Os01g0717700

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Revision as of 04:57, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0717700| Description = EGF-like, alliinase domain containing protein| Version = NM_001050610.1 GI:115439590 GeneID:4325589| Length = 4421 b...")
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Gene Name

Os01g0717700

Description

EGF-like, alliinase domain containing protein

Version

NM_001050610.1 GI:115439590 GeneID:4325589

Length

4421 bp

Definition

Oryza sativa Japonica Group Os01g0717700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:31649874..31654294

Sequence Coding Region

31649931..31650274,31652553..31652853,31652973..31653265,31653371..31653657,31653759..31653988

Expression

GEO Profiles:Os01g0717700

Genome Context

<gbrowseImage1> name=NC_008394:31649874..31654294 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:31649874..31654294 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagacgggacggcataggtcacagagcctgggatctgcagggctcgcgttccacgcactcctctgctcgtcgttgctgctcaacgccgtcttcttcgcgcaccacctcctcaggtcctcgccgacggcaacgccggagcggctcggcgacgggctgagctgggcgctgcaggcggccagggaggccgaggccgtggccgccgccgactgctccggccacggcaacgtgttcctggatggcgtcaccggcgaggatgggcggcccgggtgcgagtgcaaccgctgcttctccgggccggactgctccgtccggacgcccaactgcaccgccgacgccgacagcgggaacccgttgttcctggagccgtactggagacggcacgcggcagccagcgccgtggtgttctccgggtggcaccgcttgagctacatcaccaccggcggccgcttccattccgtcgagctcgatcgccacatccggctgctgcacagggccgtcggcaacgcggtcgtcgacgacaagtacttggtcttcggggccggctccatgcagctcatcaacgcgttggtgtacgcgctctcccccgacggcaacgccgactcgccgccggcaagcgtcgtcgccaccgtgccgtattacccggcgtacaagtcacaaaccgacatgtttgacggccgggagtacagatgggacggcaccaccgctacgtggtcaaacaacggctcgcgaaactccaccaaaggcttcatcgagttcgtcacctcgccgaacaaccccgacaccgcgttgcgcaagcccgtcctcgccggctcgtcggcgatcgtcgaccacgcgtactactggcctcacctgacgcacatcccggcgcccgccgacgaggacgtcatgctcttcaccgcttccaagctctccggccacgccggcagcagattcggatgggcgctgataagggacgagaaggtggcgaaaagagcactttcgtacgtagagcagagcatcatgggcgcgtcccgggacacccagctccggatgctgaagatcctaaaggtgatactggccaacctgcacggcaaggaggacatcttcgccttcggctatgacgtgatgaggagccgatggcgaaggctcaacgccgtcgtgtcgcggtccacccggatctcgctgcagaagataccgccccagtactgcacttacttcaaccggatcaaagagccatcgccagcctacgcgtgggtgaaatgcgagtgggaggaagacgtcgactgctacgagacgctgctggcggcggggatcatctcgcggtccggcactttatccgaggccgaagctcggtacacgcggatgagcctcctcaaggcgcaggacgacttcgacgtgctcctggagaggatcaccgaattcgtcgatgccgaggagcacggcagagctcccggtggctccagctccatgtga</cdnaseq>

Protein Sequence

<aaseq>METGRHRSQSLGSAGLAFHALLCSSLLLNAVFFAHHLLRSSPTA TPERLGDGLSWALQAAREAEAVAAADCSGHGNVFLDGVTGEDGRPGCECNRCFSGPDC SVRTPNCTADADSGNPLFLEPYWRRHAAASAVVFSGWHRLSYITTGGRFHSVELDRHI RLLHRAVGNAVVDDKYLVFGAGSMQLINALVYALSPDGNADSPPASVVATVPYYPAYK SQTDMFDGREYRWDGTTATWSNNGSRNSTKGFIEFVTSPNNPDTALRKPVLAGSSAIV DHAYYWPHLTHIPAPADEDVMLFTASKLSGHAGSRFGWALIRDEKVAKRALSYVEQSI MGASRDTQLRMLKILKVILANLHGKEDIFAFGYDVMRSRWRRLNAVVSRSTRISLQKI PPQYCTYFNRIKEPSPAYAWVKCEWEEDVDCYETLLAAGIISRSGTLSEAEARYTRMS LLKAQDDFDVLLERITEFVDAEEHGRAPGGSSSM</aaseq>

