Os01g0578200

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Revision as of 04:45, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0578200| Description = Zinc finger, MYND-type domain containing protein| Version = NM_001049930.2 GI:297597060 GeneID:4323854| Length = 582...")
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Gene Name

Os01g0578200

Description

Zinc finger, MYND-type domain containing protein

Version

NM_001049930.2 GI:297597060 GeneID:4323854

Length

5829 bp

Definition

Oryza sativa Japonica Group Os01g0578200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:24021140..24026968

Sequence Coding Region

24021140..24021154,24024186..24024248,24024335..24024489,24024578..24024668,24024784..24024839
,24025645..24025762,24025852..24025935,24026024..24026212,24026903..24026968

Expression

GEO Profiles:Os01g0578200

Genome Context

<gbrowseImage1> name=NC_008394:24021140..24026968 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:24021140..24026968 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctgtcgcctctcaccggagcaccgcccttcgaagtcgtcgccggcgatgatgtcatcgctgatagccttcagatcaaccccaataaggaaacaaaccttgtcgctgtattcaagaatgactacgtagatgacgaggatgatgaggacatggatcctcaagtaaccttagggttcatagaggagccagagggaccagaggactggcatcttcttctccctcaacacttccccaataaagctggcggtgttccggcctggcttgatcctgttaatttgccatctggcaagtccaggtgctgtgacttctgtggcgaaccactacgttttgttctccaggtttatgcaccaattcagtgcaaggagacagcctatcaccgcacattatttgtgttcatgtgcccatccatggcatgcttactactagatcagcatgagcaggggaaggatagggcaggggaaaaagtttgtagtcgttgtaggaaatccagttactgttcaaagaagcatcaggaattgcattggcgtgcaaagcacaagaatgagtgccatcaaatatctggctcacataatgcttctgctattatgccagatgcaggaaaagtatttgctggcaatatatggcctgaatacatggtggttgatgaaaccgaaaaggtttcttgttttgctagttgtgagaatagatcagaattgttgatggaacaaggccaaagtgaagaggatgacatgacggcatcattgatggatcagtttgaggttgatgatgacaatagatgctgggcatcttttctagaacgcatctcaagagaacaggatcaagcatccattatgtaa</cdnaseq>

Protein Sequence

<aaseq>MLSPLTGAPPFEVVAGDDVIADSLQINPNKETNLVAVFKNDYVD DEDDEDMDPQVTLGFIEEPEGPEDWHLLLPQHFPNKAGGVPAWLDPVNLPSGKSRCCD FCGEPLRFVLQVYAPIQCKETAYHRTLFVFMCPSMACLLLDQHEQGKDRAGEKVCSRC RKSSYCSKKHQELHWRAKHKNECHQISGSHNASAIMPDAGKVFAGNIWPEYMVVDETE KVSCFASCENRSELLMEQGQSEEDDMTASLMDQFEVDDDNRCWASFLERISREQDQAS IM</aaseq>

