Os01g0257400

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Revision as of 04:33, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0257400| Description = Zinc finger, CCCH-type domain containing protein| Version = NM_001049167.2 GI:297596470 GeneID:4326230| Length = 565...")
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Gene Name

Os01g0257400

Description

Zinc finger, CCCH-type domain containing protein

Version

NM_001049167.2 GI:297596470 GeneID:4326230

Length

5657 bp

Definition

Oryza sativa Japonica Group Os01g0257400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:8592772..8598428

Sequence Coding Region

8593394..8593756,8595591..8595911,8596486..8596764,8596845..8596958,8597132..8597200
,8597730..8597911,8598060..8598132

Expression

GEO Profiles:Os01g0257400

Genome Context

<gbrowseImage1> name=NC_008394:8592772..8598428 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:8592772..8598428 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagccgtacgcggcggcggaggggggaggaggaggaggaggtggaggcagcaccgacaccgggctcgaagagtcgatgtggaggatggggctgggcggcggcgggggtggcggaggggaggcggtggcggcagggaggctgccggagcggccgggggaggcggactgcgtctactacctccgcacgggggcttgcggctacggggagaactgccgctacaaccacccgcgcgatcgcgccgccgcagcagtgttaaatggaggtgggaagaccacacattcggcagagtatccagaacggccggggcaaccagtttgtgagtactatatgaagaatggaacttgtaagtttggctctaattgcaagtatgatcacccaagggaaggctctgtgcaagcagtcatgttaaattccagtggataccctctacgctcaggtgagaaagattgtacctactatgtcaaaactggccattgcaaatttggatctacatgtaaattccatcacccagaaattggtggagtttcagagacacctaacatgtatccaccagttcagcctcagcctatctcttcctctcatccatatcaacatcttgctggctggcaaatggggaggcctcctgttttgccaggatcatttttatcaggctcatatccaccaatgatgcttccgtccacagtcgtaccaatgcagggatggaacccttacatttcacctgtgaaccaagttgcgtcagctggggggcatcaaactgttcaagcagggccgttttatggcttatcgcaccaagggccttctgctgcagtcacttatggcagtcagtatgcaccgttatcttcttcaaccatgccttcaagtagcagtaaacaagaacctgcctttcctgcgcgacctgggcaacctgaatgccagtattatctgaagacagggagttgtaaatttggatctgcatgcaaatatcatcatcctcagtatttgaatacacctaagtctaactgtatgctgagtcctcttggtcttcctcttcggccgggtagccaaccatgtgcttactatacacagcatggattttgcaaatttggtccgacttgcaagtttgatcacccaatgggtactctaagctatagcccttcagcgtcatcgattactgatttgcctattgctccctatcccctcaattacgctgttgctcctgtggctccaccttcatcttcttctgatttgcggccagaataccttctaaccaaagagttttcagccaaccagtcagcgtcacctggtactacatgcggacctgctggagcaatgttaaaagcgtacgctccacacatgcttatccgacctcaaacttctggagctggtggcatggttacaactcatggtggagagctctaa</cdnaseq>

Protein Sequence

<aaseq>MEPYAAAEGGGGGGGGGSTDTGLEESMWRMGLGGGGGGGGEAVA AGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPERP GQPVCEYYMKNGTCKFGSNCKYDHPREGSVQAVMLNSSGYPLRSGEKDCTYYVKTGHC KFGSTCKFHHPEIGGVSETPNMYPPVQPQPISSSHPYQHLAGWQMGRPPVLPGSFLSG SYPPMMLPSTVVPMQGWNPYISPVNQVASAGGHQTVQAGPFYGLSHQGPSAAVTYGSQ YAPLSSSTMPSSSSKQEPAFPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSN CMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHPMGTLSYSPSASSITDLPIAPY PLNYAVAPVAPPSSSSDLRPEYLLTKEFSANQSASPGTTCGPAGAMLKAYAPHMLIRP QTSGAGGMVTTHGGEL</aaseq>