Gene Sequence

<dnaseqindica>58..401#2680..2980#3100..3392#3498..3784#3886..4115#gcagtggcccagtggccgacggtgaggtcattggagacaccccgagacaggaaagcaatggagacgggacggcataggtcacagagcctgggatctgcagggctcgcgttccacgcactcctctgctcgtcgttgctgctcaacgccgtcttcttcgcgcaccacctcctcaggtcctcgccgacggcaacgccggagcggctcggcgacgggctgagctgggcgctgcaggcggccagggaggccgaggccgtggccgccgccgactgctccggccacggcaacgtgttcctggatggcgtcaccggcgaggatgggcggcccgggtgcgagtgcaaccgctgcttctccgggccggactgctccgtccggacgcccaactgcaccgccgacgccgacaggtaactaatttggctctcgtgttcttcagatcttcttggccggtgccttggcttggctactgcacacgtacgttggcacatggcgatggctgccgaataggattaattatcaatcatcttgctccgagcctccgagtgttcagggcttcaggcgccatggcaaggggcgcatccgcggccggcggatattcttgtccatgcggaaccggttattttatccctttggcatcccacgatttgttattaaatctcaaatatcatcaataagatagttcaatatatagatgaaatagttgtaaaaaaaaatctgaaaatctttatacgctagccgcctattataccataaaattgtaattccaaacttggtttacatattgaaaagggaaaaaaaaaaccatccttacaaacagaaattgtatgtagtgtctgcgctatttatagtcataattgttcctcatttcaacttgaatctaagctccaaccccagctgcagtaaccactaccagtgcacctctgtttgatagttccactatttattgcatactagttctataaaaaaataggtactcccaaagtttaagttaatgttattgcccaaattaatgtccttgcaagaggtgtttcttgccccaacaatttcacatgaaacatatctaaccatcctgtcaccacaataattaatactacagtctttacctattataataattaaagagttttctgtactcatgcctcttcatccgtcgctccttgagtcctgatctattttatttgtttcttccgttttggtacataatcctgtttatgattcctctaatcaccccgtatcctgattcctagcgactactgattccaatactgttcgcatctctgcatacatgatcccgcttctaaaactgacggtgagtggaagccaatactgttcgcaacaaaagcaatcaacagaatcatgtattttgtggccctgtgttaccgaaccaaactccaaagaaaaatattagaaacagaacgtcagcttatcaaggccacaaagtacacgaggagaagacgagcacaagaaattaagtcataacaacccaataaaatcaactagaaaaaatgtttccaactaaaaagaaccatcggaaattttaactagatatttttcatgatatggtatcagttttgaaccaaagtgggttataatttcgtgtcattattttccctattataagtgatgtgacaatttaggattttttttttatcatgaagcttaaactaacaatttccgtgatcgggtgatggatgtacacaagtcggcgtcacaatcagttgtgaccgaatattaattattcatgcatggtggcataatttcaaattagtatattttctgttgcaacgtacaaatattttttaagtaatagtttaaattaatcttccagcccaaattaatcttcttccatgactacttctagttctagaagtaggattttacgtcatcgctggaaaatatcgagagatcaggttaattttttttttgtttgtctctgcggtctagcattatacaggtcgagtcaaaacaatcgttgcccacacatgtggctgggccgtatctaaacaaggactaaatgtcaatatttgggccgtacaaacctggctcaagtaaaatctgttttaacctgggtcttaccggaaatactgacagaccagcccaatatatcagttttaactggcgcgtgtgagattaagaacatccacaatatataatttacttaaggatcctaaactctaccacatatgcatactaatggaacacacattgaaacatattgctatcacgtatgaaacactaaattttaacaggttgaaatatatatttttttattagaatatacataatcatgtgatatcttgttgtaaaaatttaattacgaagaatacaactcggattatagatcagataagtagtttaaaataaaaattatttaagatgggaacgagggaggaagatgtagcagtagcagcgccgcatttttatttttcttgtctaaccgggcgcgtgtactagtattctcctggtatttgactcgagatcatttcccctctctcctttaggtgtatctatgcaaaaggtccatacaatgtgtagagtcggtcttttattcttctctctggtttggggcccccacattgcaaatgctcaaatgagctatcattccgtacagaatgtgtagcacagccgctggtacgtagcacggcacgtactccctaacactaatcctgcaatggttttgtgcagcgggaacccgttgttcctggagccgtactggagacggcacgcggcagccagcgccgtggtgttctccgggtggcaccgcttgagctacatcaccaccggcggccgcttccattccgtcgagctcgatcgccacatccggctgctgcacagggccgtcggcaacgcggtcgtcgacgacaagtacttggtcttcggggccggctccatgcagctcatcaacgcgttggtgtacgcgctctcccccgacggcaacgccgactcgccgccggcaagcgtcgtcgccaccgtgccgtattacccggtccgtgattccaaacaccaccacacgctgacaacctgcatgcgaaccatgccattgacgatgatctcagttaattaagtcgtgctgaagtgaactgctttgatcgatgatatgtgtaggcgtacaagtcacaaaccgacatgtttgacggccgggagtacagatgggacggcaccaccgctacgtggtcaaacaacggctcgcgaaactccaccaaaggcttcatcgagttcgtcacctcgccgaacaaccccgacaccgcgttgcgcaagcccgtcctcgccggctcgtcggcgatcgtcgaccacgcgtactactggcctcacctgacgcacatcccggcgcccgccgacgaggacgtcatgctcttcaccgcttccaagctctccggccacgccggcagcagattcgggtacacgccctcaaattaagcctgacattgcaagcgacacgtgaacacaacgacgcaaaaacttgtacactacatatacgtcataccgtgctgtgcgttgcgcagatgggcgctgataagggacgagaaggtggcgaaaagagcactttcgtacgtagagcagagcatcatgggcgcgtcccgggacacccagctccggatgctgaagatcctaaaggtgatactggccaacctgcacggcaaggaggacatcttcgccttcggctatgacgtgatgaggagccgatggcgaaggctcaacgccgtcgtgtcgcggtccacccggatctcgctgcagaagataccgccccagtactgcacttacttcaaccggatcaaagagccatcgccaggtgatcagtttgtctcgctcgctaacactcaaaatcaatttctgtcaaccaaaatctttgtgctcatgtgttggcttgtttggtctccccctgatgggcagcctacgcgtgggtgaaatgcgagtgggaggaagacgtcgactgctacgagacgctgctggcggcggggatcatctcgcggtccggcactttatccgaggccgaagctcggtacacgcggatgagcctcctcaaggcgcaggacgacttcgacgtgctcctggagaggatcaccgaattcgtcgatgccgaggagcacggcagagctcccggtggctccagctccatgtgagaaatcgtgaattgagagggtgccaagcttcgtctagctggcttcgatgggcgctgtgccggaacgatcagctctactatctgattgttcttgggtaagttcatgggtacaataatcaaggggaatgatcagctagacgttgattgttccccgtcaatatttggacgaacaggtagatattgatttgtgtgtattgacgaatgatgtagatatacacaagcaattatgtgtttcagtgatcaacaattgaatatgtaattaaatgaatatcatacatgttacatttactacttaaggcagaacact</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0717700, RefSeq:Os01g0717700