Os01g0739400

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Revision as of 04:59, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0739400| Description = Protein of unknown function UPF0054 family protein| Version = NM_001050731.2 GI:297597587 GeneID:4327201| Length = 6...")
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Gene Name

Os01g0739400

Description

Protein of unknown function UPF0054 family protein

Version

NM_001050731.2 GI:297597587 GeneID:4327201

Length

6264 bp

Definition

Oryza sativa Japonica Group Os01g0739400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:32634850..32641113

Sequence Coding Region

32634938..32635324,32635976..32636227,32636311..32636427

Expression

GEO Profiles:Os01g0739400

Genome Context

<gbrowseImage1> name=NC_008394:32634850..32641113 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:32634850..32641113 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcacggatcgtgtcgcgcgccctcccgttcgcctcgcgctcgccgcagctcggcgcggcgctgatacgctcggcgccgatgcgctgcccgcccctccccgccgcggcgcccaccgcctcgctgctctcctggcgcgggttcacgccctcctcagagccctcgcgctcggcgccgccgccaccgccgctgccgatgccgcccttcgcggggttcctcgccggcatccgaagcttccgcaggggtaggcgcggccagtcggcggcgaggcgtgcgcagccccaggaccccatcccttcaccccctcccgcgccgaaggagagcgagatcgagctctacgcgcgaatcggcatcgacgatgacacgcccgaagaccccgaagtgctgaacattgtagaaattctaaaattaaatgttccgatggcgatgaaaattgcactagatgggcttctggattccaactacaaaacacgagacacttcaataagtgatgtcgggaggtatgataaggttgaagtttctgtgttgctatgcaatgacaacttcatccagaaccttaacaaagaatggagaggtgaagacagctgtattgaaatgctctcaatgtcacaatacattcctgatcttgatgttcctattctaatgttaggtgatattgtaatctcagttgagacagctgcaaggcaggctgaggagcgaggtcatacacttcttgatgaagtgcggatactagcggtatgctcacttgcttattga</cdnaseq>

Protein Sequence

<aaseq>MARIVSRALPFASRSPQLGAALIRSAPMRCPPLPAAAPTASLLS WRGFTPSSEPSRSAPPPPPLPMPPFAGFLAGIRSFRRGRRGQSAARRAQPQDPIPSPP PAPKESEIELYARIGIDDDTPEDPEVLNIVEILKLNVPMAMKIALDGLLDSNYKTRDT SISDVGRYDKVEVSVLLCNDNFIQNLNKEWRGEDSCIEMLSMSQYIPDLDVPILMLGD IVISVETAARQAEERGHTLLDEVRILAVCSLAY</aaseq>