Gene Sequence

<dnaseqindica>5815..5829#2721..2783#2480..2634#2301..2391#2130..2185#1207..1324#1034..1117#757..945#1..66#atgctgtcgcctctcaccggagcaccgcccttcgaagtcgtcgccggcgatgatgtcatcgctgatgtcagcgccatctcatcagtccaaaatcatataagcttcccttttttcaatgaaatattatttctttttaatatttgtcatctaccaaatattatctaatctatttccgaaggatgtttttacttgtgacttatatttttaaaattttttcaaaaaatgtttaaataagatggacggtcaaagttgaacgcggaaaagtgagaggtgacagtgtgacacgtggtctaatcaatactgcccatcacggccagcattagatatattgtttgattgattgatacggatgcatgctgtatgtaaaatgctgaaatctgaacttccgacttcactttaataattactccctccgtttcacaatgtaagtcattttagcatttcccacattcatattgatgttaatgaatctagatagatagaatgacttacattgtgaaaaggaggaaatagtaaagatagttaggaagaattatacctcactccaacatgaaatgctcatatcctaatttcccttcttttttttggttgctgaactaaaccctcatgctctgtgttcgcacccttttgcacctgttggagcgaaatgttttgccttttctattcagctggattggtgacactcatcccctcctgcatccatttccttgcaggcaattgctgtgaaatatggaacctgacactgacaagcttcagagccttcagatcaaccccaataaggaaacaaaccttgtcgctgtattcaagaatgactacgtagatgacgaggatgatgaggacatggatcctcaagtaaccttagggttcatagaggagccagagggaccagaggactggcatcttcttctccctcaacacttccccaataaagctggcggtgttccggtacgtacaacggtacagtctgcgttatatgtgttcttagaacgccattttgaactttcttaagtgaaaaatctattgctttcttcaggcctggcttgatcctgttaatttgccatctggcaagtccaggtgctgtgacttctgtggcgaaccactacgttttgttctccaggttgtctttcatttatatgacaaactgcaggtttatatgcaggtttatgcatataagccatcaatttgttaacaatcatttatatgcaggtttatgcaccaattcagtgcaaggagacagcctatcaccgcacattatttgtgttcatgtgcccatccatggcatgcttactactagatcagcatgagcaggggaaggatagggcaggtaatcctagaagaaggtgaagctggcataatatttttgttgttcttctacacagtgttctcacccaattctttttgggtatattctgttaacctcttctggtgagctgttgcagtgttagagttttccggtgccaacttccccaaattaattcatattattcattgaaagagcctgagggttgtattggatccatcggatcacaatgtgcagaaggtagtcttgtttgatatactttctgcttgtttggtgcttgcagtgtggtgtcctctgtatggcaattttgggacatgctcacaagaataccccttgtcactgttctatattactccctccagttttttttatatgacgttggctagttcaaatttttagaggaaactagttcaaatttatactagccaacgtcatacatatatgtatggaggtagtatttgttattgcataaatggttgttcgataaaggaaggtcagatgaattttgtgcgttaatcataagctgaattccaggaattatcaccgtctattttgtgaaactttcacaagcttgttgaaacaatcttttaaagttgtgtagaaaatgcactttttattctcacatttcctcttgaaaacactatgcttttgataattttatggacagctttacgtccaggaaacactttgctttgatatgatatattgcttaaataatccattatgcatgctgtgtataaatcatgaacacaaacttatgctttttgtcttcaaatgtttctattaggatcccaaacttggttttgttgttggtgtggcacatggaaaggggaaaaagtttgtagtcgttgtaggaaatccagttactgttcaaagaagcatcaggtatcaactaaccaggcaattatattgtattttcagtttaatcagtttgtttgcgctgctagagttttcagatatcactgttttggattaatcactcggtaatatccttcctcaggaattgcattggcgtgcaaagcacaagaatgagtgccatcaaatatctggctcacataatgcttctgctattatgccagatgcaggaaaaggtaattgcccatttatctcttaattgttcctccatgtttcataaaataaacatttctccatctaatttgttgttctaactatttgcagtatttgctggcaatatatggcctgaatacatggtggttgatgaaaccgaaaaggtttcttgttttgctagttgtgagaatagatcagaattgttgatggaacaaggccaaagtgaagaggatgacatgacggcatcattgatggatcagtttgaggtttttgttttcctgttatgctttgccatatgtttgctaatgcacttctagagtgttatttattactttttttttttgtgttgcaggttgatgatgacaatagatgctgggcatcttttctagaacgcatctcaagagaacaggatcaagttttgaggtgattttggatgccttactttgggttgttaattgttatcactttttggaatagtgtctttactttgtcagtgttttcaattctgaattaagaaactacagcaaagtcctagtgcggtagtgccttgccacaactcttattggaacttcatttaccttttaaagttgaatagatgctttgtttaattttgtggttgcatgggcttcaatactatatgggtttctgagttcagcattatgtttcttgaaattttaaaggcttaagttgtcagttccactgggaccgtttaatgtggtttgggaggtcagttgacgggaaggtatatcaacttggaaaacaaaatcaactagcgatgttttattgtactgtgggaaacttctgtgtttaataaccaattagctggaagcctggaacctagcatgtttgcacttcagcacatttgtaactccagttgtagtttgtgtctttatgcagtgaaatgtgccatcagtagcatatggtaaacttgaaataatcatattcagttccccacctctcttgcatgtctgtacttcgcagacaacttatcttaagcataattttgattacttcgttatgcagatactgcagggaatcaactgcaaaaccactttgggtagtatattctgggtctctaaccaatgcagctaagccatcttgtatatactgtaatggtccactttgctatgaatttcaggttggacaggtttcatatcttaggctattgattttactagttgaccaacaggaaaaaatataaaagacttctctctctaaaaaaacagaaaagacttgtagatgcatgtttttatggacctacattttaggaagagcatttgcatccatcctgtcatgaaaactgcatactctgaaatacttctgttagcttgttgctcctagccacccaacctgtatccagctgcagggttaggtcatatttgatgggtcacagcaaaccttgcgaacctagtcttgtgtggtctggtctctatagtaaccagagtaaatggtattcacaacttttggttagaacagtgttatcttctatgtaattcatagagttaagattacagtttacttttagccaccaagagaatattgaatttgcaaacctatgatatcattgtcccaccatttatcgcatattctcattggtattgttaagttgctgatttgcagaggcctctccattgcaaactggcaaatttctgttatttactgatgcgtgtttcaattacaaatgttatcaggtatttagctgtatgcatgtatgtttgaaatcaatttacataagataacgctaaggagctcttaacatatactgtgatttaagcacatcgtacatgccactagtaaatgaattaatcacataattgtgaacactaccataatgcaattatatcagcaagttacaacatcgtttctataccatgtggacattctagcgtggtcgtgtttcagctaattactgaccatattaagtcttaggaaaggcaaccttgtagccgaatggactgttttaaatagatttcactgattggcatactctcatacagtttgtgttgttggttacatccttccatggtttcatcgctatttccttttgtatgcagataatgccacaactgctccattacttccatgttgaaaatgaaccagactcacttgattgggcaacaataattgtttacacatgtaaagggtcctgtgatcaaaatgtcagctacatggaagaatttgtttgggttcagttatctccagcaacaactagaaccaaccaaagtacttgcccccctgctggcttgtaacttctcttcaatacatatttctgtgtgattaatccaattttccatattaataacttgcgatcaattctaaaagaaccgttgttttctatctttctcaaatatatgcaatggtagtaaatgtggcttctccaaaattcatttttgctggtgttggcccacttatttgtaactttcttgatacatatttctgtgtgcttcatctgcttttccaaattaataggtcgtgaacaattttacattatgtgtaaagaactgttgcctttttttttctcccaaagatctgtggtagcagtaaatgtaacttcacaataatgcgtttctgctgctgttgtgttacctgggtggttggcaaaactagtattgcctttagctgtcaatgaaatgtgctcacgctagctttctgtttggaagatttattaggcgcgttaatcgtatgatcttctgcagatgattgtacactacacatgtttatatgcaagtggctggttggtctgatgcaaatcatgtattcgagttttaagattttgttcaagtttacaaattatggtgtaggttattgaattccattgcagcatgctggcatttagttcaaaagaatatatggagaattggagatcacattgtgcccctgaacccgtccgttttataaaaaaatgtaaaaatggtgttacaacacttccagcaaaatctgcacatatgttttgtccaagaaaacacagtcatgcatttatactgcaagcatgctatttacattattattgttcatgaaaccttacagatgtttctttctgagagtttacaaacgtagttctgacttgcaggtaaccgactcccttaaccactgaaaaccttcgaagggttattcgctcggagcagtcggagctatagatgcatgagggtttatcatgattatcatagtgaaatctatcaagtctaattttgagttctgatggtgttgctacttctattgcattgtcggaaggcggttgtctggatggacacagcaagttgtgtttttttgtctgctattctcacaaatccattccgcgctagcagttcaatacccaaaacaaagaatttacagcaaatggttctactttcggtagaaatttcatatccctaatggagttacaaggcttattactcgggaaactcaaaacttcatggtgctgttttgcttttattggtgctctgaaggcatccattatgtaa</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0578200, RefSeq:Os01g0578200