Os01g0232300

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Revision as of 04:31, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0232300| Description = Similar to Zinc phosphodiesterase ELAC protein 1 (EC 3.1.26.11) (Ribonuclease Z 1) (RNase Z 1) (tRNase Z 1) (tRNA 3 en...")
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Gene Name

Os01g0232300

Description

Similar to Zinc phosphodiesterase ELAC protein 1 (EC 3.1.26.11) (Ribonuclease Z 1) (RNase Z 1) (tRNase Z 1) (tRNA 3 endonuclease 1) (ElaC homolog protein 1). Splice isoform 2

Version

NM_001049037.1 GI:115435487 GeneID:4324278

Length

7157 bp

Definition

Oryza sativa Japonica Group Os01g0232300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:7324040..7331196

Sequence Coding Region

7328246..7328410,7328494..7328544,7329138..7329622,7329704..7330307,7330697..7331005

Expression

GEO Profiles:Os01g0232300

Genome Context

<gbrowseImage1> name=NC_008394:7324040..7331196 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:7324040..7331196 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggactttttcctcctatgtgcagtaaaaacatggaaattcctatcctgaagggtagtgcaaggatatcatcacgtcttcattttgtatgccctcatctcttcccatcctctggattttggcctgtggaacctataaatgatgttgattcagagaagaataaggtttcttcattgcaagcctgtgaaagtgtgtcagcggctaatcttctaaagtttcatctgcgtccatatgctcaactggggctggacagatcgtctataccaagccttactacttatggagatattgtagatgagctcttgtcggagatcccagagattaaagaagttcctgaacagattagcaagttctggcaaagtaattcagttggcaagcatatgctcatggttgaagagccatggattactgagaattcctctgtttgtaattttgtagacgaaaatagtaattcaggtaagttacaagatggcactccattgagagcaagtggctggagaaagcacccaaaggacactcctgatatcccttgctgtgtggagaatgcaacaagagaagatatggaaattacctttttgggtacgggttcatcccaaccttcaaaatatcggaacgtaagttccatatatattaacctgtttacacaaggaggtatacttcttgattgcggtgaaggaaccttagggcaattgaaaagaaggtttggtgtaagtggtgctgatgatgctgtgaaaagtttgaagtgtatttggatttcccatattcatgctgatcaccacacaggtgtagctagagttcttgctttgaggtctaaattgttaaaaggggtacctcacaagcccttacttgttattggaccaagaccacttgaaagatttctaaatgcatattcaacactcgaagatcttgatatgcagttcctagactgcaggcagactttaaagcctagtatagaggcttttctcagtgacaatgctactgaatctgccacatctcaacttggaagcactatatttgctcctggaagtaaaatggagaactacagccggaagcctgcaagtccaagagatactacagctctaactaatttgaaagatgtcctacatgaatcaggtttggaagttctttacagtgtcccagttctgcactgtccacaggcgtttggagttgttctgagagccaaggagaaggtgagcagtgctggaaaagctattccaggatggaaggttgtttattcaggtgacacgaggccctgcccagctcttgtagatgcgtccagagatgccactgtactaatacatgaggcaacatttgaggacagtatgaaggatgaggcgatcgctaggaaccatagtacaacaaaggaggccatagcagtaggcacatcagccggagcataccgtataatcttgacccactttagccaaagataccctaaaatcccagtttttgatgaggttgatatgcaaaagacttgcattgcgttcgacctgatgagtgtgaatctggcggacttgccagtactgccaaaggttcttcctcacctgaagctcttgttcaaagatgagatggtggttgacgaatctgatgagatccaggaggctgttatgtag</cdnaseq>

