Os01g0550600

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Revision as of 04:44, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0550600| Description = Conserved hypothetical protein| Version = NM_001185483.1 GI:297720100 GeneID:9266554| Length = 2896 bp| Definition ...")
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Gene Name

Os01g0550600

Description

Conserved hypothetical protein

Version

NM_001185483.1 GI:297720100 GeneID:9266554

Length

2896 bp

Definition

Oryza sativa Japonica Group Os01g0550600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:22285432..22288327

Sequence Coding Region

22285432..22286653,22286835..22287853,22287947..22288327

Expression

GEO Profiles:Os01g0550600

Genome Context

<gbrowseImage1> name=NC_008394:22285432..22288327 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:22285432..22288327 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtccatgtccatgtccacagctactaccactccagcagtgctccgcctgtcgacggacatggcgatgtccgagtgcgcggcgacgatgccggcgacgacggcgcaccaccaccaccaccacgccgttgcgtacttcggtctttcttgcgctctcgccgtgctgcatcgtcgctcgggtggtggtggtggtgggtgtgatcttggcgccgggccgcggcggtgccggtggtcgcggcggagagagctcgcgctgcgggagagggtcggggagctggagagggaggtggaggagctccggcggaggaggggggaggatgctagggccaacgagaaggtggccggcatattcgcggcgcacgagcagcggtggttcgcggagcggaaggggctgcggcggcaggtgcacgccgtcgtcgccgcggcgcgggcgcgggaggcggcgcacggcgaggccgtggcggagctgacgaggcagctcgaggagcaggagcagcgcgcggcggaggccgcggagcaggaagcggggcggcgggaggaggccgaggggaagctgcgtgcggcggaggaggcggcggagcgcgccgggaaggaggcccaggagcacgccgccgagctgcggaagcacagggcggcgctcgcggagctcgcgaccgcgcggcgggagctggaggcggagcttgcccgcgcggcgcggcgcggggacgcggcggaggcggagctcggggaggccctcgagcgccgcgacgaggccgcgtcgacggcggcggagctctccgcggagtgcgcgcgcctgcggcgcgacgcggagcacaaggacaagatcctctccgcgatgctgcgcaagtccaagatcgacatggaggacagggagatgctggtgcgcgaggtgaagatgtgcaaggccaggcggaagcaggcggagctggaggccgaccggtggcggaagatgtgggagtcccgccatcgccgcggttccaggtcgtcggcgaggtgcgccgccgcggcggaccaccctggctgctccgacaagctgacatcccccgacgccgccgtggcgccgtgcgcgcacgacaccaagatactcttcgtggaccgcgtcgaggacgccgacgccgccaagaaatgccggcacacggcggcgccgccgccgccgccgacgaaggatcccaccaccgtcgaatgcgtcgaccgctatcccagccacgtcgacgacaagcctgtggtggaggagtaccaggatttgcaggagtggttcaagatggagacggagaagtacacgagcatgatccggcgccggcacagcgcggaggtggaggcgttcacggagcagctccggctcaaggacgagaagctggaggcgttccggtggcgcgcggcgagcatggacgccgaggcgtcgcggctccggtccaggctccaggagctcgaggcgcggctgtcggagcaggagcagcgccgcgccgcgctggaggcgctgctcgtcgctagggacgacgagaaccggtcgctcatggagcggctcgccgcgtcggacgaccaggggcgtgccctcgacgtcgtcgtcgtcgacggcggcggcggcggttgcgagcatcgcgctccgcgctcgccggagggcgctgaggctgcggatgctcgtctcgcggtcgcggagatcaaatcgctcgagccggtttcgccgggtggggacacgaacaaggtgttcgacatggaagaaacagaggcgcgcgacgtcgagatctcggttcagaacgacgtgtccgccgcggtgtcgccggacgagcttcagctggtcgaacacgacgaccaccgggcgatcgcgccggcgcgaaactcgtacacatgcgagatcgaggaggaagaagacgaggagaaggaactgccctcctcctcctcctcctcctcgctcgcgctcgtggtcgcggcgccgccggagcagaggaccacggcttccaagatggacatccaagcgctcgccgtgtcgtacaagatcaagaggctgaagcagcagctgctcgtcctcgagaatctggccgccgcagcagccggaggcaaggacacggtgaccaccgcaacaaatccgtcaaccaacaccgccgccgccacagccgccggcggcggcggcggcggcaggcagcagtatccgaggagctaccagatgatggtgtccttcctgagcaagcacgtcaagaggtaccagtccctcgaggacaagatcgacgacctctgcacaagaatggaggagagcaagcgtggcggcgggcgggagcggcatcatcggcggcggcggcagcggcgggagagcgaggaggacgggagcggcgaccgggagcagagcgcggcgctggcgcggttcttggaggagacgttccagctgcagcggtacatggtggcgacggggcagaagctgctggagatgcagtccaggatcgcgccgagcctggaacgcgccgccggcaatggcggcggcaacgacggcgtggacatggggaggttcatggacgtggtgggcgcgctgctgcgggacgtgcagagggggctggaggtgcggatcgcgaggatcatcggagacctcgagggcacgctcaccttccatggcatcctccacaccaccttctga</cdnaseq>

