Os01g0235800

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Revision as of 04:31, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0235800| Description = KH domain containing protein| Version = NM_001049060.1 GI:115435533 GeneID:4327782| Length = 4090 bp| Definition = ...")
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Gene Name

Os01g0235800

Description

KH domain containing protein

Version

NM_001049060.1 GI:115435533 GeneID:4327782

Length

4090 bp

Definition

Oryza sativa Japonica Group Os01g0235800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:7506563..7510652

Sequence Coding Region

7506620..7506703,7506821..7507240,7508071..7508322,7508676..7508933,7509778..7509857
,7509939..7510050,7510133..7510276

Expression

GEO Profiles:Os01g0235800

Genome Context

<gbrowseImage1> name=NC_008394:7506563..7510652 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:7506563..7510652 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtctactgacagctgttgtgaaattcgagtttcaaaggacaagcttccattatgtgctttaccccgagatgaactttgccagatcactggagagctcgactcagtcaggaaaggtctgaatacagttgctcagttgctatttactcatcctcctaaggagagtgatgttcttggtgctcataattctggttcatctcgttcattcttcaatcaaccagatgttcttcctccaggaatgcaacctaatctccatctcccttttcaagggccaaatgttgctcatcttcccaattttcctgaagctctaatgcatggccatggctcagtcccacctgaaccccttacttttaggttgttatgctcaagtgacaaggttggaggtataatagggaagggtggaaacaatatcaagtctattcagaatgatacaggctgtgaaataaaggttcttgatactgttccaaaatctgaagatcgcatcgtatttatctcaggacctgcgcatccgggtgatggaatttcccctgcacagaatgcaattctgcatgtgcagcgtaaaattgtaccgacctccaacaccaaggagggtcctgcgatatgtaggctgattgtttcaccgaaccaagttggttgccttcttggcaaaggtggtagtatcatagctgaaatgaggaagctatcaggagcacatattatagtgctgagcaaagacaagatcccaaagggtgtcccagaaaatgatgaagttgttcagattagtggggcctctgaagctattcaggaagctctaatgcagataactgcaagactgcggaaccatcttttccgggacagaatggcttcaacagtccctaatgtgcagccaccttttggtttggtggatcctcagtttggttcatatgcgggaaaccatgattctatatctcctaggatttttcctaatgtgcctcagtttcataaagattttataggacgaccattggatgagatgtctgctccttggaccatgaagggcatgcaggttgttggtgatccaatttcattgcctgatatcccaggaatggcgcatagaggaatgggtggatttcctgggcctggtcagccatctatcgtatcaaccataactgcagatgtcatggtcccaaaattagttttaccttctctatgtggggaagatggaggctgtttaaacagaattcgtgagttttcaggggctaagataactgtcgcagatccgatgggtaatgcaatggacactgctattttgatatccggcacaccagaccagatgcatgcagcccgaagtcttattcaagcatttgtcctaagtgaaccactagccccctga</cdnaseq>

Protein Sequence

<aaseq>MSTDSCCEIRVSKDKLPLCALPRDELCQITGELDSVRKGLNTVA QLLFTHPPKESDVLGAHNSGSSRSFFNQPDVLPPGMQPNLHLPFQGPNVAHLPNFPEA LMHGHGSVPPEPLTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDR IVFISGPAHPGDGISPAQNAILHVQRKIVPTSNTKEGPAICRLIVSPNQVGCLLGKGG SIIAEMRKLSGAHIIVLSKDKIPKGVPENDEVVQISGASEAIQEALMQITARLRNHLF RDRMASTVPNVQPPFGLVDPQFGSYAGNHDSISPRIFPNVPQFHKDFIGRPLDEMSAP WTMKGMQVVGDPISLPDIPGMAHRGMGGFPGPGQPSIVSTITADVMVPKLVLPSLCGE DGGCLNRIREFSGAKITVADPMGNAMDTAILISGTPDQMHAARSLIQAFVLSEPLAP</aaseq>

