Os01g0258700

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Revision as of 04:33, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0258700| Description = Zinc finger, CCCH-type domain containing protein| Version = NM_001049172.1 GI:115435757 GeneID:4326236| Length = 538...")
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Gene Name

Os01g0258700

Description

Zinc finger, CCCH-type domain containing protein

Version

NM_001049172.1 GI:115435757 GeneID:4326236

Length

5384 bp

Definition

Oryza sativa Japonica Group Os01g0258700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:8658393..8663776

Sequence Coding Region

8659071..8659439,8660710..8661030,8661396..8661674,8661761..8661877,8662122..8662190
,8663184..8663377,8663532..8663613

Expression

GEO Profiles:Os01g0258700

Genome Context

<gbrowseImage1> name=NC_008394:8658393..8663776 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:8658393..8663776 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagcagccgcacgccgccgccgccgcagctggtggaggggagggggagggcggggctagccccgacaccggcctggaagggccgatgtggaggatggggctgggaggaggaggcgggggaggtggaggtggaggaggaggggatggggacgcggcggggaggctgccggagcggcccggggaggaggactgtgtctactacctccgcaccggcgcgtgcggcttcggtgaccgctgccgctacaaccacccgcgcgatcgcggcggcactgagtttggtggaggtgcaaggaatgcagcagcattggattatccagaaagggcgggtcaacctatatgcgagtattacatgaagactgggacttgcaaatttggtaccaattgcaaatatcaccatcctaagcaagatggagctgtgctacctgttatgttaaacaacagtggattccctatacgcctgggtgagaaggagtgctcctactacatgaaaactgggcaatgtaaatttggaactacatgtaaattccatcatccggaattcggtggtgttccgatgacccctggaatatacccaccattacagtctccatctatagcttcccctcatccatatgcttctcttgcaaattggcaaatggggagaccacctgtagttcctggatcatatataccaggctcatacaccccaatgatgctctcatctggaatgatcccattgcaaggatggagcccttatccggcttcggtaaaccctgtagtgtcaggtggagctcaacaaaatgttcaagctggacctgtgtacggcatggggcaccatggatcttcctctacaattgcttatggtggtccttacgttccatatgcttcctcaactggacaatcaagcaacaatcaacaagaacatggattccctgagcggccagggcagcctgattgtcaatattatatgagaacaggagattgcaaatttggagctacatgtaaatatcatcacccccgagagttgagtgcacctaaatcaggctatatggtcaactccctttgtcttccacttcgtccgggggctcagccttgtgcatactatgcccaaaatgggtattgcagatatggagttgcatgcaagtatgatcacccaatgggcacgcttggctacagtccgtctgctttgcccctctctgatatgccaattgccccatatcctattggcttctctattgccacattggctccgtcttcgccttccccggatttaaggccagaatacatttcgaccaaagaccaatctgtcaaccaagtaacatcgccagtggcagcatccgagcctgttggatcaatattgccgaaaggggttttcccagcagacaccatgatgcgtgctcagactaacacaacatctggtggtagctcgagtcctggcggtggtcgctga</cdnaseq>

Protein Sequence

<aaseq>MEQPHAAAAAAGGGEGEGGASPDTGLEGPMWRMGLGGGGGGGGG GGGGDGDAAGRLPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAA LDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECS YYMKTGQCKFGTTCKFHHPEFGGVPMTPGIYPPLQSPSIASPHPYASLANWQMGRPPV VPGSYIPGSYTPMMLSSGMIPLQGWSPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSS STIAYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPR ELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYSPSALPL SDMPIAPYPIGFSIATLAPSSPSPDLRPEYISTKDQSVNQVTSPVAASEPVGSILPKG VFPADTMMRAQTNTTSGGSSSPGGGR</aaseq>

