Os01g0711000

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Revision as of 04:56, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0711000| Description = Similar to Vacuolar ATP synthase subunit B isoform 2 (EC 3.6.3.14) (V-ATPase B subunit 2) (Vacuolar proton pump B subu...")
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Gene Name

Os01g0711000

Description

Similar to Vacuolar ATP synthase subunit B isoform 2 (EC 3.6.3.14) (V-ATPase B subunit 2) (Vacuolar proton pump B subunit 2)

Version

NM_001050578.1 GI:115439526 GeneID:4327833

Length

5684 bp

Definition

Oryza sativa Japonica Group Os01g0711000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:31292571..31298254

Sequence Coding Region

31293657..31293714,31293835..31293890,31293995..31294093,31294577..31294636,31294873..31294984
,31295074..31295282,31295680..31295808,31295913..31296050,31296631..31296781
,31296982..31297064,31297246..31297293,31297416..31297469,31297559..31297642
,31297740..31297925

Expression

GEO Profiles:Os01g0711000

Genome Context

<gbrowseImage1> name=NC_008394:31292571..31298254 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:31292571..31298254 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggttgttgcaaatggtaatgtcgacacggaggaaggaactcttgagattgggatggagtacaggacagtctctggagttgctggtcctctagtcattcttgataaagtgaagggtcctaaataccaagaaattgtcaatatacgattaggagatggcacaactaggcgtggtcaagtgcttgaagtcgatggggagaaagctgttgttcaggttttcgaaggaacatctggtattgacaacaaatacacaactgtacaattcaccggtgaggttctaaaaactccagtgtcactggatatgcttggacgtgtcttcaatggttctgggaaacctatagataatggcccaccgattttaccagaggcttacttggatatttctggaagttctatcaatcccagtgaacgaacataccctgaagaaatgattcagactgggatatctacaattgatgttatgaattctattgcccgtggtcagaagatccctctgttttccgctgctggtctcccacacaatgaaattgctgctcagatttgccgtcaggctggtctggtaaagcgtttagagaagagtgacaatatcttggagagttccgaggatgaaaattttgcgattgtctttgctgctatgggagtaaacatggagacagcacaatttttcaagcgtgattttgaggaaaatggttcaatggagagagttaccttatttcttaatctggcaaatgatccaactatcgagcgtattatcaccccaagaattgctctcaccacagcagaatacttggcatatgagtgcgggaagcatgttcttgtcatcctgactgacatgagctcatatgccgatgcacttcgtgaagtttctgcagctcgagaggaagtacctggacggcgtggttatcctggttatatgtatactgatttggcaactatctatgagcgtgctggtcgcatagaaggaagaaaaggatcaattacgcagatacccattttaaccatgcctaatgatgatattacacatccaactcctgatcttactggttatatcactgagggacagatctacattgacaggcaactacataatcgacagatctatccaccgattaatgtccttccttcactctcccggctcatgaagagtgctattggtgaaggcatgactcgcagggatcattctgatgtctcgaaccagctgtatgccaattacgccataggcaaggacgtacaggcgatgaaggcagtggttggagaggaagcgctgtcatcagaggacctgctgtacctcgagtttcttgacaagttcgagcggaagttcgtgacacaaggagcatatgacacacgcaacatcttccagtcgcttgacctcgcctggtcactactgcgcatctttccccgagagctgcttcaccgtataccagcgaaaacccttgaccagtattatagccgtgatgcctcccactga</cdnaseq>

Protein Sequence

<aaseq>MVVANGNVDTEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQE IVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDML GRVFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARG QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNILESSEDENFAIVFAAMGVNMET AQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILT DMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTM PNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRD HSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRN IFQSLDLAWSLLRIFPRELLHRIPAKTLDQYYSRDASH</aaseq>

