Os01g0252900

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Revision as of 04:32, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0252900| Description = Zinc finger, CCHC-type domain containing protein| Version = NM_001049142.1 GI:115435697 GeneID:4327113| Length = 325...")
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Gene Name

Os01g0252900

Description

Zinc finger, CCHC-type domain containing protein

Version

NM_001049142.1 GI:115435697 GeneID:4327113

Length

3254 bp

Definition

Oryza sativa Japonica Group Os01g0252900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:8357997..8361250

Sequence Coding Region

8358188..8358700,8359702..8360016

Expression

GEO Profiles:Os01g0252900

Genome Context

<gbrowseImage1> name=NC_008394:8357997..8361250 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:8357997..8361250 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcaagggaaccaagtcctgaaattgatgatgaactattcaatgaagtttatgggaaggcatacagtggtccagttgcaacaactactaacaatgtgacgcctagagtgaatgatgagaagaggcccctcgaacgtgaaaagtcagatgaggaagatggccccccagatcccaatgctgtccctactgacttcactagcagagaagccaaagtctgggaggctaaagctaaagctacagaaaggaactggaagaagagaaaggaggaagaaatgatttgtaaaatatgtggagaatcaggtcattttactcagggttgtccatccacgctgggagcaaataggagaaatgcagatttttttgaaagagttccagcaagagataaacaagtcagggatctattcactgagaggacaataagtcagattgagaaggatgtggggtgtaaaataaaaatggatgagaagttcctgtttgtcagtggtaaagataggttaatactagcgaaaggtgtcgatgctgttcataaaatcattcaggagggtaaaggtaaaaatacttcaagcagtccaaaacgggatcgtttgagatcccctgtgcgaactaccagtgatattcgcccaaggcacactgattctagatggtcacatagtccaagaagtgctccgcgctctcaaagtaaaggatattataacgaaaggcctctagatggccgttcacatgatgatatgcctaagttttcgaaagaatctccacaaggtagggcgctcaagcacactcgtcttatcattgttgtatcggcaaatattaggagccaggcattttag</cdnaseq>

Protein Sequence

<aaseq>MAREPSPEIDDELFNEVYGKAYSGPVATTTNNVTPRVNDEKRPL EREKSDEEDGPPDPNAVPTDFTSREAKVWEAKAKATERNWKKRKEEEMICKICGESGH FTQGCPSTLGANRRNADFFERVPARDKQVRDLFTERTISQIEKDVGCKIKMDEKFLFV SGKDRLILAKGVDAVHKIIQEGKGKNTSSSPKRDRLRSPVRTTSDIRPRHTDSRWSHS PRSAPRSQSKGYYNERPLDGRSHDDMPKFSKESPQGRALKHTRLIIVVSANIRSQAF</aaseq>

