatgagtcgtatcttgctcgcctcatggaggcatgtatcttctttgtttctttggaccggtgttcatggcgggatggcggcatgctggaatacaaagaaaaacaaccatag</cdnaseq>

Protein Sequence

<aaseq>MGGRLGGRGTSRSIESHGGGKGCDIGCRRRTAPPRRRRRSAALV VVVAALPPSSSSQRRSHLRRHRNCRRRNSRGVKVARQPSGAGGQPRRCSVARQQGGQA ALGLLLAGSLLRRIAVLDPATAAVDVGDAAPSPRPSESGKLHAGDLATAAVDAVMCAC EVQLLYKLGDNTLDEVKEVVHVKQDAPPPSSFLPNSSVCTYKLHYLSTTWAQVRTIAQ VIIVVHAITQGLQSLFVKACGVNISVQVDLSNTKVDYLINSACQKMRVNVKDTYAVLC GKILEYNKPMTFDEKFDDIHANTWFYTVDLVPALQRQTRTNPPVLPWLSVRYFSDFAS YNIQKVLNHITAMHWENLSYNGAFNSDNIIFHNGAVTIQGVLTVQFNGVTCAKDFAKL YSIFIAKFTPHGCLHFANNFLKHAQNRFMLHEVEAAFSNCLEEYLPHVLKAIARLAQH NPQGRQYLVDVKQQSGGAANESYLARLMEACIFFVSLDRCSWRDGGMLEYKEKQP</aaseq>