Protein Sequence

<aaseq>MSMSMSTATTTPAVLRLSTDMAMSECAATMPATTAHHHHHHAVA YFGLSCALAVLHRRSGGGGGGCDLGAGPRRCRWSRRRELALRERVGELEREVEELRRR RGEDARANEKVAGIFAAHEQRWFAERKGLRRQVHAVVAAARAREAAHGEAVAELTRQL EEQEQRAAEAAEQEAGRREEAEGKLRAAEEAAERAGKEAQEHAAELRKHRAALAELAT ARRELEAELARAARRGDAAEAELGEALERRDEAASTAAELSAECARLRRDAEHKDKIL SAMLRKSKIDMEDREMLVREVKMCKARRKQAELEADRWRKMWESRHRRGSRSSARCAA AADHPGCSDKLTSPDAAVAPCAHDTKILFVDRVEDADAAKKCRHTAAPPPPPTKDPTT VECVDRYPSHVDDKPVVEEYQDLQEWFKMETEKYTSMIRRRHSAEVEAFTEQLRLKDE KLEAFRWRAASMDAEASRLRSRLQELEARLSEQEQRRAALEALLVARDDENRSLMERL AASDDQGRALDVVVVDGGGGGCEHRAPRSPEGAEAADARLAVAEIKSLEPVSPGGDTN KVFDMEETEARDVEISVQNDVSAAVSPDELQLVEHDDHRAIAPARNSYTCEIEEEEDE EKELPSSSSSSSLALVVAAPPEQRTTASKMDIQALAVSYKIKRLKQQLLVLENLAAAA AGGKDTVTTATNPSTNTAAATAAGGGGGGRQQYPRSYQMMVSFLSKHVKRYQSLEDKI DDLCTRMEESKRGGGRERHHRRRRQRRESEEDGSGDREQSAALARFLEETFQLQRYMV ATGQKLLEMQSRIAPSLERAAGNGGGNDGVDMGRFMDVVGALLRDVQRGLEVRIARII GDLEGTLTFHGILHTTF</aaseq>