Gene Sequence

<dnaseqindica>2551..3063#1235..1549#gaaccctcccctcccccctcccgcccgccgcgtacggcgccggcggccacggcgagggccctcgtcgtcggaggccccctaccactggcctggcggggctcacccgccgccccctcctcctctcccgaaggccgaagaggcgcgcctccatcatcagcaggtcagtttgggggtggtggtggtggtggtggtggtgggcgtcgtgtacctgcgtatctgtggacgcgtggggtggccgcacccggtgggaaccaatgccggcctagagccgtcggtcgcgcgcggcgcggatgcggctcttaggggtagagagggggtagggcgaggcggattggctcgatttgttcgcgcatctgttcttttgttttttttccctcgctcatagaaatagcggggatggatagtgttccgcgcccttctgagttggggggcactgcgtatatttgtccaaggttaaactgatagacgcgaggatttatgagatggctagggattgcttatgcggacgctggtagtggtagggttcggaatcgatttgctgctttttcgctctctgtgaaattttagaattttctacattagaaatgccatgaagcatgaaagaaaagaaaatctttagtcgtatatgccacttgtaattcagaactgtatatatatattattgaaatgcgcatgagttcaatatcatcgtgaaagagatattcattggctgcttttatgaacttcatgagaagcatgtttcagtttgtggcttttagggaaatgtaggtctggagccaatttttttgatcgaattgaacatgtcctgtatgatatcgactagtacgtgcatcctagtagcttatatgaactaagggagaaagcaattatgggcctgcttgggagcgattgctgtggcttttggggctgcagcggcacagcgcagccgcttggctgcatctccaaaaggccacagccattgcatcaatcagctgttgcgggagaagctggctagctgctgcagcacagcgacaggcagctgaaatgaacaagccctatggttcaaccaatgacaaaaaatgccctctaggaactatgtttacttttatgtgcaacagcttctatttatttacattgataagcaaacatcactgcagacttgaaatatttcttttgccttcactaaacaacttcttccttctatttcctcagcttttcatagcaaagactagcttgaatagattattatctgccaatggcaagggaaccaagtcctgaaattgatgatgaactattcaatgaagtttatgggaaggcatacagtggtccagttgcaacaactactaacaatgtgacgcctagagtgaatgatgagaagaggcccctcgaacgtgaaaagtcagatgaggaagatggccccccagatcccaatgctgtccctactgacttcactagcagagaagccaaagtctgggaggctaaagctaaagctacagaaaggaactggaagaagagaaaggaggaagaaatgatttgtaaaatatgtggagaatcaggtcattttactcaggtagtcttttctctgaataaattacaactggcatgcttgttgattgagatagacacataatgcattactagactttgtttatccacttgcagtattttcaactctgcagtaagtcagtaacgagttacactcaatattgatactgaatttaacagttagcatattcaaaatggagattgctctgtaaaaagattagtctgctgtagtgttgtatcaacctttattttttatcttgaatctaaaaagtatattataacaaaaataaattctgtgactactattatttgtcattttcttttcctttttcctttcatctttatttatcatttttcagacctttctcctttttcattactctcaatggtgaatttggacttaaaaactttaatacaaaagaaacatgttcagtagtacatccacaagttcattcattctcctatctttcataatttatatgctaatctgattgctcaaccaaacattcgtgcactggataccttaaattcattgagtctctttaaagcacctcagggagttgcctctatacatcttgacattgattacagtttagagacactgtagtgttttatgtgcattgtttgtgcatacttataggccctgtttctttcagcttgggattattataatccagattattgggagtaagctgagagaaacagacaacttattgaaataacttattataatctagagcccagcctattataatctgataagctcatttaggtgagctttttccagattattgggtgaaaaattacccaccataccaccccactccctctttagacttgcaaaccaaataatctaggctctaataatctaggaaagaaacaactaaccgcttattctactacagattataacaatctatcttatagtaatctgactcaataatctagattataataatcccaagctgaaagaaatagggcctcaaaatttgtatttcagcttacaattttttccctttggaacagggttgtccatccacgctgggagcaaataggagaaatgcagatttttttgaaagagttccagcaagagataaacaagtcagggatctattcactgagaggacaataagtcagattgagaaggatgtggggtgtaaaataaaaatggatgagaagttcctgtttgtcagtggtaaagataggttaatactagcgaaaggtgtcgatgctgttcataaaatcattcaggagggtaaaggtaaaaatacttcaagcagtccaaaacgggatcgtttgagatcccctgtgcgaactaccagtgatattcgcccaaggcacactgattctagatggtcacatagtccaagaagtgctccgcgctctcaaagtaaaggatattataacgaaaggcctctagatggccgttcacatgatgatatgcctaagttttcgaaagaatctccacaaggtagggcgctcaagcacactcgtcttatcattgttgtatcggcaaatattaggagccaggcattttagacgatttgagataaagaaaatgcctctgatccctttttgttggttaccaccatctatggtaatttgtttggttccttttgcagctagaggtaagttcaagatttatgtgctcaaatgactcaatgtatgtctggttatgatcagacaaatttacttgaatacaacaagttccatatcgaaaggttttccag</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0252900, RefSeq:Os01g0252900