Gene Sequence

<dnaseqindica>89..475#1127..1378#1462..1578#tccgcccaaccccattccttctcacccactctcttctcccgccgccgccgccggaggaggcggctcctcgtcgtcggcctcgacgaccatggcacggatcgtgtcgcgcgccctcccgttcgcctcgcgctcgccgcagctcggcgcggcgctgatacgctcggcgccgatgcgctgcccgcccctccccgccgcggcgcccaccgcctcgctgctctcctggcgcgggttcacgccctcctcagagccctcgcgctcggcgccgccgccaccgccgctgccgatgccgcccttcgcggggttcctcgccggcatccgaagcttccgcaggggtaggcgcggccagtcggcggcgaggcgtgcgcagccccaggaccccatcccttcaccccctcccgcgccgaaggagagcgagatcgagctctacgcgcgaatcggcatcgacgatgacacgcccgaagaccccgaagtgctggtacgtacgctactcgtggaacttctgtgccaataatatgtggctgttttagatgaagtcaccggaatcacagattgaaatgttcacaagctatagcgcggcattctctggtttactggatgatttatgctcaatcgttgttgtactatttctaatcaatgtagaaagtcctgacttttactcttgtgatttctgctccagtccttgtatgctaatttatggttagcatatcgtaactgttgtcccgaattggttgtgtttgccattcgctaaaacgaattgcacccttcaggcagctgagcatacactttctttgatctagaggtaaacaagtgggcaatgtagtcagaaatcttcgtttcaaaggaagaaaggtagtcagaacctaagttagcaggtattttattatgacgtgatgcagttttgaaattggtttaggcttaggcatttgggtatcggattatgtcgttttgttgtttgattttattcatcaagttatagtggaattccttggttgattttggtttagtagtttatatccctccgagcaatctgttgcatattttgccaataaaatggtgtgctagaaatgttgcattttcaatttgtgacgttttttgtttacttatgcttctggtaatgtgaatgcagaacattgtagaaattctaaaattaaatgttccgatggcgatgaaaattgcactagatgggcttctggattccaactacaaaacacgagacacttcaataagtgatgtcgggaggtatgataaggttgaagtttctgtgttgctatgcaatgacaacttcatccagaaccttaacaaagaatggagaggtgaagacagctgtattgaaatgctctcaatgtcacaatacattcctgatcttgatgttcctattgtaaggaaaaaaaatcctttatttgaatgctgttcttttagacatgccatcttgttgtattttctgaatttattttctcgcagctaatgttaggtgatattgtaatctcagttgagacagctgcaaggcaggctgaggagcgaggtcatacacttcttgatgaagtgcggatactagcggtatgctcacttgcttattgactgtcattagccccctaccgtttagaggtttgaatacacatgttatctttttcttggtgaatatccaacttccttttaccaaatcacttaatcctatgttattctacacatactaaaacacagataatatggtacaaaattgactgtttacttactctgtattaggttcgtggaattctacgtcttctgggttttgatcaccaaacaagtcatgagtctgcagttgaaatggagaaggaggagcagctcattttgaagagtctaaggtggaaagggaaaaatcttgctaagagtgttcttgattcgggcaagcgtcatacagaaacatcggatggtgtgcttttttgagatttctgtagttataatcctttccattattttgatcttgaaaaggtgctttcacacacatgatgataatgtagctattgctgcctaagaatgtttacagggcaagtgacaagtggtctaaaaagagctggaagcctaagattttatagaccaaaattcaaatatatcttctgtgatatggatggtatatcatttgctctttgcatatatcactactctagacatgtgtttatatttaccagtgatattttttaatttaaaaaggtacactgctcaacagtaaaagtcaagttacagcaaggaatgcagaagctctgagggaagcaaggtcaaggggagtaaacatagttattgccacagggaaggtactacaagttcttcatttctgtaataacttaactgtcccttgccagcccaggccagatcttctggatcaccctgtttccaccattgctgcatccttttccaagccaagccagattcaagtctcaattataaaacttgcattacgctaatcttggtagaatatgttaataaaaatcctctatgaggacacttgatgtttattgttttcattttatgagctgaaaggaaaaaattactacaagtagacaatcaagaataccctctgttctgccagcctatttacgtttggccctgtcatatttcagtaactcaaaatgctgataattgtttctcatacatgttcattttggaaataggcacggccggctgtcattgatgctctcaatatggttgacttgtctggaagaactggaattgtctcagaatcatctcctggcatatttcttcaggttggtggaaagtattcatggacaacacaatatttcaagaaataactttaggatacagtggtgaaaatgcggcatctttacacttcctggtagcatataatctaataggttgcaaatatgctaatggagatccttgtatcatatttttgactgaagagtgcatgccacttgcattgtgacctttatggcaccgtacttaaatctgtgtaaaatgaacaaaattattgaatgttttttcttttactcttaatttacgcccttttttcttgaattgagttaaagcgtgaaatttggttaagtgacagggcaatcattcttacccccctgcattttaatatctgttgaatgcatgttgcttgcaatacatccttttggtgccctaaataaacttttgatgaaatgaaatatagttgaaggtttatttccttttgcattttaattctttgcctttttcttgtatttgttgagtgaagtgcaaatgttagtcatgagataagtcaattattcttacctccctggtttcaaaagctggctatactgtgttcatagaacagaaaggccgctgctgatgttgcctgtgcagccttgctaattcgaagcttacattctacattttatggaaaagaacaaaaaaaagcatgacagcatcctttgatcaggccctagtggtctgtgcttctgctcagtcctataatgtgctaccctaagtcaatgttaccttgtattcagtatattaatatgcgctatgcctttattttccgagctcagtcaatattaccttgtaacatcctttgatcaggccctggtggtctgtgcttctgctcagtcctataatgtgctaccctaagtcaatgttaccttgtattctgtaatattaatatgtgctatgcctttattttccgagctcactgtttcaagactaccgcgttgttcctatccagtagataagtgaaacagtttattgttcatgtgtgcatgattcccattctcatcagattgatgctttcatctgtagggcctcttggtttatggtttgcaaggaagagaaatttataaaaggaatttagatcaagaagtatgcagagaggtaagctacatttttcttccttataggcattgagaccataaatgtgcatacaagaataatttagatccaaaaggctacactttcagggtttgcctacttaatgatatatcacctgggatgtatctctccagctaatggactaatttagatgccctcttatgtccatttaatatatagatgttagctggacaatgtagagtctatctttctactccatccgttccaacatataagaatttctgcgtgttttccaaaatgaatctggtgggagggatgcccggatacattttgaaaaactcgcagaaatgcttatattttggaatggaggtagtaatagataattttattatcttagtatccatcattaccaatttaagttagcgcttgcactgtgtagtgacactattggcttattgcaggcattgttatattctttggagcagaaggtaccattagtagcatttagccaggaccgatgcttctctatgtatgatgatcctttggttgattctctccattatgtgtatcatgaacctaaggtgtttgctggtccttggtcaagtaaattttagctgtcatattcctattaatttgactgtagttgtgactcttgttgcaggctgaaatagtctcgtctattgatcagcttttaggaacagctgagatacaggttctgtgctctcttaacaatttttagaacactttcatgattagttcagcatgaatcattttaatgttcctttgcttaaatactaagagcatccgtctagatgacattctggttggtgattcattttctcaaaatttgttccaagtggttggttcataaaataagaaactactggtttagttactataaaaatacgggctttcttttggacagggtgggggagggggtgtcctagtcctaccatgtattttacttaaccataaaataaattaggttaatatatcttatacaattggaaccctttaaatgcagttattactcttctcataaaaccacatcgtctcgattgtttctagcctttggatgattgatctaaggtgcagactacacagagcaataaagcgagtcttctagctacaaactataaatccaccttgcatctcatgtctatcgtttcgtcatgcacgtttctggcagcaatgttgtatattacaatctcaaccatttggataatcaaagattaatgttcattgaagcaacttgaaggcaaaaagatctgcttcgcttaattactcaatagatgtgcaaggcttatagaaatgcgcaaacagccactatatgaaccacttccaattgaataacaaattgtgatttgtgctgctgtcaacggcttccgtgatcgaatgccactagtcaatttctcaatatgaaattcgtaatagaaaccaatttatgcaacaaacaagttgctcattttgactgtggctgacattttcatatatggggattactctattagcaatttgacgatgctaagatgtgtagctgtctagctgactgcattataattttcatgttcagaaagtgctcttccttgaaactcctgagggaatttcttctgcattgaggccattctgggaaaaggcaatagaaggaagggcccgtgtggttcaagcacagcctgatatgcttgaacttgtacctcctgcaacttcaaaaggcaatggggtgaagattcttttggaccacctttgcattagtccggatgaggtattagtactttagttctctattacatcttattgcatgacggaatacaattgatgtcatcacctatctagttctttcaattatgaaaaaccgtcatttaaatcttggtcatacatatgccacaaaataaaatatttgaagtctgcactgagttttccaaaccaattgcccagtgatctagcggtataagtagatttaaaatggatattagacctctgatcttccatcaaaccattgaaagcccacctgcaatccttctaacttcaactttatttttttcttttgcaaggtaatggctatcggggatggagaaaatgacatagaaatgctacagctagcatcattgggtgttgcgcttgcaaatgggtctgagaaaaccaaagcagtggcaaatataattggtgccactaatgatgaagatggagtcgcacaggctatttacgactatgctttctaacagctgctaactctaaggcgtattgggataggattatctactctttggttctccccagtgccctggattcaccatataacaagacttgatcaccatctatccacaagataatactgggatgtgatctgaagccctgttggagtcaaaacattttgaactattaggcttcggttcattttttggtttggcaaacattcatgaccagccatgctacaatttgtgtgtctggaatatttatagaattgaattccttttgttt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0739400, RefSeq:Os01g0739400