Gene Sequence

<dnaseqindica>1..1222#1404..2422#2516..2896#atgtccatgtccatgtccacagctactaccactccagcagtgctccgcctgtcgacggacatggcgatgtccgagtgcgcggcgacgatgccggcgacgacggcgcaccaccaccaccaccacgccgttgcgtacttcggtctttcttgcgctctcgccgtgctgcatcgtcgctcgggtggtggtggtggtgggtgtgatcttggcgccgggccgcggcggtgccggtggtcgcggcggagagagctcgcgctgcgggagagggtcggggagctggagagggaggtggaggagctccggcggaggaggggggaggatgctagggccaacgagaaggtggccggcatattcgcggcgcacgagcagcggtggttcgcggagcggaaggggctgcggcggcaggtgcacgccgtcgtcgccgcggcgcgggcgcgggaggcggcgcacggcgaggccgtggcggagctgacgaggcagctcgaggagcaggagcagcgcgcggcggaggccgcggagcaggaagcggggcggcgggaggaggccgaggggaagctgcgtgcggcggaggaggcggcggagcgcgccgggaaggaggcccaggagcacgccgccgagctgcggaagcacagggcggcgctcgcggagctcgcgaccgcgcggcgggagctggaggcggagcttgcccgcgcggcgcggcgcggggacgcggcggaggcggagctcggggaggccctcgagcgccgcgacgaggccgcgtcgacggcggcggagctctccgcggagtgcgcgcgcctgcggcgcgacgcggagcacaaggacaagatcctctccgcgatgctgcgcaagtccaagatcgacatggaggacagggagatgctggtgcgcgaggtgaagatgtgcaaggccaggcggaagcaggcggagctggaggccgaccggtggcggaagatgtgggagtcccgccatcgccgcggttccaggtcgtcggcgaggtgcgccgccgcggcggaccaccctggctgctccgacaagctgacatcccccgacgccgccgtggcgccgtgcgcgcacgacaccaagatactcttcgtggaccgcgtcgaggacgccgacgccgccaagaaatgccggcacacggcggcgccgccgccgccgccgacgaaggatcccaccaccgtcgaatgcgtcgaccgctatcccagccacgtcgacgacaagcctggtacgtttgctctttccagcattaagtacacaaacatgtcagaattcaattccaaaagttcgatttcgttgcgttccagtaataaatgaacaccacgaacatgttcgcgaatttgatttttcgtcaagaatttgagaaacacgacacgtttttcttacgagtttgtatgatttttttgcagtggtggaggagtaccaggatttgcaggagtggttcaagatggagacggagaagtacacgagcatgatccggcgccggcacagcgcggaggtggaggcgttcacggagcagctccggctcaaggacgagaagctggaggcgttccggtggcgcgcggcgagcatggacgccgaggcgtcgcggctccggtccaggctccaggagctcgaggcgcggctgtcggagcaggagcagcgccgcgccgcgctggaggcgctgctcgtcgctagggacgacgagaaccggtcgctcatggagcggctcgccgcgtcggacgaccaggggcgtgccctcgacgtcgtcgtcgtcgacggcggcggcggcggttgcgagcatcgcgctccgcgctcgccggagggcgctgaggctgcggatgctcgtctcgcggtcgcggagatcaaatcgctcgagccggtttcgccgggtggggacacgaacaaggtgttcgacatggaagaaacagaggcgcgcgacgtcgagatctcggttcagaacgacgtgtccgccgcggtgtcgccggacgagcttcagctggtcgaacacgacgaccaccgggcgatcgcgccggcgcgaaactcgtacacatgcgagatcgaggaggaagaagacgaggagaaggaactgccctcctcctcctcctcctcctcgctcgcgctcgtggtcgcggcgccgccggagcagaggaccacggcttccaagatggacatccaagcgctcgccgtgtcgtacaagatcaagaggctgaagcagcagctgctcgtcctcgagaatctggccgccgcagcagccggaggcaaggacacggtgaccaccgcaacaaatccgtcaaccaacaccgccgccgccacagccgccggcggcggcggcggcggcaggcagcagtatccgaggagctaccagatgatggtgtccttcctgagcaagcacgtcaagaggtaccagtccctcgaggacaagatcgacgacctctgcacaagaatggtactacgtgtttgtaattgtatccaagttcttggacatcgtgttcgcgacggcggcgagcgccattgacgttctgatctcgtgctcgtgcaggaggagagcaagcgtggcggcgggcgggagcggcatcatcggcggcggcggcagcggcgggagagcgaggaggacgggagcggcgaccgggagcagagcgcggcgctggcgcggttcttggaggagacgttccagctgcagcggtacatggtggcgacggggcagaagctgctggagatgcagtccaggatcgcgccgagcctggaacgcgccgccggcaatggcggcggcaacgacggcgtggacatggggaggttcatggacgtggtgggcgcgctgctgcgggacgtgcagagggggctggaggtgcggatcgcgaggatcatcggagacctcgagggcacgctcaccttccatggcatcctccacaccaccttctga</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0550600, RefSeq:Os01g0550600