Os01g0367900

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Revision as of 04:40, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0367900| Description = Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator...")
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Gene Name

Os01g0367900

Description

Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1)

Version

NM_001049579.1 GI:115436571 GeneID:4325731

Length

7443 bp

Definition

Oryza sativa Japonica Group Os01g0367900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:15307522..15314964

Sequence Coding Region

15307855..15307875,15308000..15308110,15308711..15308926,15309007..15309185,15309335..15309500
,15309594..15309652,15309745..15309787,15309965..15310034,15310138..15310227
,15310301..15310377,15310457..15310488,15310556..15310744,15310828..15310921
,15311005..15311092,15311178..15311398,15311604..15311677,15311761..15312043
,15312135..15312269,15312401..15312622,15312709..15312888,15312985..15313082
,15313202..15313314,15313836..15313939,15314080..15314202,15314537..15314872

Expression

GEO Profiles:Os01g0367900

Genome Context

<gbrowseImage1> name=NC_008394:15307522..15314964 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:15307522..15314964 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaagccggtgaagtacgacgaggaggaggaggaggtctcgtcctccggcgaggaggaggaggagcagtcggacggcgccgggtccggatctggcgaggaggaggatgaggaggaggaggaggcgcccgcggcggcggccggcgaggcggctggtggggaagaggaggaggtggatgaggaggagatcgaagccgtcaccaccggtgccggcgccgacgaggaagaggaggaaagcggtgcggccgccgccgcccccggggagggcgatgaggagtcgcagtccactgaggacgacgaggccgtcgtgggggaggacgacgacgcagatgaggctgaaggaggtgcagtagtagggaaacgtgagaaagccaggctcaaggaaatgcagaaattgaagaagcagaaaatacaagaaatattggatacacagaatgctgcagttgatgctgacatgaacaataaagggaaaggacgattgaagtacctactgcagcaaactgaaatatttgcacattttgccaaagggaaccaatcaaaagagaagaaaccgcgtggaaggggacgccatgcctcaaagatgacagaagaggaggaagatgaagaataccttaaagaagaggaagatgcccttgctggttcagggggaacacgcttgctttcacagccttcatgtataaaggggaagatgcgagactaccaactagctgggcttaattggctcatacggttgtacgagaatggtatcaatggtatattggctgatgaaatgggtcttgggaaaactcttcaaactatttcgctgctgggctatctgcatgaattcaggggaataactggtccgcacatggttgttgcaccaaagtctactcttggcaactggataaaggaaattcaacggttttgccctattctacgtgctgtgaaattcttagggaatccagaagagaggaaccatataagggagaacctattgcagccaggaaaatttgatgtgtgtgtcactagttttgaaatggcaatcaaagaaaaaactacactgaagcgtttcagctggcgttacattattattgatgaagcacatcgcataaaaaatgagaattctcttctgtccaagacaatgaggatttataatactaattatcgtctccttatcacaggcacaccactccagaataatctccatgagctttggtctctcctcaacttcttgttgcctgaaatatttagctctgctgaaacatttgatgaatggtttcaaatttctggtgaaaatgatcagcaggaggttgttcaacagcttcataaggttcttcgcccatttcttcttcgaaggcttaaatctgatgttgaaaagggattaccccccaaaaaggaaactatccttaaggttggaatgtctcagatgcaaaagcagtactatcgtgccctgcttcagaaagatttggaggttattaatgctggtggtgaacgcaaaagattgcttaacatagccatgcagttgcgcaagtgctgcaaccatccatatttattccaaggagcagaacctggtccaccttacacaactggtgaacatctagttgagaatgctggaaaaatggttctgttagataaattgctgcccaaactgaaggatcgtgattctagggtgctcattttctcacagatgaccaggcttttggatatattggaagattatcttatgtacagaggctatcagtattgccggatagatggaaatactggtggagaagatcgtgatgcatccattgaagctttcaacaaaccaggcagtgaaaagtttgtttttttgctttcaaccagggctggtggccttggcatcaaccttgctactgctgatgttgtggttctttatgatagtgattggaatccacaagctgatctgcaagctcaagaccgtgcacataggataggtcagaagaaagaagttcaagttttccgattttgcactgagtataccatcgaggagaaagtgattgagagggcatacaagaagcttgcattggatgctttggtcattcaacaaggccgactggcagagcagaagactgtcaataaggatgatctgttgcaaatggtaagatttggtgcggaaatggtattcagttccaaggacagcacaattacagatgaggatattgaccgtatcatagctaaaggagaggaaacaacagctgagcttgatgcaaaaatgaaaaagttcacagaggatgctattaaatttaaaatggatgacactgcggaattgtatgattttgatgatgataaggaggaaaacaagcttgattttaagaaactggtcagtgataactggatagagccacctagaagagaaaggaagagaaactactctgagtctgaatactttaagcaagcacttcgccaaggtgcacctgcaaaacctagggaaccacgaattccaagaatgccgcacctacatgatttccagttcttcaacaaccaaaggctcaatgaattgtatgaaaaggaagtccggtaccttatgcaagcaaaccagaagaaagatactattgatggtgaagatgaagatcagctggagcctttgactgcggaggagcaggaagagaaagagcagttgttagaagagggttttgcaacatggacgaggagagacttcaacacatttattcgtgcatgtgagaagtatggtcgaaatgatattaggagtattgccgctgaaatggaggggaagacagaggaggaagttcaacgatatgctaaagttttcaaggagagatacaaggaactgagtgattatgatagaattatcaagaatattgaaaggggagaggccaggatatcacggaaggatgaaattatgagagccatcgggaagaagttagaccgctataagaatccatggttagagttgaaaatccagtatggacagaacaaagggaagttctataatgaggaatgcgaccgttttatgctttgcatggtgcataagcttggttatggaaactgggatgaactgaaagctgccttccgcatgtcgcctttgttccgatttgattggtttgtcaagtccagaaccacccaggagttggctaggagatgtgatacccttatccgtctagttgagaaagagaatcaggaatatgatgagcaagaaaggcaggcaaggaaggacaaaaggatggctaagaacatgacaccgacaaagcgatctgcgttaagggtttcagaaggtgaaactactccatcgaattctttcaagaggcgacgccagtcccttatggatgactatgtgggctcgggaaggcgtaagcgaggttga</cdnaseq>