Gene Sequence

<dnaseqindica>4673..5035#2518..2838#1665..1943#1471..1584#1229..1297#518..699#297..369#cgctttcctttcctttcctttcccttctctgccactttccccttggcgcctactccaccaccgtttctccgcctccttgtcccactcacgcggagaggagaggagaaagccacgcgactcgaggcgaccgtacggcggccgcgacgaggaggaggaggagcaagccacgccgagattttggtggggagggaagaggaggcgggcctccaatttcgcctccgattctgtctccgatcgccggtcgcgggaggagcggcggcggggggagggcggagaggtttggggtggtggtggtgatggagccgtacgcggcggcggaggggggaggaggaggaggaggtggaggcagcaccgacaccgggctcgaaggtacggaagcggaattcccgaccaaaccccgtgcccttgcggttttggttggggtttgggtttgggggggtgctagggttttggatcttcgtgtgctcgagctcgaatgtgtgcggcgttgtgaggtttttgtgcttgtttgctgcagagtcgatgtggaggatggggctgggcggcggcgggggtggcggaggggaggcggtggcggcagggaggctgccggagcggccgggggaggcggactgcgtctactacctccgcacgggggcttgcggctacggggagaactgccgctacaaccacccgcgcgatcgcgccgccgcagcagtggtgagcaccaattccccctctcgctgctctactcctctttttttttttttcacctcctgactttagctacggtgacaatgaccgccctattggattacgtccggttgattttgaggtggggggcttcaagctgaaacctctcgccgagaattaattctacttatggcctgtgggatcttatcttgtgagcatagaagtgaaagttgattgcgcctttgctggtagcgatggtttgcttgattagtttggtgtctcggtcttatggttgatgtggacaattctgagctccacatgcaggcctagccacttgtctggtcctttttttttctgttggcaaacgcttccccttttcttttttaatctatgttttgcttatggatcaagtagatggaccatgtgctttgaactggtggtaaagattagagccttaggtagagtgtaatgattgtgaattcatgacaatggattgaaatcgaggtattttatcctgcttttgatttaaacattcatattgttatttgtttattagttaaatggaggtgggaagaccacacattcggcagagtatccagaacggccggggcaaccagtttgtgaggtaatttatctgattctcattttgtgcaagctctcactcatatgatcatatcaaacccaaaaaaatgtgcctatagaagtgggcaacctatttaggctacagatgatttttttttttgtgtgtgtcatgtgctggatactcttcgggttaacattttgtgataaaaaatgcagtactatatgaagaatggaacttgtaagtttggctctaattgcaagtatgatcacccaagggaaggctctgtgcaagcagtcatgttaaattccagtggataccctctacgctcagtgagataattcattcgatcaattcttattaaagtagtggcctgcctttttcattttctgatgaaatttcttatgtgcagggtgagaaagattgtacctactatgtcaaaactggccattgcaaatttggatctacatgtaaattccatcacccagaaattggtggagtttcagagacacctaacatgtatccaccagttcagcctcagcctatctcttcctctcatccatatcaacatcttgctggctggcaaatggggaggcctcctgttttgccaggatcatttttatcaggctcatatccaccaatgatgcttccgtccacagtcgtaccaatgcagggatggaacccttacattgtaagtttgtcatcattttcttctttgtaccacatgtagtggatcatcgagcaagggtgttattattatctctactactttaaaagcacaatcgtttacctttccttccctatcccaccctccacataaaaaaaacgtaccattccctataaaaccgcttccatccccacctataaaaaaacgttgtagaaaaggaccgagaaaaaacagggccacctatgttacgatcaaactaaaccatgtttcttagatcccattgcgacacagggggcatatgactagtaaattattaaatagatcttctaatctagtacaaactatctagaaagaaatttattttttcttattaaggatgtactttgaacatttatagtcatcacaataaaataagagaattggctggtaagagaattggctacagagtgacccagaaaatttaacgtgattcatactttgttgtaagaacaattcaggatgacttcttaattttgtgctacaaataatgctgatgtaagtgtcagaaaaagaaaaaaaaaagctgtattgacctctttactatgttttatgttcttagtcacctgtgaaccaagttgcgtcagctggggggcatcaaactgttcaagcagggccgttttatggcttatcgcaccaagggccttctgctgcagtcacttatggcagtcagtatgcaccgttatcttcttcaaccatgccttcaagtagcagtaaacaagaacctgcctttcctgcgcgacctgggcaacctgaatgccagtattatctgaagacagggagttgtaaatttggatctgcatgcaaatatcatcatcctcagtatttgaatacacctaagtctaactgtatgctgagtcctcttggtcttcctcttcggccggtgagtagctccaacacatatctgcttttatatgcttaaactatgtgtagcacgctgttgccaggatagtcagtccaaatgtatatcgcttgagtctggattagtatttgatatgttgtcccagataagtttgccatatagtttattgtattgagagaaccaaattgacgggtgagttttggtgtacacatgtaggctgtggttgttccagccggttcccaacaggaacagtacgcacggaaaacagaccggtccattagcgcgtgattaattaagtaaaatggatcaatatgattttttaagcaactttcgtatagaaactttttgcaaaaaacacaccgtttagcagtttgaagagcgtgtgtgcggaaaacaagaggggagagttgggaaaatagagtgccgaacacacccgtagtttagtctagttgcctattcatggaagcctagaaactttggagattcttatgccaaaactacaactgttgcatctagtaaagttctgccatagaagaacctacgttgttgtatgtttccttttttttggctgaaacagtgatgaagccaagccaccttcacatttttaaaaaactgttcatttactgcattagcttttatttactgatcctgtgtgacttacttggctctgcttgaaattcaatgtcaactgtaaattgcatttgagttgaatgttttacagtttccccgcatcgacacataaataattaataatgttaggtggcaggaactcctgaacagtaccaaatgcaaatgtgatccattgcgttcttttaaatcattccgggttgcaatttaaagtatactgttaaaaagtagtgatatattagttgttaatggaatatataattctctcatgtttttgtatttaacgatgtttaaatggcattatctttgttgggcaacgcccttttgttccttttgatgtttattggagtcaatgttttgaaaagtggtgtgcggtttcgtgctgtcaacccactttgtagcgcttatgcagcataatcggatgcttatgcggcttaagcggtgcaaggttggggcaccggttccatgaagtcggccttgtacgtggctttgtagaccttttttaaaaaacattatttggagtcaatctcctaatatgtgttctgttctcttgtttcttttcaaaatgaaatacccttgattactcacagtttaatattttgtaccaatttatgagtgcttgcttgtttgcttgcacatttatgtcctctactgcaggctgaaaaatggtagtagctagtatgagacaaatggtagaacttgaaaaatgtaggattttctgttatgtggtactctacatatttgcctttatgtatctattattgctaaggaaataaactttttatagaacacagaagataaaattcttttctgcatggcatcacagtctcagagaagggcagaagactggaagttattaataatctgaccaacagttgatgcccccctttgttgtgacagcatattgtgctgtcagtagctagtaaatttcatttagttctatgttcaaccttgcaatggttgcagtggtatctttcttttttcctttttttttttgcgatttgcgatatattttcctggaactacctgtagcattttgttgtctctttaagcgatgacagtcgaaatagaatctagtgtgactgagttccttctgataaaaatatggacattaataccatgtcttacgaacacaagctattcttgtatatggatgatacattacacttctatttgtttctgtttgcacttgttcaattattcatatgaagttttccttgatttgcagggtagccaaccatgtgcttactatacacagcatggattttgcaaatttggtccgacttgcaagtttgatcacccaatgggtactctaagctatagcccttcagcgtcatcgattactgatttgcctattgctccctatcccctcaattacgctgttgctcctgtggctccaccttcatcttcttctgatttgcggccagaataccttctaaccaaagagttttcagccaaccagtcagcgtcacctggtactacatgcggacctgctggagcaatgttaaaagcgtacgctccacacatgcttatccgacctcaaacttctggagctggtggcatggttacaactcatggtggagagctctaaccaccttcagcaagcttctcgggacttttttggcatatggtgaatgagatctcgtctcctttttttgcgtcagttcgacttaccctctcagcatcagttcacttggacccccactcattgtgaataaggcttcaactgactttgacaaaggcatggccaaggtggtaatcttgccacctgaataaattcatcatagatagataggcagtggcaagctcattcacttgccgtttatctcttcatgtctgaaatggaacaggggtcattctgaagtccagttaactgtttgactgtcattgcactatgattcagagcttcgaatccatctcctcggtacataattttatcggcggagcaggccgttgagtgtgcaccactgcagagagtttcatgtcagaaagttatttggtttggtcgctcttgcccaaatctctgtttatttttaatcatcatatatatatgcaatctcgagttcagctatatgcatattcatatatatactgggatcaagaaactgtaatcacacacttggaaaccctcatctgaatcgccccaagctaacttgctgcatcatcattttgctcatttagtcgattgcatccgacttatgtttgaaccctgc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0257400, RefSeq:Os01g0257400