Protein Sequence

<aaseq>MGLFPPMCSKNMEIPILKGSARISSRLHFVCPHLFPSSGFWPVE PINDVDSEKNKVSSLQACESVSAANLLKFHLRPYAQLGLDRSSIPSLTTYGDIVDELL SEIPEIKEVPEQISKFWQSNSVGKHMLMVEEPWITENSSVCNFVDENSNSGKLQDGTP LRASGWRKHPKDTPDIPCCVENATREDMEITFLGTGSSQPSKYRNVSSIYINLFTQGG ILLDCGEGTLGQLKRRFGVSGADDAVKSLKCIWISHIHADHHTGVARVLALRSKLLKG VPHKPLLVIGPRPLERFLNAYSTLEDLDMQFLDCRQTLKPSIEAFLSDNATESATSQL GSTIFAPGSKMENYSRKPASPRDTTALTNLKDVLHESGLEVLYSVPVLHCPQAFGVVL RAKEKVSSAGKAIPGWKVVYSGDTRPCPALVDASRDATVLIHEATFEDSMKDEAIARN HSTTKEAIAVGTSAGAYRIILTHFSQRYPKIPVFDEVDMQKTCIAFDLMSVNLADLPV LPKVLPHLKLLFKDEMVVDESDEIQEAVM</aaseq>