Gene Sequence

<dnaseqindica>58..141#259..678#1509..1760#2114..2371#3216..3295#3377..3488#3571..3714#gtgctagacagccaagtaggttggcttttgggaaagaatggtagtgtgattaagcaaatgtctactgacagctgttgtgaaattcgagtttcaaaggacaagcttccattatgtgctttaccccgagatgaactttgccaggtaatttttcagaattggatttcattatcttgttctctactggtccttttgtaatatatctgttagattttgcatcagaaaatcattacatactcccttcatatatcatttcttcagatcactggagagctcgactcagtcaggaaaggtctgaatacagttgctcagttgctatttactcatcctcctaaggagagtgatgttcttggtgctcataattctggttcatctcgttcattcttcaatcaaccagatgttcttcctccaggaatgcaacctaatctccatctcccttttcaagggccaaatgttgctcatcttcccaattttcctgaagctctaatgcatggccatggctcagtcccacctgaaccccttacttttaggttgttatgctcaagtgacaaggttggaggtataatagggaagggtggaaacaatatcaagtctattcagaatgatacaggctgtgaaataaaggttcttgatactgttccaaaatctgaagatcgcatcgtatttatctcaggacctgcggtaaccagcttctttccctcttgataatattcgtttgatcaatatcagtttagtccatttgtaacctgctttgtagtagctagtagcccattagtcctagaaatatattcaggatccatctgtctgagaaacatggcattcagtagaactatagggcgtatatctttttcatactgcatctctagcatttgaatatctagattctctgaaaaatattagtattgtatttacataattttttattctcccattagttctgcatttgtaccactgtatagaaatggagaaatattagtgtaacatagttgcgaggcagcttgccataaatctcaacaaaatatatccaacagatgcatatttctgcatactgcactgtttctagtgttttgaatatttcaatgctctaaaaaattactcacatactttttgatattccgtctttaattatgcattggctaccattgcatagaaactgcaaaacattagtgcaatgtagttgccgggcagcctgctgttaatcttgaaaaactcaatattaaaactccaatagaactcttgtttttatgtgcaccgagacaggagaggggcatgcatagtgtgctagaaagttggatgtaacaaaaatttaattacatctcctgtgttctgcactaattttctctgcttcgcagcttttgttcttaattttgacacctgaggcagttgttagaaatttgtaatttgcaatggacttagctctgagcaatcttattattactgtctagtgtgttctcaagatagatagccactgatgactaatgtattcaaattcatttgtctctattctgtagcatccgggtgatggaatttcccctgcacagaatgcaattctgcatgtgcagcgtaaaattgtaccgacctccaacaccaaggagggtcctgcgatatgtaggctgattgtttcaccgaaccaagttggttgccttcttggcaaaggtggtagtatcatagctgaaatgaggaagctatcaggagcacatattatagtgctgagcaaagacaagatcccaaagggtgtcccagaaaatgatgaagttgttcaggtctgttttatattgttgtcttgcagaacctacactatttggggttgagcatgtagctcagtggtacagcacctgtagagatgccacacacccagggctcgaatcctggttaccgcatttgtgccctgcataaggttttggtgggccccttctttaaagcaaagtcaggggggacgtccttcccccttgatgggagttcttttagatcttatatgttcagattctactttgttattatgtatcttgacttgcctgtgctcctttttttttctatgttttttttccttgtatgagtatatgatacttctttttttcttttggataattgatttgcaaaattggtattctttcagattagtggggcctctgaagctattcaggaagctctaatgcagataactgcaagactgcggaaccatcttttccgggacagaatggcttcaacagtccctaatgtgcagccaccttttggtttggtggatcctcagtttggttcatatgcgggaaaccatgattctatatctcctaggatttttcctaatgtgcctcagtttcataaagattttataggacgaccattggatgagatgtctgctccttggaccatgaaggtatcaatctatgtatttttttttcactttaagatgtcatggaccatgcatgagaatgcgagttgcttgaatcttttttctccattctccctttgttgagatgcttgcaatgctctcaaagaccagcacaatttcctgttttatgtatatttggcaccagatgtgttcctaccttgttacaaagttctggtggtattgccttcagcctggagttcctttgttgtgtttgcaatattaagctgaagtccctatgagtgtctcttaggatacaaattgaaatggtactatctctgttttttagatgacgccgttgacttttgacatgttgtttgaccatttgttatataaaaaaaaatagtgcgatcatgcaaaaatataagtcatgcttaaagttccttaacggtaaaataggtcacagcaaaataaacgatatttacaaaaatgttttgaatacgacgaatggtcaaacgtcatgtcaaaagtcaaaggtgtcttctattaaaaaacggagggagtatgtgtttaccttgctttgtttgacaatttggctgggaaccaaatttggttacccatgagtgtgacattccacaagatctgttcttgccttcttggttttcggtgccatatgtgtcacccctttttctgagaataagtaatttaaagttggtgtcagaagtgttttatagtcaccactagagtaggaaaattgttgatggttgaagatatgtcatgatgcattggtattgtaacatggtaaacaagtatgattgggaagaaaatagcttgtatactactatatacaagttttatgattttccttaccattgtggtctttactttgtagggcatgcaggttgttggtgatccaatttcattgcctgatatcccaggaatggcgcatagaggaatgggtggatttcctgggtttgtttcttgtcttggcttgaatatgtttatctgttgatcaacagcaatgaaaacatcatgtttttgattgtattgcaggcctggtcagccatctatcgtatcaaccataactgcagatgtcatggtcccaaaattagttttaccttctctatgtggggaagatggaggctgtttaaacagaattcgtgaggtttgtattcggctagtgcattttgtagcatatccagtaaatggttggatgtatcatctgacataattaaggccatgtgcagttttcaggggctaagataactgtcgcagatccgatgggtaatgcaatggacactgctattttgatatccggcacaccagaccagatgcatgcagcccgaagtcttattcaagcatttgtcctaagtgaaccactagccccctgatatttcaaatacctgaaggtagtgaccatggactggttgagttgctggtgatgatgattgtgtgggcaatgaagctagtgaccttatgtgttcatatttatgaatatgcgtgccctgtttgcagacttgcatatggtcgaagaggctaattatgctgaatagtgactaaatttcaacatgatggatctttgctaggttctttggaaaatatcccagtcttttcattgtgagatagaaatgctatggttagctgcacagttctcttttcatgcaagctatatgcttggagcttgaaagcttcaaacttttttttgtatgatgagcccatcatgttgattttctaaacttatattaaggaaactagcctaattattgc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0235800, RefSeq:Os01g0235800