Os01g0261100

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Revision as of 04:33, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0261100| Description = Zinc finger, RING-type domain containing protein| Version = NM_001049182.1 GI:115435777 GeneID:4325119| Length = 559...")
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Gene Name

Os01g0261100

Description

Zinc finger, RING-type domain containing protein

Version

NM_001049182.1 GI:115435777 GeneID:4325119

Length

5599 bp

Definition

Oryza sativa Japonica Group Os01g0261100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:8785603..8791201

Sequence Coding Region

8787370..8787700,8789507..8789541,8789667..8790596

Expression

GEO Profiles:Os01g0261100

Genome Context

<gbrowseImage1> name=NC_008394:8785603..8791201 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:8785603..8791201 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggagctaattgctgtatagctgcaaaagagaggcctcagccatgtgttactccaattgaagtgtcagcattcaggaacgtaagacactctccatcatggagcttccggtgggataaccgcacacacatagaagacataatggaaatgcccgcattgttttccaaccatagtagtggaagcattcggcctgaaacaaagagtggctcaattgcgccaactgatggcttttctaacggaggcagcccttctgatatgttcaacaagctcaagtgccataaatctgacaggaagagggagtcatctaagattgcgagatctgaccttcgagcaggtagatccaccacaagcaattcttcccctgaggcaaagctttccagaaaatcgctagacacagtaagtgtggcttcagattcgaagatgtcaatctctgttccttcaacgccgcctgctatatccagagcagatccttcatcatcctccagggggcattctctaccaacagatgcagattcaatgaggaaagcacgtcgatcaccagggtatcaactgtatagacaggtctccgacagcaagattccatctctcaggtctctcaacgagggcgcctctcctgaaggaaggccatcctcctccatgctctcagtctgcagcaacgatttatctgcagtaggatcacatggcgagtcatctgatggttggtcaatgcgaacattttctgaaatggtcgcatcatctcagagagagagatggtcagttgatagtgagctcttaggttctgtttcgagtaaaatgacaagatcaaatgcttctaataatcctactacacattcacctgaccaagaggtgtgcaagctatgtttaaagctattaaaggaacggtccacatggaatgctcaggaactggctgttgttgctgttttattgtgcggccatgtttaccatgctgactgtttggatagcttaactgcagaagctgacaaatatgatcccccttgtcctgtatgcacccatggtgagaaatgtacagtgaagctatttgggaagttggaatcaaagacaaagaacaagatacctaaaaatgtgatagttgatgttaatctagatgggagctctaagcatcagaaggaaagtaggagagagcccagattaggcacaagttctagcttgaagggctcgtttagtcgcccgtttttgagaaggcatttctctattggctctcggccatcccagtcaatttcagagagcgagtctgccagaaagaagggcttctgggcaaggcactggagggaatag</cdnaseq>

Protein Sequence

<aaseq>MGANCCIAAKERPQPCVTPIEVSAFRNVRHSPSWSFRWDNRTHI EDIMEMPALFSNHSSGSIRPETKSGSIAPTDGFSNGGSPSDMFNKLKCHKSDRKRESS KIARSDLRAGRSTTSNSSPEAKLSRKSLDTVSVASDSKMSISVPSTPPAISRADPSSS SRGHSLPTDADSMRKARRSPGYQLYRQVSDSKIPSLRSLNEGASPEGRPSSSMLSVCS NDLSAVGSHGESSDGWSMRTFSEMVASSQRERWSVDSELLGSVSSKMTRSNASNNPTT HSPDQEVCKLCLKLLKERSTWNAQELAVVAVLLCGHVYHADCLDSLTAEADKYDPPCP VCTHGEKCTVKLFGKLESKTKNKIPKNVIVDVNLDGSSKHQKESRREPRLGTSSSLKG SFSRPFLRRHFSIGSRPSQSISESESARKKGFWARHWRE</aaseq>