Gene Sequence

<dnaseqindica>4207..4371#4455..4505#5099..5583#5665..6268#6658..6966#cccgtaatccatccgggagctccgtccctcgcttcggcatgaggcctccgcccttaaacccctgagaagagaggaggaggaagccatgccgcaactgccctcccctctccgccgcctcctcccgctctcccaaaccctagccgccgccaccccggccccgctcctccacctctcccgccgcctcttctcctcctcctcctccccctccccctccccctcccctcgcgccgcgtgcctccgcgccctcgcctaccgcggcggccaggcaggaggaggaggtcgccgcggccaccacaacaacctcctccgacgcgggaacagcacgctcgggaagaggagcaaggagaagatgggcggcggaggagggggagggggagggggaggggaggcggaggtggcgttcaacaagacgcgcgcggaggggaaggacgggaggaagggcaggagcatggagctcaagagccgcaagctcaaccccatcaacaccatctgctacgtacaggtgagggattttgccgatttctccccccacaccacgccacattcccgatggtctcgttattaagccgctctgctttgcgcctagctttcagttcagctcgattaaagcggggattgcctgctttttttatgctacatacattttgtttcctaagacgcgaacgatgtcgagcaacaaaatgataatatgattatatatatatgccttttagcacaaggttagtacctgctacaatcctttgatggcgattgtgcatgttggtttacttcatgacttagcaagcacatttaattcctgggcttacttgggatacaaaacatgccccattggagtatggcgcgatatcttttgccttgggtttcagcatgccggttataattttctttgctttgtaagaatgtgcatgtgtcgcctttctgctgacctaactgtgggcataggctaaaatgttatcccaaattgattgcgatagatgtcttacttaggtttaaagggggtatagcatctgaaccaaactttaaaccatcgttcgcttattacctgcgtgctaagaaaattataaaataataaattttgtcacgatgccaaagttcatcggaggatatacatattaatgccacccgctaccaaattggtagaaatgattcagaacatcaatgctctgatgataacgatgttgataatcacttgtagggtgtatattctgggtttcctttacctgttgaagaccaaaaatactatgttgtcagggtcttgtggatgctgcagttgctggctggcaaagcaagcgatcaaatcgagctagtttagtaagagtgagaaaactaggtataagcacccctagaggcctagaatgcaatcattccagctgtttttgactttttgtgtcacccccctcagagatagttgttcagttaatcaaccccctcacttagatcaactcatgggaacagggacaaatgcctttgccagtgatcttaccccttcgttcttggcttcttgctgtgcagatacttggtacaggaatggacacacaagatacttcaccttccattttactcttctttgacaaacagaggtttatatttaatgctggcgaggtatctgcagcacttgtatttatttgatcactctctctctctctaaaacatacttatgtttttaattaatgtgcttcttaagtgcacaagttgttcctaaactctagttgccttaggggcaaatttgtagctcaggtctattgagttccgtttgtcctgcttttttgtgtgtattgctctgtattttatttatctaattttatcatccttaaccagtttgtcatgtcttattttggtgaacttaatgtgctaaataacaaccttgctgtctgatagggtcttcaacgtttctgtactgaacacaagataaagttatcaaaggtatgaggtccttctcgccaatgcattgatcatatttcttttatccttgtttgattgtgtttgtaaaccagcaacttgcttaaatgttgattctccacctcccagattgaccacatatttttgactcgtgtatgctcagaaactgcagggggccttccaggtaaatttgatcactctatgtactgaactactgtcattatttgctgaactgtgattatatctatgacataattgtttctgttccttcttttcatttttgcaggactggttctgactctggcaggcataggagaagagggcatgtcggtgagatcacatgatttcatcattcccttcttttcagtacctaattgccaactcatcctgttataccttttctgcatactgattgtattgttcccttttatctgcaacataggtgaatatatggggcccttctgacctagattttttagctagtgcaatgagatcctttatcccaaatagagcaatgcttcacacacatagctttggtgtggaacaaaatgtatcttcttcccaatctaaagatgctactgtcattgttgatgacgaagtagttcgaatatccgcaatgtttgtcaaaccaagatacaataaagaagccagttgcttgaatgactccaacttgaagcctggcaatactgctatcatttatgcatgtgaactgccagaacttaaaggaaagtttgaccctgctaaggctgctgcccttggtctcaagcctggaccaaaatatcgtgaacttcagctcgggaactctgtgcagtctgatgcattcgataaaatggttagtactgaatactgagatatttaaactgtaatctatttgtaggattataaataatattctttcatgtatttgtttacaatgttttttttcattgattcaagcttgagcctatgccaccaggtagatcagtgctgcccgttgggaacctaactttttcttttggaggctgttgagtccgctgttcagtgattcatctgtggatggggtggcactatatattttcatgaatagattgctgatgtaatattttattagtctttaaagatgttaaatactaaattaaattttattagtctttaaagttgttaaatactaaattaagcagtgccgcttgactatcttctgtcctttccttgataacataatttaatttttttttctgtaatttaagcttttgatattacttcagatataaattgcacgcacaagataactggatgaaaatttcttgtgtacagctcatttagtttgccaatttctaggttcatccaagtgatgttcttggcccgtcgattcctggacctactgtacttttggtggattgccctacaaaatatcatatgcacgaactattttccctgcaatctcttatacgcttttatgaagattcttctgagcaagcagggagtcccaagaaagtaaattgtgtaatccacttgggcccatcttctgtgactgaagctctcgattatcagaactggatgagaaaatttggtgccacacagcatatcatggcagggcatgaaatgtaagattcagttctgttcactgttttatgtatgcttttcatgcagccccaattattggcttttctagtttgaacttaggttaaaactattgttgttagtaaatctgaagttagcttttttttacaaaagaagtgagaagttccatattgtagaaatgtttaacttggtggaatttatctgtaacttccaggaatgaatttatacgtcgtgattgcatattgtgaagttttactttgtcactgtattatcttcgtcagttcctaattgataattagtgaagttttgcttgattttgctacggaacattgtaacttgtaaggtacttcttgataatattccacctcggtaaaacaccattttattaattttattattgtataatatctgttttaggattttggaaccctcagttatcaccataggttaatttttcaacctaaatgcttaaatcattcacttaacattgtctaactttttaaatctggcttaaatccaatccatgtgatgatatttgtggtgtttttgccacgtgtgctcacttttatgctgttttagcgttctcatgtacagttgttgctaccaactgggcacatggattgctgacacatggatgagtgaacacaagtgtggtgcatctgcatatagtaggatctgcgcggcagaaaccactacaaatactgccatcttgtttgtaatgatccagttctaatatttggtcatgtgatgggactttttcctcctatgtgcagtaaaaacatggaaattcctatcctgaagggtagtgcaaggatatcatcacgtcttcattttgtatgccctcatctcttcccatcctctggattttggcctgtggaacctataaatgatgttgattcagagaagaataaggtagcttccagtaagatacataataccagataatataaaaatgcattctgcttatatacatgaaattttcttaccacttttaggtttcttcattgcaagcctgtgaaagtgtgtcagcggctaatcttctaaaggtatggctaactctataaccatactgtatttccctgttagcacttatcacacgagcgtttctgttaatctatctggtatttgtatgtctggactttgtgatgaaaatggtttcaaatatggatgtgaaaattcaactaatagtttatgtctcgaaacttaacgtgtcaacctaccacactataccaatctttttaaagcagcatgactaggattttcccttctatgcaatgcaattgtaaaataacctgctgtgacgaatgtcttggtcattatttattgatgatctttgcacagacagttactttttgccctacgttagttctggtcttgcttatattctctgagcatgggcttgaatatatgcaccttgcaattattttccacgccatgctatggcacacaattacaatctagaagctgagaaggagaaattcttctcatgaaagatactacataaaaatgaagctgacaggaggaaggagagataaataaatcataagaattttgcatcatctatgtgaccagttgctggttaaactttctttagttcagtgcaatgccgtttattacattagtgggttctccttttcagtttcatctgcgtccatatgctcaactggggctggacagatcgtctataccaagccttactacttatggagatattgtagatgagctcttgtcggagatcccagagattaaagaagttcctgaacagattagcaagttctggcaaagtaattcagttggcaagcatatgctcatggttgaagagccatggattactgagaattcctctgtttgtaattttgtagacgaaaatagtaattcaggtaagttacaagatggcactccattgagagcaagtggctggagaaagcacccaaaggacactcctgatatcccttgctgtgtggagaatgcaacaagagaagatatggaaattacctttttgggtacgggttcatcccaaccttcaaaatatcggaacgtaagttccatatatattaacctgtttacacaaggaggtatacttcttgattgcggtgaaggaaccttagggcaattgaaaagaaggttagttcttacatacttctttaggtaattgagaaatgcatgttatttcatatttgtcgtcatgacactttctctttataggtttggtgtaagtggtgctgatgatgctgtgaaaagtttgaagtgtatttggatttcccatattcatgctgatcaccacacaggtgtagctagagttcttgctttgaggtctaaattgttaaaaggggtacctcacaagcccttacttgttattggaccaagaccacttgaaagatttctaaatgcatattcaacactcgaagatcttgatatgcagttcctagactgcaggcagactttaaagcctagtatagaggcttttctcagtgacaatgctactgaatctgccacatctcaacttggaagcactatatttgctcctggaagtaaaatggagaactacagccggaagcctgcaagtccaagagatactacagctctaactaatttgaaagatgtcctacatgaatcaggtttggaagttctttacagtgtcccagttctgcactgtccacaggcgtttggagttgttctgagagccaaggagaaggtgagcagtgctggaaaagctattccaggatggaaggttgtttattcaggtgacacgaggccctgcccagctcttgtagatgcgtccagagatgccactgtactaatacatgaggtaagatgaacataaatcttttggacaactaattccattattaccaacttgatatccactgccatttccatggtggctatgattctatattcctcccttttgagtgcttgccatcactgcttatgctccaaggtggtttccaaaagttcaatatattatttgagttatcagttctgttttttctgtctgtcctagtgtcctgtagtaaaatatttcactctccaattgatgtggacgacaactggccaagtgcatcaccaactaaccttgcatgtttttgtatactgttagctgcagaatgttctcttctaattattgatgatattaatcactagttaatggcaataatggtattgcgtgtctaaactgtgcaatactcgtttctccaggcaacatttgaggacagtatgaaggatgaggcgatcgctaggaaccatagtacaacaaaggaggccatagcagtaggcacatcagccggagcataccgtataatcttgacccactttagccaaagataccctaaaatcccagtttttgatgaggttgatatgcaaaagacttgcattgcgttcgacctgatgagtgtgaatctggcggacttgccagtactgccaaaggttcttcctcacctgaagctcttgttcaaagatgagatggtggttgacgaatctgatgagatccaggaggctgttatgtagtactgatataagatagaatagtgtacaacaatttaaatagaatgatttttgacctgagaatccaattgtagacagcgccatccatgcgatatgttactagtgaggccaaccaccctgcattcagatactagaatagctgtactgtcaatttttggcgttgtcttgtgcaataagcattgtcggcaatttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0232300, RefSeq:Os01g0232300