Os01g0259400

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Revision as of 04:33, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0259400| Description = Protein kinase-like domain containing protein| Version = NM_001049174.1 GI:115435761 GeneID:4326239| Length = 7800 b...")
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Gene Name

Os01g0259400

Description

Protein kinase-like domain containing protein

Version

NM_001049174.1 GI:115435761 GeneID:4326239

Length

7800 bp

Definition

Oryza sativa Japonica Group Os01g0259400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:8690809..8698608

Sequence Coding Region

8691292..8692410,8692620..8693489,8694502..8696085,8696179..8696238,8696316..8696394
,8696474..8696535,8697109..8697184,8697347..8697399,8698161..8698250
,8698391..8698438

Expression

GEO Profiles:Os01g0259400

Genome Context

<gbrowseImage1> name=NC_008394:8690809..8698608 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:8690809..8698608 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaacaacttccacgtctacgaggccatcggccgcggcaagcactcgacggtgtacaaggggcggaagaagaagagcatcgagtacttcgccgtcaagagcgtcgacaagtcgcagcggtccaaggtcctcaatgaggtccgaatgcttcattccttagatcatccgaatgttctgaaattttactcatggtacgaaacctcagctcatttttggttaatactggagtactgcgttggtggagacctaaagggcttgcttgagcaggataagaagctgcctgaaaattctatacatgacttggcttatgatcttgtgaaagctcttcagttcttgcattcacaaggaattatatattgtgatctgaaaccatcaaatgttttacttgatgaatctgggtgcatgaagctgtgcgattttggattagcaaggcgtttgaaagacatagagaagaccaatcctggagatgtgccgcaacctttgaaggggactccatgttatatggctcctgagttgttccaagagggaggagtgcattcatatgcttcagatttctgggcacttggttgtgtattgtatgaatgctattcaggaaggcccccttttgtggctaatgaatttacccagctagtcaaatctataatttcagatcctacaccacctttgcctgataacccctcaagatcctttcaaaatctgatcaattgcttactcatgaaagatcctgctgaaagattacagtggtctgaactatgcgagcatcacttttggaggagcagaatgtcaattattcctttacctcctcagcctgcctttgacaacatggtcgacctttctgctacaccatatttagttgagagaaatggtgataaaccttctagacagtccacaccacccaagccccgtgatggcctacggaagaaggacgaaaattctgctaaggtgttcacccctgttaagaatatgctaagtggtaagaaaaacaatgcaaaaccttcctgtaaggctgatggattgaagggtgtaaatatcctcaggatgtctcgtgtagctaagaggaatttgcagagagaaaaagacaaggagaactacaggcgacaccctacagaagcttctgagaatgatacagaagttaagattgaaaacaatgatatggaacttgattttggtgaaaatccagaaggtgatgcacctgatgacaatgatggatcagacaatcctggatccgcagaagatgaaaaactttccactcaaggcactgatggtaatgaagagaactgcatgagtaatcagatggatatgctcacagatgaaggcccagttaaggctgaaaccatgataaaaactgaacataattgttcagaaaatcttgatgtggtggccactccaccaagtatttgtatgaggaaagcacaacgagcaaagacaacttcaggtgccgcagctggttccgagccatctgacatctctgcagcattctggcatccaacagatcttgctgttaaaccagttatgcctggtaggaaaggagataaagctgtagagacagtccctatgcttccgtttgaagctcttcctgctgttgattatattaagttgccacgggaacaaatgaatgcattcaatagtcagatacttcagagtttaagtggtacttttcaggtttcagagaaacagaatatcatcaaatacctggagatgttaagcatcaattctgatgctgcaaatataatcacaaatggtccaattatgctgttgcttataaaaatgctccgtctgtcaaaaacttcagtattgcgtgtccaaattgcttcacttatgggattgttgatacgctactccactatccttgatatagagctggcaagttcagggatttttaatgcactatcagatggtctaagggacaagcatgataaactcaggcgattctgtatggcaacactaggagaattactgttctacatttctactcaatctgatcaagataccaaagaaatcaatgcccaagaatcccctttgaaggataacagggccacagcttcttggcaggttccaagttctgtaattgcgctggtgtcatcaatcttgcgtaaaggtgaagatgatctagcccagctttatgctttacgaaccattgataacatctgtagccaagggacagattggacttcacgtttcgcttcccaagatgtaatcagtcacctgtgctacatctatagagcaactggtaagcaggagaatacaagacttattgcaggatcttgtttggcacgcttagctcgcttcagctcatcttgtattcatttaatactggagaggctggccttcaaggatatcgcatgcacactcattaaaggcaattcacgtgagcagcagatcagtttgaatcttctgaattcagcactagttaacagccaaatcataccaaccatgaaccgctacattcagtcgttaacagaagagaagcagttggttcctggactcatctctcttattgaacagggaactgatgttctgcgtggcaaaacccttctatttgttgctcttctttgcaagaacagtcgaagatggcttcctcatttcttttgcaatgcaaaactactatcagcagttgatagattgggaaaggagaaggaaggcttcattcatcaatgcacagaagcatttgtgcagttggttgcttcattggtcccaggcatccttgacactgtctctagtgatatacaacaggttatgggaggcaagcgtcatggagctgctactgctttaactggacgagctcatccaaagagcataattcatttgtttcctgttatccttcatcttcttgggagtgtttcattcaatcacagagttgtgacgagccatgtattgcttcagttggcaaatcttatgaaaattttggaagcaccatttcaggctcgggatgattttcaaatgacactattgagggttcttgaggcagccacggaggagccttctgttatacttaatgaacacaaaatattcacaagtcgaatccttccaagcttatccgtcttgtacaagggcaataaagatggtgatgccagattcctatgtttaaagatactgtccgatgtgatgattgtgatcttcagtgactcttcattgacgtctaatgagcaaacagtatctgacctggaaaagatctctcagaagtattttctccccatgtatccatcatttgcagaggatgaagatccaatacctatatatgcccagaaacttctggtaatgctgatggagcatgattatgttaaggtttctgatattctcaatgaagcaacagtatcccggtgctttgaatttttgctaggagatttgtctaatgcaaatgtaagtaatgtcaagctttgctttgcattggcatctgctcccgatatggacaccgacattctttctcagcttcaagttgtcagaagaatagggaacctgctggagtttgtgactgcaaaagatatggatgattttctagaaccaaccttggaactttgcagagcattcattatccggggcatcagcagtgacaaaattgtggccctttccaaagagcccgcactccttgttgatagtgccttcagcatgagcattgctgtcgatcaacaatcatgcgtcatggatatatgcgactttggtggcaacatgggcattttcctcgacctagttggaagttcagatccacatataagcgatttggcatcagactgcttggtgctgttactcaaagcagcacctcgggaggctacggtgggcttgctgaccaatcttcctaaactgagcgttgttctggacctgctgaagcatggcacctgcctaaggctgactcgcctgctgtattgcctggccttctcctgcaggcaatatctagcgcaaggaatgatcgtgtcgatatctttgtcagccttgatgcgagtagaagcactcgtgtcggcattcaagggttcacatgatggctgccttgctgacgccgcctcatatttgggcgctgaactgcagcgtttacctcgctgtggttga</cdnaseq>