Gene Sequence

<dnaseqindica>1768..2098#3905..3939#4065..4994#cctctccttccctcttctctcgcaatcgcatcgcaccccctcccccccgagcttgactccggaaaccctaggcagcccagccatctcagctctcggcgacggcgaggcggcgctcgctgggggtgcggccgcggcggctgagcttttgccagatccggaccaccgcccccagttccggcgccgcggcggcggcggaggcggaggcggaggtgtgggagtcgttggcgattcggccccgggggtgggtgggagagggcgccgctctgatcggtgctccgactccgagtggttctaaggtaattcgtgtgggggtggaggggttggggttggggttgggtgggtgggttccgctgcggttggtggggggaaacggggggaattgcgggtgcgggtgaggccgtggcttgcgtaggtggggtagctgggggaactgtggtctgtgtggggggttttgatcgggtgctggtttgagtttcgctgctcgaaatttgctgcttcgtttgctcccccatgctatgcataatttgaaaatatatgttgagctcgatctcgcatgttagtcttttgggtaccctagtcttttcccccaattttacctgctggatgtaccattacttttgaatggtgtattagtttgttggttcgaaattatcagctgtattaatgttcttgtcagctaaaaatatgttttactgataattgtgcataatattacattatataaaatcagactgataaataagtatgctgcgttttttttgggtatttctttagtctgatacggcaatatcatgactgagatgttaaataatttgcaattcggtccactggcattaagatgagatgcttagagtgttgtgtgggaggaatcagtgccctttgagtgtgttttagttttggaatgtcctgattctggtctacctaactgtggctttcttccgtcacatagttgcaccctatgtggttagccagcttccccagtttgttccttcaattatactcaagcatctttttccacttctttttgctttcttattgtgaataagtgaagtggttgctttatggatgctgatgttcagctcgtggggtatttagaaatggcattagtggtttcttatctatggagatcgtgctgctgttttcatgaatacttgatatgtagactggaaaattgaagagggcgacatgtactaagaaaatttatgtcatgcatgatgtttgcggtttattctcatacttggactaatgaatttcatctggccatacccaaccatcaaatatgtggaccccaaattaggtcttatttctttattctttattcaagttaatttcctctcttccctgtcgtcatatcaacatatgtatgtggttgccactgtgtatgcagcttttctaggaccacggggataaagaaagtatcatataccagataggaatttgttgtttgctaagtttaactatttcaagccttacatttctgtctagactaggttggtgttcttttttgttgcttcgttgggctttattttctttttgacgttgtacctctaattgtctctggaggcttctattgtagctcaaagtacactagatagtttttccctgcctttttcattccttggttaaaatatccttattgctcttatttctctttctctctcagctaggaaggatgatcatgttacgttttgctcaagattttgcttcacactgataagatctcagcatttggatgattaacgcatattgaattctttctcaataaacatgggagctaattgctgtatagctgcaaaagagaggcctcagccatgtgttactccaattgaagtgtcagcattcaggaacgtaagacactctccatcatggagcttccggtgggataaccgcacacacatagaagacataatggaaatgcccgcattgttttccaaccatagtagtggaagcattcggcctgaaacaaagagtggctcaattgcgccaactgatggcttttctaacggaggcagcccttctgatatgttcaacaagctcaagtgccataaatctgacaggaagagggagtcatctaagattgcgagatctgaccttcgaggtaatttataaattgttcctatattctttcattcttttatgtttctttatgcattccttcacctgattaaagaatgggattcaacatttcaactttgatgttcttcataacaaagttattgaacctacatggtcatgactaccatttaggacaacagaatgatgcccttgttcactaatgctgttgaatgcaaccataaagagtgaagaactgaggcaacaaaaaatatatattccatttgttttgttttgaacataaacaatttgttttgtgatgttttctttctgaattagcactttgatttaacatgtcatttacttctgaatccttgcacctatgtttattcgatgcatttgcactctcttccagagctagtagaataaagttgacttgtttaatttgctttaccaacatatttattacacaacttccaacagaagataagctaccacctgtaccataatataaaattggaaaggaaaactggggaatattgccaaattcaatgctcttgaccttcccaactgatattcaaatgcaatataattctagatgcatacatgatgctcaatttatctttgattatgaagaaagggtgcaaaagaaatgttgttggtcctgctcaggatctgctttaatttagatattatttttgcacatttccccatgaatctggaatttgcattccctttgaccagtttagcatcctaattgatcttagattctgtttccacccagagcagcttatctcactccattttttgctatttggcattgccttatgtgcgtttgttcataggattatcgaaataaattttaggctctagtttttggtgctcattgctggaaccttctactgtctctgaaggtggattggtatataaccatataacattcacatcgcactttttttggcatggtttttgtggggagcatcctttacccaagggaactttattggcttgtaatatttcatttctttgtaaccaaggttcgaaaacgtaaccatcttgttactattccaaagctttttgactggtactggtgcaaaccagcctgaatacttgaaatttaaaaattgaactttagaaatttgttgatctgttatagccacaattttttttcctggcagttgcagtaacaattatccggcggtaactattattttacttcaacttttgatttgaattcctttcatccagtaaacttgtaacctacttatctggccccggaaaccagcacttctgtgaataccgatttctgaaaccgtgttcatatgtcaatatctcagtgaactacctgccttgcctagtctggaattgttatttcgaatatgaactacctattaatacatagatctacctttaggctgtgttcggctctacctgttcccatccttccctcttttgtttgctgtgcgcatgcttcccaaactgttaaagggtgcaattttttgcaaaaaaaaaaaattctataggaaagttgctttaaatttattattaatctatttttaaagttttttaagctaatatttaattaatcatgcgctttaattaatcatgtgctaaagagacgctatgttttccgtgctaaaaagaagcgttccgaactggctggttcgaatgcagccttagtctatattcagtgataattcatcgaccatacttttaacttatgtgccaggctgtaagatagattttatcatccttatgcagaagacaatagtcttcagcacaggaggagtttttgcctcagcagctatttgctgacaattcccttgctgatttcttctactttttttttcagcaggtagatccaccacaagcaattcttcccctgaggtatgcaatactaatctatatagctgaaacctgaaattattagctgttaccatttaagttttatgtaccttggaagattgaaatgtgctgtttctgataggtttcttcttcaacatattttgtaggcaaagctttccagaaaatcgctagacacagtaagtgtggcttcagattcgaagatgtcaatctctgttccttcaacgccgcctgctatatccagagcagatccttcatcatcctccagggggcattctctaccaacagatgcagattcaatgaggaaagcacgtcgatcaccagggtatcaactgtatagacaggtctccgacagcaagattccatctctcaggtctctcaacgagggcgcctctcctgaaggaaggccatcctcctccatgctctcagtctgcagcaacgatttatctgcagtaggatcacatggcgagtcatctgatggttggtcaatgcgaacattttctgaaatggtcgcatcatctcagagagagagatggtcagttgatagtgagctcttaggttctgtttcgagtaaaatgacaagatcaaatgcttctaataatcctactacacattcacctgaccaagaggtgtgcaagctatgtttaaagctattaaaggaacggtccacatggaatgctcaggaactggctgttgttgctgttttattgtgcggccatgtttaccatgctgactgtttggatagcttaactgcagaagctgacaaatatgatcccccttgtcctgtatgcacccatggtgagaaatgtacagtgaagctatttgggaagttggaatcaaagacaaagaacaagatacctaaaaatgtgatagttgatgttaatctagatgggagctctaagcatcagaaggaaagtaggagagagcccagattaggcacaagttctagcttgaagggctcgtttagtcgcccgtttttgagaaggcatttctctattggctctcggccatcccagtcaatttcagagagcgagtctgccagaaagaagggcttctgggcaaggcactggagggaatagcataactgccagtcatcatcgaggtgagcagtttcccatacttgtactgtgcgaattccattccaaatgcaatttaccagctgtcattttctttcaaaagagaaatccgactgtcatattgcatccctgtatcattgccatatatgattacaaagataaatgtgcttatcttgcccatgtatttcttttctagaaatccctcttgaagaggagctgtactcccaagcgagagcaagcatgcgggagctgaagtcaagccgaatcggtgcaaatgatatgacatggctgttgaacgacctccgcattgaaggtttctcctagccatagtcatattcggccgcaagcacttgtcgtgctggaaagggtctcgatagtagaataacagttgatatagtatactatgcaactgaggtttatttcagagcccagtcgcagtttagtagcgagtaatctaacagaaaaaggggatgatggccttcagagttgagaccgaaggtccattgctgtgttgcaaggttatatataatccagcgtcccagcaatctagttactatgttttgtggttttgtattattggttatgtgccccctttattttatggttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0261100, RefSeq:Os01g0261100