Gene Sequence

<dnaseqindica>4469..4515#4367..4455#3988..4112#3860..3906#3160..3518#2830..2996#2536..2582#2189..2234#1713..1796#917..957#1..466#atgggagggaggctcggagggagagggacgtcgcgctccatcgagtcacatggcggagggaaggggtgcgatataggttgtcgtcgtcgcacagcaccaccccgtcgtcgtcgtcgcagcgccgccctcgtcgtcgtcgtcgcagcgctgcccccgtcgtcgtcgtcgcaacgccgttcccatcttcgtcgtcatcgcaactgccgccgccgcaacagccgcggcgtcaaggtggcaaggcagccaagcggcgccggtggccagccgaggcggtgctcggtggcgcggcagcaaggcggccaagcggcgctcggccttctcctcgctggctcgctcctgcgccgcatcgccgtgctcgaccctgccaccgccgccgtcgacgtaggtgacgccgcaccctcgccacgcccatcggaatctggcaagctccacgccggcgaccttgccaccgccgccgtcgacgcaggtgagtagcggggtcgtcgtcggggatgcgctggatcctcgccgccatgggggccgccgaggaggccgcggcgtccgcggccgccaccgccgccgtccagtgctcttcgtcggtggtgccctccgtcccggctctctctctcttctctctcaaccctaaggacaacaaagtcatttgactgcgctgtttgacactgttaggactaaaaacagatggaatagtgtggagggcgcgataaagttcgacgatggtataaagggaggcttgaactttttagtgacagaaggcaggggtcatcttttttaacgcgcacaggtaaaaatctccaccaatcaccatatcacccgcgtatccttgaattgaattgcttccctgttgcaggcaaaagcaaaagtaaaagcagctggacagctggttgcgtgtggctcgctgggtgtgtgtgtcctgcagtaatgtgtgcctgtgaggtgcaactactgtacaagctaggggtagctagctagcgcctagggttagcgcccagagccccagaggaaggcataggctatcgatctctccctctctgccctgcctttcttgttcgctcgcttagagagagaagcagcatggagagcggagggccgggcgggtagcagctcccctcagttcccctcagttcttcttcctccctcagttctttctccacctcagtgactcccacagagaccatgattcactccggcggccgcggccgccgccgccgccgtcgccgtcgccgcgggagcaaagggccgtacgagcgcggcggcggcggcgacggggaccaagctgccaagggctgcatggacgcggcggcgacgggcgcaaagacagttctccggcgactctacgctgtgcaagaagaaggtgatgatccgaataaaacttttcttttacgctggtgttttttcgttctgtcgtgtgcgtgtgagcgtgactgcgtgagcccttagatcttgcattctcacttcatctttccccatcacaccctaaacctcaaacgcatcacgtactccatacaccacactatcgatcgagaaaggatgagaggtactgctcctagctagcctgagcaccgcagcatgttcaactgttgtaaaacacatctaaaaaatggtttgaaaaatcagaaaaagaaaaatcaggtgcgcttgacaagatgcgagcaatctctttcttgctatctgcccttgcttataatcttttctttgggttgtcttgactgcaggacaacacgctggacgaggtgaaggaggtcgtccatgtgaagcaagatgctcctccaccatcttctttcttgcccaattcctcggtaacaccctctaattgtcgcatatataatttcgtgcaccgctagagatttggatgaaaccgccagtttaatttattttcgtgtcggtgttcacccccccccccccaggtttaatcattttcattacggtgttaaaccacaagatttattatgcaatttggtgagggtggaaacctgacaggtttatccatttttgagttattgtagccgtcaaggaaataagttggaaccgccagacaaagcaaataaaattttaactgcaaccactatttcacagctccgctaatcaaattgaacatgacccattccacctgccaatcaaaattactaaacatccaacagttcaatagttgaaccatttaattaataaaacatccatcaatccattacaggtctgcacttataagctacattaccttagcaccacatgggcacaaggtaataaaacaacatactgcatcccaaataccaaacacatcaccaagcaaaatgttaggctcctatctatttagtttcaaccataccaaatggtctcgatggaactgatcaatgttgctcttgtgtagctttcgttcgcagcaattttcattcgctatcttcatagtcaccatccagatcactgaaattattatcacaatctatgttgaatatgttgtcaccacctaggtcagtaaacctattgttgtcattatcggagtcaacgttcctgcatgtatcagcatctgattcctcattgcagtgcgtaccatcgcccaagtcatcatcgtagtgcatgccatcacccaagtcatcatcgcagtgcataccatccccaagtcctcatcgctacccatgccattttaagtcagagcaacaatgtgataacctcatttttagcttagagatcaatctgtatacattaagtaatgtgtgcgccatttttttaatgcattgctgcacttcatcttactaacaagttttaatcaatctcgcatttgtttttgttgtcatatgttgatgtttatatgctctttttgctgattcttatttgcaggggttacaatcattatttgtcaaggcatgtggggttaatatatctgtacaagtggatttatctaacacaaaagttgattatctaatcaactctgcttgtcaaaagatgagagtaaatgttaaggacacatatgcagtattatgtggaaagattttagagtacaataagtcaataagtcactgtcagactatcctttatatcggaattcaacgattgaaatccgttttcgaggaagagccggccagtgagtgttttttgtttttaagtgatgttaatttcctatatttatacatgtctctaacattgtaacattgtgtgtcttttttgtaggcccatgacatttgatgagaagtttgatgatatccatgcgaacacatggttctacacggttgatttagtacctgcacttcaacgtcaaactcgtacaaatccgccggttctaccatggttatcagtaagatacttctcggactttgcatcatacaacatccaaaaggttttgaaccacatcactgcaatgcactgggaaaacctgagctacaatggcgctttcaatagcgacaacatcatatttcacaatggtgctgttaccatccagggtgttcttacagtacaatttaatggtgtgacatgtgcaaaagattttgcaaagctttattccatattcattgcaaaatttacaccacatggtattccattgtactttaatgatctgcttgagtacttgaggaattgtccaaatggagagaattccaatgatgaggctattgtggcatttattatcaatcacccctgtctccaatcttatttagagaggatgtcacaattagagcatcttgataacatttatcctagacatcctggacattctacaacaaatatatctgctctgggaacattttcttggcaagacaaagtcgtcaggtcccagaattacgtcgtgcttttatttatggtcccaatggaagagcatatttggtaaatggagtgtggcataatctaaatcctttgtatactaatgatccaaaaggatgccttcactttgcaaacaacttcttgaaacatgcacaaaacagagtgagttcagtactactccatttctactgttcaaaattttaaccatcttacatgaagttaatattttcctgtcctatatagttcatgttacatgaagttgaggctgcattttcaaattgcctggaggaatatctaccccatgtattaaaagcgatagcgcgccttgctcaacataacccccaaggccggcagtatctagttgacgtgtaagtcgtgtagtctttagcatgtattaattgatttcaaatacaaattcttttgcacgtgaatttagaaagtggattgttatttcttttttgcaggctttcgaacaaaaacgcagataaatcgtcaggaaactaggttggagagatttcgtgacaggaaactagattcatagatgtaagtaagacaaattgatcaaaattgacttatcattatattcttcagaccatcattgcattgttatgttgatatgtaggaagcagcaatctggaggtgctgcgaatgagtcgtatcttgctcgcctcatggaggcatgtatcttctttgtttctttggaccggtgttgtatgtgttgcagcatggcgggatggcggcatgctggaatacaaagaaaaacaaccatag</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0181900, RefSeq:Os01g0181900