Protein Sequence

<aaseq>MNNFHVYEAIGRGKHSTVYKGRKKKSIEYFAVKSVDKSQRSKVL NEVRMLHSLDHPNVLKFYSWYETSAHFWLILEYCVGGDLKGLLEQDKKLPENSIHDLA YDLVKALQFLHSQGIIYCDLKPSNVLLDESGCMKLCDFGLARRLKDIEKTNPGDVPQP LKGTPCYMAPELFQEGGVHSYASDFWALGCVLYECYSGRPPFVANEFTQLVKSIISDP TPPLPDNPSRSFQNLINCLLMKDPAERLQWSELCEHHFWRSRMSIIPLPPQPAFDNMV DLSATPYLVERNGDKPSRQSTPPKPRDGLRKKDENSAKVFTPVKNMLSGKKNNAKPSC KADGLKGVNILRMSRVAKRNLQREKDKENYRRHPTEASENDTEVKIENNDMELDFGEN PEGDAPDDNDGSDNPGSAEDEKLSTQGTDGNEENCMSNQMDMLTDEGPVKAETMIKTE HNCSENLDVVATPPSICMRKAQRAKTTSGAAAGSEPSDISAAFWHPTDLAVKPVMPGR KGDKAVETVPMLPFEALPAVDYIKLPREQMNAFNSQILQSLSGTFQVSEKQNIIKYLE MLSINSDAANIITNGPIMLLLIKMLRLSKTSVLRVQIASLMGLLIRYSTILDIELASS GIFNALSDGLRDKHDKLRRFCMATLGELLFYISTQSDQDTKEINAQESPLKDNRATAS WQVPSSVIALVSSILRKGEDDLAQLYALRTIDNICSQGTDWTSRFASQDVISHLCYIY RATGKQENTRLIAGSCLARLARFSSSCIHLILERLAFKDIACTLIKGNSREQQISLNL LNSALVNSQIIPTMNRYIQSLTEEKQLVPGLISLIEQGTDVLRGKTLLFVALLCKNSR RWLPHFFCNAKLLSAVDRLGKEKEGFIHQCTEAFVQLVASLVPGILDTVSSDIQQVMG GKRHGAATALTGRAHPKSIIHLFPVILHLLGSVSFNHRVVTSHVLLQLANLMKILEAP FQARDDFQMTLLRVLEAATEEPSVILNEHKIFTSRILPSLSVLYKGNKDGDARFLCLK ILSDVMIVIFSDSSLTSNEQTVSDLEKISQKYFLPMYPSFAEDEDPIPIYAQKLLVML MEHDYVKVSDILNEATVSRCFEFLLGDLSNANVSNVKLCFALASAPDMDTDILSQLQV VRRIGNLLEFVTAKDMDDFLEPTLELCRAFIIRGISSDKIVALSKEPALLVDSAFSMS IAVDQQSCVMDICDFGGNMGIFLDLVGSSDPHISDLASDCLVLLLKAAPREATVGLLT NLPKLSVVLDLLKHGTCLRLTRLLYCLAFSCRQYLAQGMIVSISLSALMRVEALVSAF KGSHDGCLADAASYLGAELQRLPRCG</aaseq>