Gene Sequence

<dnaseqindica>4338..4706#2747..3067#2103..2381#1900..2016#1587..1655#400..593#164..245#agccacaccacaccagagtggtggtggaaggaaaggaaacgcgagaaagagagagagagagaggagagagaataagaggaaacaaaacctcacccccgatctcctcctcctcccactccgatcgctccccgccccgatcgccgccgctgacgccgacgaaggcatggagcagccgcacgccgccgccgccgcagctggtggaggggagggggagggcggggctagccccgacaccggcctggaaggtgcgtgcgtgcgtgctcgttgtgtgcttttttgtgtttggagctcgaggatgtagatctcggcgtccgtacgggggtggcgcgggatctgtgtggcgggggtggtggatgagcagctgcgttttggttttggttttgttggttgtggttgcagggccgatgtggaggatggggctgggaggaggaggcgggggaggtggaggtggaggaggaggggatggggacgcggcggggaggctgccggagcggcccggggaggaggactgtgtctactacctccgcaccggcgcgtgcggcttcggtgaccgctgccgctacaaccacccgcgcgatcgcggcggcactgaggtgagtctcctaattcgcgcttcccttcccgatctggttcgttgcggcttgcgcgcgcgcgcgtgcgtggatgaggcagctctagggtggatggattaaccatgtgatcagcttagtgcccaagtgaggatcgtgccatggggaacattgattcggccaatgtaaatgtagttcttctgtagcttgaaaattgggcatgccactgcctagatcttgtccggcgcatcggtagcactcatcgggtagcagcattagagtttgggttcgcggtggaggtgcacctctgcaagttaaagcacttggatatccctttgaaagcagaaagctgtaggttgcctgctttattggccgcttcatgtttacttattctgcttttttgggtgttttgtgtttgctaattttgcttaattggattgtattgtactgggtcagactacatgcatctgcagatggcaaacttctgtgctcaatctttctttaagtaagatcagttgttgattctgataacataataaaaaatatccttcttttcccattccgttgtcattaatttggttgattaaatcaaatgtgtcaacaaagacatctaggatcaatgattattgacatgaaaatctttcttgcctgttttcttaccgttggttagcaaagtcctttgtttagcatatttggcttttggctgatagtttaccctctatcctgattttgtgaatttctcacttgttgggtttgcaaaagatatagcaactattcagtagttcttgttataagtttacattcttctgttgcaactgtgatctttctaaatgatttatgaaactcatgtctattgatagcctatctactttccatgtttctgttttcgttaagaaattgattagtttgtctgtgcgcatgggatgccatatttgcctatgctagtctataggtagtaaagcttcgcttgattttggaacatcaaaattaagtagttgctattttttcaaaatgtagtttggtggaggtgcaaggaatgcagcagcattggattatccagaaagggcgggtcaacctatatgcgaggtactcaaactaaacagcttggtgcttgaattcaattatcttttatgcaacgaaaaaggcacccgccatcacttaagcttgcattaacaccatgtgttctttgcttgctaactggcaggcaggcagggcatgcaacataatactcaaataataattggctgagattgttaagcacataacaattttaatgtcatgtcatatgacatgtaaatgttggtcctaattctttttccttgttttacagtattacatgaagactgggacttgcaaatttggtaccaattgcaaatatcaccatcctaagcaagatggagctgtgctacctgttatgttaaacaacagtggattccctatacgcctggtgtgaaatctctcgtaaaatattgcttattcatacacttgtttttcctgttttgaaaaagagatgttggtacaaataaaatgcagggtgagaaggagtgctcctactacatgaaaactgggcaatgtaaatttggaactacatgtaaattccatcatccggaattcggtggtgttccgatgacccctggaatatacccaccattacagtctccatctatagcttcccctcatccatatgcttctcttgcaaattggcaaatggggagaccacctgtagttcctggatcatatataccaggctcatacaccccaatgatgctctcatctggaatgatcccattgcaaggatggagcccttatccggtaattgatttgaattacatgttctattgtggaaaaataaacagcatacctataaatgcaaaactgataaacaaattggacatgacagccaacttatactatgaaatgcaaagtgaatcaacaaatgaggcacgacagcatacttgtgtcatgatttgtgaagcaggttctttgtaatctagactgaaagatgtagaatgtgcttattgtcttttaggcaagagctggaaggcactcactgatgtgctgcctgaataaccagccagtgtttaagtgttaagcaaacaatcagatgggacaaaataattgacacatgccatgatggagtcttctcattgtggttttaactcttctattttatacaggcttcggtaaaccctgtagtgtcaggtggagctcaacaaaatgttcaagctggacctgtgtacggcatggggcaccatggatcttcctctacaattgcttatggtggtccttacgttccatatgcttcctcaactggacaatcaagcaacaatcaacaagaacatggattccctgagcggccagggcagcctgattgtcaatattatatgagaacaggagattgcaaatttggagctacatgtaaatatcatcacccccgagagttgagtgcacctaaatcaggctatatggtcaactccctttgtcttccacttcgtccggtgagtaccctgaaacctctaatacgtaccgtagcatcaatgtccttgggagtggggttgaacttccatagtcctaatgtccatgttttttcttttttttttaaaaaaaaaggctgcacatatatttttgttttgaaaaacaggttgtaggaactagtcatatgattatgtccactactcgttgaagcctcctaacgataatgttctctatgtgcactttcactaggaattttattgaggttcatggatttatccttggcctgtgtgtttgagtatgtgttaaaaggaggcgcacttatgcatgtgctcatgtttctgtgtgtgtgcacatgtgcatctttcttgtaatcacaaaaagaagaagcagattattgggcaattaggcattgtaagctttcttatgctgagtatttagggattatgagatcatggaacatagttgattacttaataattttggttagctgataaatattaactgtgttatattgtcatctactagtatataacttttatgggccaaagattggttgaaacttgaatgtatcaagtaagatacattgttcaaacttagctcctgagttttgaagctatttgcagcttaaattgttattggatgaagcattcataatgtttttttttgacttaataagcatttataatatttcagagggaaaacttactcaataacactgagcatgtataaattgaaaataacattgaatgtgaggatgagccatgtttggcccacacgtcagtgtaactcagcaagttatagaaacaggggctcccaaatattcccataaatcagagatcactatctgagtgaagcgcaaacttcaacagatacatggactttaaatagcctaatacgcataatttcaaatgctagtgtctgatttaacttgctttgtagggaaatatgtcctatattgttaaaaatatccattggtgatattactttcttttctataattagtttggaggtcttgtaagatccccttctttagttgcaaactcatactaattgtttttcagtgtgatatcctgaattagtttgcactgcccaaaaggtttacacagttcttaaaatttatgctaggagacagcacattcgtgcattaatcatctatagtgtcaggcttgcatagtatgtttggaagaagttgattggtgattgcacatagacctatgtttttgtctttgcttttttgtagagaaaatgctccttggtttcttgctaagctgcttgtgttatctcaacttgcagggggctcagccttgtgcatactatgcccaaaatgggtattgcagatatggagttgcatgcaagtatgatcacccaatgggcacgcttggctacagtccgtctgctttgcccctctctgatatgccaattgccccatatcctattggcttctctattgccacattggctccgtcttcgccttccccggatttaaggccagaatacatttcgaccaaagaccaatctgtcaaccaagtaacatcgccagtggcagcatccgagcctgttggatcaatattgccgaaaggggttttcccagcagacaccatgatgcgtgctcagactaacacaacatctggtggtagctcgagtcctggcggtggtcgctgatttttctgagctgagagatctcagcacaatttttcaatcacttgacacaggttggtttgaattctccttgatttcccccttattatactatatgtggcgccgctaaagtgctaatgcaatctattctgcacatttccacatcagttatgataggcccctccaatgtgaataaaaagctgtggcctctgtagagaaggctcggcgagggtggtgtttctctgccatctcaataaagcattcataggttacaggcaagctcgattcacttgcaatttttgcgttcttctgttctctgaaacgggaaagaaaaggaaggtttttgaatgtcaggctcgatagttctcatcggcagttcgcggcactgggagactcggatccattccctcggtaaataattctcaggcaaggaggtttatacatgcagaagctactggattttgctcgtccagcttccggagttcgtctttttcccttttttttttggttctgtatattgtcatatattatatatctatatattcaacggacatgagactcgaaactacataagtacatatgtgtctatactgggagcaaggcacattgtaacggacaagagatgcttatttaatgaaagtcttgctggaatactgaaatggtagtatagatgaagtcattttcatgcttctgttatccttc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0258700, RefSeq:Os01g0258700