Gene Sequence

<dnaseqindica>1087..1144#1265..1320#1425..1523#2007..2066#2303..2414#2504..2712#3110..3238#3343..3480#4061..4211#4412..4494#4676..4723#4846..4899#4989..5072#5170..5355#gccttcttcgctgggggtggggcgacgaaacttgcgcgatctcccctctcctctcctccgctcgaatctgcggtacgcacgcctccctcctcctcctcctcctcctcctcactccttccggccccgatcctatagctcctccgctcgccgcggggatctgcttacgacgaggcccggcacccccgccgccgccggatcgtggtttggcgcttcagacccgtgcgtagcgtgtaggatcaattggcgctccacgttccccgatgttgccgaattttcagagtttgttgggtagattgacccccgctacctccactgtggaggtatgcagagctgcccgtgcgaggagatggggtttgtcgattagtgttctgtcgagagcgctaggactaggatcttcgtagtgttgttgtttaagaagtgagatacagtacaaagctcgtttctgcctcagttcttctagggagcttacatgtaatgatcaatgtgtctgaaacatgattttttttttcagagatgtagggttggtttttggactagaaagggttctggtgaagtacatatgattcgattggcgatgttctatcactgccttttatgtttttactgcttactagaatagtagctcatggagctagatccttctagtatttccagaaaattggaacaacataatctttctagagttaatcttttgctaattcgaatagcaggatagtgtttgcctatttggcatatctactaactatacatttcaccttgtagttgatatcagctttagctttgtcagcatctgattgattttagattggcaaagtatctggcctttgttgctggtaatttaggaaatatagaagtgacagttaatgccatgaatttgttgttttaatttctaatctaaatcgcaaaactaaaagagaagataagtatgcggccagtgaagaaagggtttaatggtgatgcataccccatttatctagggaacttgagaaaacagatacacgacagattgtccatagaatattcttctgagtatattttattgactcaaatacttacctacagcaggcttcttctacaatctcaaacatggttgttgcaaatggtaatgtcgacacggaggaaggaactcttgagattgggatgggtacggatcttctgcttgattcacaataaccatatatggactgagtctagcttgtaagtagcctagtattgatattgttgaactactcacactttgtaagtttttcttttaaaaatgcagagtacaggacagtctctggagttgctggtcctctagtcattcttgataaagtgaaggtaatcatatcttgtgatggctatttcatattgttttacatgcaaatataattttgattatttcagatcacattcacattccatataatgtgttggtatttcagggtcctaaataccaagaaattgtcaatatacgattaggagatggcacaactaggcgtggtcaagtgcttgaagtcgatggggagaaagctgttgttcaggtatgtacatatttgtttcacagtggcaataaataattaagatagcatgcattcttttaacatgttgccaattcattcgtgtggttatattgttattaaaaaaagttgattccttcttcatcacttattaatataactgtttttcaaaattctattagtatattatgacaatttgattggaaagcagatggtgtacattgtttatgcaatcttttaagcattttacagataattagctgaattgcctgtattttgtcagaaccatcttagatggcagtgatacaagtatgactaacacaaatattaagtttacaatttttatatttcttatggtagtataagcatcaccgagcagtggtctttacttttgtcttcaggttgcctcaaacttttgagagtaatgtgaacgtcagtctagatgttattgtgcagttgttacctacctgtctctttcactcatgaaacttttgaaatcactggcaggttttcgaaggaacatctggtattgacaacaaatacacaactgtacaattcaccggtgaggtaatattctttttccccgtgaatttgtgctaatatgtagtggcactgtttaaaatagtgacccggatctctggcattcactaaataaagttgtcaatccttggattagaaaccggctggcccccccaccattagccattggcttgttcccacatacagtgttttagtcattgaaattttcgaagtggttcactcttaattttgttcattctactttcctcgtgaacttttttcaggttctaaaaactccagtgtcactggatatgcttggacgtgtcttcaatggttctgggaaacctatagataatggcccaccgattttaccagaggcttacttggatatttctggtaggtgctagctgcttttgattattcataagatttgattatggtgtaaatcaaatgcttagattttgacatcgggtttgctggtgcaggaagttctatcaatcccagtgaacgaacataccctgaagaaatgattcagactgggatatctacaattgatgttatgaattctattgcccgtggtcagaagatccctctgttttccgctgctggtctcccacacaatgaaattgctgctcagatttgccgtcaggctggtctggtaaagcgtttagagaagagtgacaatatcttggaggtatttttgtctaaactacataatattcatcatacctaactggagtaccatttccatgttgcattctgggtactgtagcaagctataggcattacttcttacttagttcttgcagtaagtagccatagataattgacaataagcttgtgatctttgtttctaatttataagaagtgactaaatatatttgatgcatacttagtttgtcctacatggtgaagctaaccgtgttatggataagtagtcataaatatgtaacactagctacaaaaagattgttatcagtcattgcaatttagtgcagttttctattctgttattgctgtatgctgaataacattttgacattcacacttcttccttaatattatctatctaatataacaatttattatagagttccgaggatgaaaattttgcgattgtctttgctgctatgggagtaaacatggagacagcacaatttttcaagcgtgattttgaggaaaatggttcaatggagagagttaccttatttcttaatctggtatatctgcattacctttgttctttcttttccttcactatgctgctctaaggaatttgcaagatctataacttactccttgattttgtattttttgttcataggcaaatgatccaactatcgagcgtattatcaccccaagaattgctctcaccacagcagaatacttggcatatgagtgcgggaagcatgttcttgtcatcctgactgacatgagctcatatgccgatgcacttcgtgaagtaagggcctttatcttgctatatgttatttcctagtgtttacattagaaacatggtgggaattctctgctatcactttgagctaaaatggacgttttgaaagatgataattctgaaaaatgttgtcttgccttacctgtttgaagggggaaaacgagcacaacataggtttatacagagaacctagatggttagatctaaagcaagttatgatctgttgtttgttgtgctctagactattttgtctgtcatcgatgagacgatgatcggtagctaggtatcgtataattacattaacacagatacagagttattctattcactattgcaggtctgcagctatactagttatatgcttctcgttgtaaatttagattcagaaatattggtttgagctaatttgaataactaaataatattgtatcgaataaatgctttaatattgtttttctacatatgcttgctccttttttttttttgaaatctagtccttttaataccacggtttatgctgatttcttaagtattatatcattcaagtcacctctacttaccttttctctgtctttcctcacatcaggtttctgcagctcgagaggaagtacctggacggcgtggttatcctggttatatgtatactgatttggcaactatctatgagcgtgctggtcgcatagaaggaagaaaaggatcaattacgcagatacccattttaaccatgcctaatgatggttagttatttaaatgtgcttacattttatgataaatctttttgcgaaattgcacttttcctttttttaatttgaagtatgtatgttaattgcacagaaaaacatagtgaatcagttttattaatagaataaatgttacatggataactgatattagatgctgccggcaactttctgactcataagtcgtgctgttgtagatattacacatccaactcctgatcttactggttatatcactgagggacagatctacattgacaggcaactacataatcgacaggtattccacatttccacagtttcctgctaaactttgtttgatgacttctaaaccgaaaatttggattcctgattacgacaaaagaataagataagacttaattagctatttatagtaaaagcataaatagttggcatataaaaagttctctctgatcttattgctgatttcaatttggcagatctatccaccgattaatgtccttccttcactctcccggctcatgaaggtaaggtttttggcaataaagaaagctgccgcactctacatcctactttagagttttgcagggactgacatcgtcaatataaggttgataatttgcttataacttgaccggatctcttgcagagtgctattggtgaaggcatgactcgcagggatcattctgatgtctcgaaccaggtcggttgggcgttcatagcctatgttctgcacaaactaccttaaccaagtatatatatggagtatttactcggatgtgtttgtttcagctgtatgccaattacgccataggcaaggacgtacaggcgatgaaggcagtggttggagaggaagcgctgtcatcagaggacctggtaaccctcatgcatgacctgacattgttattcttaaactccttaattattttaagttttaacctcctaatcaactgatctatgaaaaaaatgacagctgtacctcgagtttcttgacaagttcgagcggaagttcgtgacacaaggagcatatgacacacgcaacatcttccagtcgcttgacctcgcctggtcactactgcgcatctttccccgagagctgcttcaccgtataccagcgaaaacccttgaccagtattatagccgtgatgcctcccactgatctgcaaagggtcgtgtgtaataagaaaaaaaaccatcccggactcccacttcttctctttcatttttgccaccaatgcattcattattttttgtgtaaaaaacacgaattatctagtgatgtgggcttccatcattgttgtcccaagcacaccatgtatcatatttatcttcttttttggaagaaaatgtattattttcttgccgtggaaaaatgaataagtgaggacgagtgagctagggatttggttaatgtaagaacacaatgaaataagccatttgcctcatggttttcgcctgtcaattgagtttcagaccctcttggcttcg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0711000, RefSeq:Os01g0711000