Gene Sequence

<dnaseqindica>6199..7317#5120..5989#2524..4107#2371..2430#2215..2293#2074..2135#1425..1500#1210..1262#359..448#171..218#gagcgccaatctcaaatcgaaatcccgctctctctctctctctctctctccccccccattcctccgcctcaaatcgcaaaccctagccgtcgccgtcgacgagaggtcgacgagaagtcgacgagaagaggaggaggagaagctgctgctggtggtggtggtgctccgccatgaacaacttccacgtctacgaggccatcggccgcggcaagcactcggtaacccccctctccgccttcctctcctcgtcttccctgtgttccccgcgcccccggatccgctcggattgggtgcagatgggtgagatttctgatttgtttttggtgtttttttttttttgggtgcggtggtccggaagacggtgtacaaggggcggaagaagaagagcatcgagtacttcgccgtcaagagcgtcgacaagtcgcagcggtccaaggtcctcaatgaggtgagcgcggcgccgtcgtctccctgctctttcatcagtagtagctggtaggcatgcgccgccgcgattttgggtggggatattttgaatcggagggcttggctcctggcgggcctggttaatttggtccgtgaaatggtccttggagtgatttgatctgcgggtgcctatggatttcccggaagcaaatcgtgatatgatatccaagattgatttgatagtttaagtgactgttttagactgtgtggataccgtggctttcgttaaccgctgttttctgggcatgcagagtgcagagtttccttgtaagctgatgttgtttaaatgggcagaatgttacattgttcgttatatagtatcttgatgtactagtggatcgctatttatttcctgggaaaaagcactttacatgcttaagctgggatgctgtttagattttgatttcctgataatcgtgcgaaacaatctatttcttatagccatttctagagaagatgaaatgaggcaacataagttacatttggtgtgctgtcaaatgttatgttatttggtcaggaatgtaccttctctttgagcaaagcgcttaagggtgaagatcagtagtttagataatattttctggatagaagatgagcacatgttctagtcttcaattaaaaaataatcttttagctagcatggtaagaaaaatagttaatgagcctgaggaatgaggatgtttgcttactccactaatagtacttctgaacttttctttgcaggtccgaatgcttcattccttagatcatccgaatgttctgaaattttactcatggtacgtttctaggggactagtgttgtggtgcaataatggcaagcagttcactttttagaacaataatgacaagtatagtctggcagtttggttgcaatcatcgttattgttcccttaacattgtactacaaaccatacttatgcctgtacctgttgtaccaggtacgaaacctcagctcatttttggttaatactggagtactgcgttggtggagacctaaagggcttgcttgagcaggtatctcgcttgtcagtttaagcagcataccattttctagttcaaagcacgctgtcagctgtttacttgtacaatagcacacgtttgtatttgatttgcatttgcttcatttacaaatatttctctctctctctctctctgtgcatgctgagatgtcttttgtttgctccttaagaaattttttaaaaaaacatgttcattttttttagcttatagctggtactccttccatcccaaaatataacaacttcttcacctacattctcttcttaaccaatcacaaccttcccccatttaatttctctatttactttcttttctcaaccaatcacagcctcccctccccctcaatcttcatacgggcttaaccctaaaacttcttatattttgggatggaggtagtagaatggaaggaaaattcattgtcaaactgacaggttaaaaacttttgctttggctgtctatttatgtacatgtcacatttaagtatgctctaatatgtacccaaatttttagtattttgtgttagtatatttgcatatgaacattttacatttcttcaatgacctgcaggataagaagctgcctgaaaattctatacatgacttggcttatgatcttgtgaaagctcttcagtaaagtttctttccttgtttcattatttctactgtatgatgtgtgaaatcttatttgtcaaaacaatttggactttaggttcttgcattcacaaggaattatatattgtgatctgaaaccatcaaatgttttacttgatgaatctgggtgcatgaaggtacttactggatcaaataattcatacagtgaggcaatagcttgtaactaacgatatatatttctttaattttctagctgtgcgattttggattagcaaggcgtttgaaagacatagagaagaccaatcctggagatgtgagcttccattttccttttgtatctcatttcatttccttgtgtttccatctacatttgattattttcccagcttaatttctcctcgtgtaggtgccgcaacctttgaaggggactccatgttatatggctcctgagttgttccaagagggaggagtgcattcatatgcttcagatttctgggcacttggttgtgtattgtatgaatgctattcaggaaggcccccttttgtggctaatgaatttacccagctagtcaaatctataatttcagatcctacaccacctttgcctgataacccctcaagatcctttcaaaatctgatcaattgcttactcatgaaagatcctgctgaaagattacagtggtctgaactatgcgagcatcacttttggaggagcagaatgtcaattattcctttacctcctcagcctgcctttgacaacatggtcgacctttctgctacaccatatttagttgagagaaatggtgataaaccttctagacagtccacaccacccaagccccgtgatggcctacggaagaaggacgaaaattctgctaaggtgttcacccctgttaagaatatgctaagtggtaagaaaaacaatgcaaaaccttcctgtaaggctgatggattgaagggtgtaaatatcctcaggatgtctcgtgtagctaagaggaatttgcagagagaaaaagacaaggagaactacaggcgacaccctacagaagcttctgagaatgatacagaagttaagattgaaaacaatgatatggaacttgattttggtgaaaatccagaaggtgatgcacctgatgacaatgatggatcagacaatcctggatccgcagaagatgaaaaactttccactcaaggcactgatggtaatgaagagaactgcatgagtaatcagatggatatgctcacagatgaaggcccagttaaggctgaaaccatgataaaaactgaacataattgttcagaaaatcttgatgtggtggccactccaccaagtatttgtatgaggaaagcacaacgagcaaagacaacttcaggtgccgcagctggttccgagccatctgacatctctgcagcattctggcatccaacagatcttgctgttaaaccagttatgcctggtaggaaaggagataaagctgtagagacagtccctatgcttccgtttgaagctcttcctgctgttgattatattaagttgccacgggaacaaatgaatgcattcaatagtcagatacttcagagtttaagtggtacttttcaggtttcagagaaacagaatatcatcaaatacctggagatgttaagcatcaattctgatgctgcaaatataatcacaaatggtccaattatgctgttgcttataaaaatgctccgtctgtcaaaaacttcagtattgcgtgtccaaattgcttcacttatgggattgttgatacgctactccactatccttgatatagagctggcaagttcagggatttttaatgcactatcagatggtctaagggacaagcatgataaactcaggcgattctgtatggcaacactaggagaattactgttctacatttctactcaatctgatcaagataccaaagaaatcaatgcccaagaatcccctttgaaggataacagggccacagcttcttggcaggtcagaaactcaaaatgatgagtatgttatgtctgcatgcttagtaatttatctgcatgttgttgggtcatatgcttaggctatcttatatagtaacctgcagttagaagatcaatggcaagttactggtgctagaaatatctaagagcttttactgattcaatctgattcctgcatggaacgtaggtgccttgctcactgtttatgttatgaagtggaagctccttttggcctcttatgtgtggcgcttgttgggaagtgttcttcgtgggaagggtcatttgaccctttctttgtaaatatttctctcttctcaatggaatgacgcttagttctgcgttttagaaaaaaaaagaagtggaagcttctttcagttgaaagtatatactgcattattgaatttttcacataaccacataatcacactgcccaccttcataactattactataatatatggactaaattatgtttatatacatgctcttttctttgattttgtgtctatgcacatgtttattgttagtcaaacctgtatgattttacagaaaaccacataccaatcctgttcaatggctagcctaatcaggagtgattcaaattacatctatccgttagttttagtgattgtatgtccatgaattgagggtggatctctttgtcaatttctgtttctgcaacttgataaccttgctctcacctataggttgaactttgcctctccaaagggcctgatgaacttaagggacataattccataccaattttctttcaagtgttttaacctgctttccttttaatgactatattcttgtatttgtggaaccatatataggtcagctatgtaatagtgttaatgaattaatgagacctttactttcatatcttactggtcaagtagtatatatatcatatatatatacatacatgtgaggaatccttttatcttgattcacaactatgacattaattattgtgttttattaatgattttactttgcaagttgtgcaggttccaagttctgtaattgcgctggtgtcatcaatcttgcgtaaaggtgaagatgatctagcccagctttatgctttacgaaccattgataacatctgtagccaagggacagattggacttcacgtttcgcttcccaagatgtaatcagtcacctgtgctacatctatagagcaactggtaagcaggagaatacaagacttattgcaggatcttgtttggcacgcttagctcgcttcagctcatcttgtattcatttaatactggagaggctggccttcaaggatatcgcatgcacactcattaaaggcaattcacgtgagcagcagatcagtttgaatcttctgaattcagcactagttaacagccaaatcataccaaccatgaaccgctacattcagtcgttaacagaagagaagcagttggttcctggactcatctctcttattgaacagggaactgatgttctgcgtggcaaaacccttctatttgttgctcttctttgcaagaacagtcgaagatggcttcctcatttcttttgcaatgcaaaactactatcagcagttgatagattgggaaaggagaaggaaggcttcattcatcaatgcacagaagcatttgtgcagttggttgcttcattggtcccaggcatccttgacactgtctctagtgatatacaacaggttatgggaggcaagcgtcatggagctgctactgctttaactggacgagctcatccaaagagcataattcatttgtttcctgttatccttcatcttcttgggagtgtttcattcaatcacagagttgtgacgagccatgtattgcttcagttggcaaatcttatgaaaattttggaagcaccatttcaggtatgatctaagaacttcacgcacggttatgccatgatgaaaaaacatgacgaccacattcattttgtaactgcacttaagtgtcaaatcaatcccatcctttgttttgatgctgcgctgtggctcttgccttaacagttttgcattactactgtattttttaacatatcttgaccttatctgattatttacgtgtcttatacatccaggctcgggatgattttcaaatgacactattgagggttcttgaggcagccacggaggagccttctgttatacttaatgaacacaaaatattcacaagtcgaatccttccaagcttatccgtcttgtacaagggcaataaagatggtgatgccagattcctatgtttaaagatactgtccgatgtgatgattgtgatcttcagtgactcttcattgacgtctaatgagcaaacagtatctgacctggaaaagatctctcagaagtattttctccccatgtatccatcatttgcagaggatgaagatccaatacctatatatgcccagaaacttctggtaatgctgatggagcatgattatgttaaggtttctgatattctcaatgaagcaacagtatcccggtgctttgaatttttgctaggagatttgtctaatgcaaatgtaagtaatgtcaagctttgctttgcattggcatctgctcccgatatggacaccgacattctttctcagcttcaagttgtcagaagaatagggaacctgctggagtttgtgactgcaaaagatatggatgattttctagaaccaaccttggaactttgcagagcattcattatccggggcatcagcagtgacaaaattgtggccctttccaaagagcccgcactccttgttgatagtgccttcagcatgagcattgctgtcgatcaacaatcatgcgtcatggatatatgcgactttggtggcaacatgggcattttcctcgacctagttggaagttcagatccacatataagcgatttggcatcagactgcttggtgctgttactcaaagcagcacctcgggaggctacggtgggcttgctgaccaatcttcctaaactgagcgttgttctggacctgctgaagcatggcacctgcctaaggctgactcgcctgctgtattgcctggccttctcctgcaggcaatatctagcgcaaggaatgatcgtgtcgatatctttgtcagccttgatgcgagtagaagcactcgtgtcggcattcaagggttcacatgatggctgccttgctgacgccgcctcatatttgggcgctgaactgcagcgtttacctcgctgtggttgagccgaagtttggtcaggtgctggcttggttggcattgtgcaagtgatgttcatagggatcataagagagggcctcagccttgtatttcttcaccgtttcttgcaccaagctatgatcatgggttctcaccatccgaagtgatgactgatgaaccatccgattggctgtgtgatcatttatctatatgcaacgtggagctgctgttctttcagtataccatttctggccaaatctggagaggcagcttgtggccaaaacccttcctgtatttcccctgtgccaattttggttggcgtttcatcggttttcagtttctcaccatgtaatgctgtagagtttcatagcccttaaaatcatgtatatttgtacactcccttttactttaccaagcaacggggtggaaatttattgttatgaatgcctgtaaagctctgtgaatctgtgaaccaacaggactatattggagcatggtgctatcaacct</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0259400, RefSeq:Os01g0259400