Protein Sequence

<aaseq>MAKPVKYDEEEEEVSSSGEEEEEQSDGAGSGSGEEEDEEEEEAP AAAAGEAAGGEEEEVDEEEIEAVTTGAGADEEEEESGAAAAAPGEGDEESQSTEDDEA VVGEDDDADEAEGGAVVGKREKARLKEMQKLKKQKIQEILDTQNAAVDADMNNKGKGR LKYLLQQTEIFAHFAKGNQSKEKKPRGRGRHASKMTEEEEDEEYLKEEEDALAGSGGT RLLSQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEF RGITGPHMVVAPKSTLGNWIKEIQRFCPILRAVKFLGNPEERNHIRENLLQPGKFDVC VTSFEMAIKEKTTLKRFSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQ NNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSD VEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNH PYLFQGAEPGPPYTTGEHLVENAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILED YLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVV LYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ QGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEETTAELDAKMK KFTEDAIKFKMDDTAELYDFDDDKEENKLDFKKLVSDNWIEPPRRERKRNYSESEYFK QALRQGAPAKPREPRIPRMPHLHDFQFFNNQRLNELYEKEVRYLMQANQKKDTIDGED EDQLEPLTAEEQEEKEQLLEEGFATWTRRDFNTFIRACEKYGRNDIRSIAAEMEGKTE EEVQRYAKVFKERYKELSDYDRIIKNIERGEARISRKDEIMRAIGKKLDRYKNPWLEL KIQYGQNKGKFYNEECDRFMLCMVHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQE LARRCDTLIRLVEKENQEYDEQERQARKDKRMAKNMTPTKRSALRVSEGETTPSNSFK RRRQSLMDDYVGSGRRKRG</aaseq>

Gene Sequence

<dnaseqindica>7090..7110#6855..6965#6039..6254#5780..5958#5465..5630#5313..5371#5178..5220#4931..5000#4738..4827#4588..4664#4477..4508#4221..4409#4044..4137#3873..3960#3567..3787#3288..3361#2922..3204#2696..2830#2343..2564#2077..2256#1883..1980#1651..1763#1026..1129#763..885#93..428#atcgctcggtccttcgaacccccaccgcctccgtcgacacattccgcgctcgaatcgaatctacgaaaccctagcccgccaccgccgccccaatggcgaagccggtgaagtacgacgaggaggaggaggaggtctcgtcctccggcgaggaggaggaggagcagtcggacggcgccgggtccggatctggcgaggaggaggatgaggaggaggaggaggcgcccgcggcggcggccggcgaggcggctggtggggaagaggaggaggtggatgaggaggagatcgaagccgtcaccaccggtgccggcgccgacgaggaagaggaggaaagcggtgcggccgccgccgcccccggggagggcgatgaggagtcgcagtccactgaggacgacgaggccgtcgtgggggaggacgacgacgcagatgaggtgagctgagggggctagggtttgggtggtcgaaccgggattcgggtggtgcccattagatttataatattttggtaatatattgagctgcttctgtaaattgtacgagtttggggggccatttcctatgcctgcattttttttctagctttgcctctattttgttgtcagtgaattaaggttgtgttaacagtgggagtttccttgcattatgtgctgcaatgtagctgtcatttaagtgtcattctgtgtatttctacgcaaaattattaggagcaataagtagggtttagtttctgaattgtcgagtcctgcctaacttttcccattacaggctgaaggaggtgcagtagtagggaaacgtgagaaagccaggctcaaggaaatgcagaaattgaagaagcagaaaatacaagaaatattggatacacagaatgctgcagttgatgctgacatggtttgctcctataagaatccgtcaatacaaatgcctttcagcacatgatatggcatatcatgtgcacataatttatttcaacctgctttgaatacctttgtgtatgttgccttttgccctgattaatatttttttaacagaacaataaagggaaaggacgattgaagtacctactgcagcaaactgaaatatttgcacattttgccaaagggaaccaatcaaaagagaagaaaccgcgtggaaggtaaaactggttttgtttgtgtagatagtactttactttgtgtgttcaaccatcctggaaattgcatagatctttgctgttgtttgtcgtgctgctggaactgggatataatttagaatgtgtactttgatgctggaatatgttaaaataattccatactgaaggactggtgtttcaaacgtacatggtaaacatttctgtttgatatgtttgtagatatcagtaattgttggtctcttcatctggttggtattacgaaattgtgaattaatgattttaagaatgcaacataatgtttattttaactatattattattacttcaatttgtgggattaaggaaattctgaatacatttgtttagccatacaattaaccttgcatagttatagttcttatgggcatttgggacacatcacctgctatttatgtgcagggtcataatatgtaattgattttaggaatcttgtgcctcttttttgatgttccatgatttgattgtctaacattggtaaactgtaggggacgccatgcctcaaagatgacagaagaggaggaagatgaagaataccttaaagaagaggaagatgcccttgctggttcagggggaacacgcttgctttcacagccttcatgtgagctcctttcccttcacaattatttgtaactgtatcataagagtatgctgccaccattctgttaatataagttgaataataaattgttaaaatgtaatatattttttgctctgcaggtataaaggggaagatgcgagactaccaactagctgggcttaattggctcatacggttgtacgagaatggtatcaatggtatattggctgatgaaatggtatgttagttgtgtactcctaagccaaagtcaataaaatgtccccaatatattattgaatgatactgtgcttatacttataaaatcatcattcagggtcttgggaaaactcttcaaactatttcgctgctgggctatctgcatgaattcaggggaataactggtccgcacatggttgttgcaccaaagtctactcttggcaactggataaaggaaattcaacggttttgccctattctacgtgctgtgaaattcttagggaatccagaagagagggttagtttacttagcctccgctctccaaccattcttatgaacaacttctgatgttgtactgaacattttgcattctgtttggtcagaaccatataagggagaacctattgcagccaggaaaatttgatgtgtgtgtcactagttttgaaatggcaatcaaagaaaaaactacactgaagcgtttcagctggcgttacattattattgatgaagcacatcgcataaaaaatgagaattctcttctgtccaagacaatgaggatttataatactaattatcgtctccttatcacaggcacaccactccaggtaggtctcccctggctgtgctctttttttggactgtagccatggtcaaagtaattatgttggtttacatcctcaagcatttttttgcttttattctgataattcgttgatgctatgattgatgtttgcagaataatctccatgagctttggtctctcctcaacttcttgttgcctgaaatatttagctctgctgaaacatttgatgaatggtttcaaatttctggtgaaaatgatcagcaggaggttgttcaacagcttcataaggtgagtaatataactcccatgctcaatggctcattatgctaataatttgggacaacctgcatagttcattcatgtaaattcttctatgaaggttcttcgcccatttcttcttcgaaggcttaaatctgatgttgaaaagggattaccccccaaaaaggaaactatccttaaggttggaatgtctcagatgcaaaagcagtactatcgtgccctgcttcagaaagatttggaggttattaatgctggtggtgaacgcaaaagattgcttaacatagccatgcagttgcgcaagtgctgcaaccatccatatttattccaaggagcagaacctggtccaccttacacaactggtgaacatctagttgagaatgctggtatgttcatgtcacaatttccattgtactgttgccaaaggtacagttcaatatttaaccttccctcctcacaatatctgtaggaaaaatggttctgttagataaattgctgcccaaactgaaggatcgtgattctagggtgctcattttctcacaggtgattatattccatcctcatgagattcaaatggcttttatactacgtgcattgattttatgatacttagctgtgtataacatgtacataattcatgtgtggatatgatctgagttctctattgttcctaagcatgttaacgtcacacataatttggtttcttcaaatcttgtgtttgactttgacatttatgtccattctacagatgaccaggcttttggatatattggaagattatcttatgtacagaggctatcagtattgccggatagatggaaatactggtggagaagatcgtgatgcatccattgaagctttcaacaaaccaggcagtgaaaagtttgtttttttgctttcaaccagggctggtggccttggcatcaaccttgctactgctgatgttgtggttctttatgatagtgattggtatgctgttatgtgcaaattgttttcttctgaacccatgaatatgtatgttgaatatttagtgttaatgtgttgatgtcttcaggaatccacaagctgatctgcaagctcaagaccgtgcacataggataggtcagaagaaagaagttcaagttttccgattttgcactgaggtttgtcaatcttttctttagaatattacgtaacaatcttttgtattgatatctaagataggatgacgaaaacttaatttcagtataccatcgaggagaaagtgattgagagggcatacaagaagcttgcattggatgctttggtcattcaacaaggccgactggcagagcagaagagtatgtttttgctgcttgtattttatgtttaagaaggcattcatgcagtagtaagatatggatttattttgttcttctttcagctgtcaataaggatgatctgttgcaaatggtaagatttggtgcggaaatggtattcagttccaaggacagcacaattacagatgaggatattgaccgtatcatagctaaaggagaggaaacaacagctgagcttgatgcaaaaatgaaaaagttcacagaggatgctattaaatttaaaatggatgacagtatgtacccttctcccgcagtctctttctttctatcactcaggtctaacttagtctttttatgcagctgcggaattgtatgattttgatgatgataaggtaacaatctcttactttatttctctgctgtcagtttggaagtttacttaattccatttacattcttgatttcttgaaggaggaaaacaagcttgattttaagaaactggtcagtgataactggatagagccacctagaagagaaaggaagagaaagtaagtctctatctctatgtgtgcatgcacacgtctggtgctcaaactgacctaattttgtttgttactctagctactctgagtctgaatactttaagcaagcacttcgccaaggtgcacctgcaaaacctagggaaccacgaattccaagaatgccgcacctgtaagttttctcttgcctctttcattttgtgaaaaaaaaatcatgattaccttgtttgctctctttagaactactgtcagctcatattgtttttgtttgtcagacatgatttccagttcttcaacaaccaaaggctcaatgaattgtatgaaaaggaagtccggtaccttatggtaatttcctagctaaaatgcttgtattgttttgctagatgttgagaaactagctcttggactccatgttgtgtctaatgtgccagtccgattaaatagcattgttcccgtactcagttaattgtttgccaattattattgataatcccaatgctaacttgagaaaaattattccagcaagcaaaccagaagaaagatactattgatggtgaagatgaaggtaccgctgattctcgctttctaagttataattgtgcataacatcatccagctcaatcatgctaatgtatataatacttgcacgatactcagatcagctggagcctttgactgcggaggagcaggaagagaaagagcagttgttagaagaggtaggtggcaatgctttctggatttccttacctgcctcttttgtccatacttgtctttaactctggttttgttttcggtttgcaaaatcatagggttttgcaacatggacgaggagagacttcaacacatttattcgtgcatgtgagaagtatggtcgaaatgatattaggagtattgccgctgaaatggaggggaagacagaggaggaagttcaacgatatgctaaagttttcaaggagagatacaaggaactgagtggtaagcaagtgtttcaattgagtatacatgattaataaattgttaattagtacataaatcttcaccaaacagctaatttcttatgtggtgaatggtgagttgagaactgaagattattggctgatcattattattgactgtccaaccagattatgatagaattatcaagaatattgaaaggggagaggccaggatatcacggaaggatgaaattatgagagccatcgggaagaagttagaccgctataagaatccatggttagagttgaaaatccagtatggacagaacaaagggaagttctataatgaggaatgcgaccgttttatggtatgctctatcataccatctcactttctgcacacatttgttttcaaacgtgacatgtctaattagttgtcacatttcagctttgcatggtgcataagcttggttatggaaactgggatgaactgaaagctgccttccgcatgtcgcctttgttccgatttgattggtttgtcaagtccagaaccacccaggagttggctaggagatgtgatacccttatccgtctagttgagaaagagaatcaggaatatgatgagcaagaaaggcaggcaaggaaggacaaaaggatggctaaggtacctctgttcatttcaccttccaagatctttatttcattgtttgaggctttatgcactactttgtgtactgttttgtgtagtactttcttcgtttcacaatgtaagtcattttagcatttcccacattcatattgatgttaatgaatctagaatgtgggaaatactagaatgacttgcattgtgaaacggagggagtatttcttaagagttaggacatgctttggtggttgccatgcttttccacaatgttatgcctgaagtgtggcatatacaatttgtggccattaacaattattgaccacaattgtggtaacatttagcaaaacaatgtgacactggtgctaagaaagcatggcacgccacaagattggcaaggacaaaacgctagtctaatacatatagttgaaaaatggccacttcatgtgtggcaacttgtggcaccaagtcatcaccaacctaatttcctgcaaatggatatatggcttttatagggctggtgcaaagggacatttgatattatgccatccttatgatatgagtggcatacattttgtatcaatctatcttgctaatctcctaatgtatcttctgttgcagaacatgacaccgacaaagcgatctgcgttaagggtttcagaaggtgaaactactccatcgaattctttcaagaggcgacgccagtcccttatggatgactatgtgggctcggtaagctaagctatcatctagtatggtgtcgtgaaatgacaagtcatgcacgttttgcaggaattttacatggtactctgtacttaggaatgcagtgctaatcagctgtactaatattttacagggaaggcgtaagcgaggttgatcgggcgttgcctgctgctccctttcaagcttgtcggaagtctgggagagctttgaaatgtgcgcgctatgtgatgtttaaagcctctaggcgcacttaactcatcgctgaggcctaactcagtatgatagtgtagtggtatataatactatatgttttctctgcggggatttcatgaccgctctggctagcctatgcattaggaatcagatgtactatggattatccaactttggtagaggtgaactcatcgaagctacccttttaaatccctatgcttatgttacattggccaaaagtccgctcctaatccgagtattctatcttccgagt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0367900, RefSeq:Os01g0367900