Os01g0785900

From RiceWiki
Revision as of 05:04, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0785900| Description = Zinc finger, C2H2-type domain containing protein| Version = NM_001051006.1 GI:115440382 GeneID:4327046| Length = 229...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0785900

Description

Zinc finger, C2H2-type domain containing protein

Version

NM_001051006.1 GI:115440382 GeneID:4327046

Length

2299 bp

Definition

Oryza sativa Japonica Group Os01g0785900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:35085483..35087781

Sequence Coding Region

35085539..35086194,35086801..35087602

Expression

GEO Profiles:Os01g0785900

Genome Context

<gbrowseImage1> name=NC_008394:35085483..35087781 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:35085483..35087781 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcgagaggaggcgccgtgccagcgctgtcgccggcggccgggctgaggatgagaaggctgcttcggcgcctgcggccgcggccccggcaccgacggtgtggttcgcgctgaagaggtcgctgcactgccggtccgagccgtcggaggtgcacgtgccgaggcccaaggccgtcgccgccgccgctgcgggcggtggcgggcacctctcggcgattgtgaccaagcgcgcggcgccgcggtcgggttgctcccggtcgatagccaacctgcgggacgtcatccacgggagcaagcgccacccggagcggccgccgagctgcagcccgaggtccatcggcagcagcgagttcttgaaccccatcgcccacgaggtggtgctcagcaccaactcccgctgcgagctcaagatcaccggcttcggtggctgcggcggcctcgcggcggcggcggcggcggggggcggcgtactcgcgtcgccgcacgaggcggacggcgacggcgccgtggtgtcgtcgttcgttggcacgctccggccgggcaccccggggcccggctggagccacggcctgcagtacagcggctcgtgccggggcagcatgcggtgcacgcctccgaggtcgccgaatgtgctgctggacagcagggacgccgccgcggccggggtgaccgctcaccgcgcgtcctgcgaggacgccgtcaagagctttggcaagggcggcggcctaagctgccaccgttgcggtgagcagttcagcaagtgggaggcactggaggcgcaccacctttccaagcatgcagtgacggagctggtggaaggggactcgtcgaggaagatcgtggagatcatctgccggacgagcctgctcaagtcggagagcagctgcgtgcggatcgagcgtgtgttcaaggtgcacaacacgcagcggacgctggcgcgcttcgaggagtaccgtgaggcggtgaagctgaaggcgagcaagctgcccaagaagcacccgcgctgcctcgccgacggcaacgagctgctccgattccacggcgccacgctctcctgcgcgctcggcggcgcggcgggctcctccagcctctgcgcctccgacaagtgcgccgtctgccgcatcatccgccacggattctccgccaagaaggaaggcaaggccggcgtcggcgtcttcaccacgtccaccagcggccgcgcctacgagtccatcgaggcctccgccggcgccgtcgtcggtggcgacgacccggcggcgacgcgcaaggcgctgctggtgtgcagggtcatcgccggcagggtgcacaagccgctcgagaacctcaaggagttcgccggacagaccggcttcgactcgctcgccggcaaggtcgggccctactccaacatcgaggagctctacctgctgaacccgagggcgctgctcccgtgcttcgtggtcatctgcaaggcttaa</cdnaseq>

Protein Sequence

<aaseq>MGERRRRASAVAGGRAEDEKAASAPAAAAPAPTVWFALKRSLHC RSEPSEVHVPRPKAVAAAAAGGGGHLSAIVTKRAAPRSGCSRSIANLRDVIHGSKRHP ERPPSCSPRSIGSSEFLNPIAHEVVLSTNSRCELKITGFGGCGGLAAAAAAGGGVLAS PHEADGDGAVVSSFVGTLRPGTPGPGWSHGLQYSGSCRGSMRCTPPRSPNVLLDSRDA AAAGVTAHRASCEDAVKSFGKGGGLSCHRCGEQFSKWEALEAHHLSKHAVTELVEGDS SRKIVEIICRTSLLKSESSCVRIERVFKVHNTQRTLARFEEYREAVKLKASKLPKKHP RCLADGNELLRFHGATLSCALGGAAGSSSLCASDKCAVCRIIRHGFSAKKEGKAGVGV FTTSTSGRAYESIEASAGAVVGGDDPAATRKALLVCRVIAGRVHKPLENLKEFAGQTG FDSLAGKVGPYSNIEELYLLNPRALLPCFVVICKA</aaseq>

Gene Sequence

<dnaseqindica>1588..2243#180..981#gcgtcctcctcctgtgccgccgcgctctctctctctctcgcttcggatgccgctattgctgctgctgcgcctgtggctgccataagtatatcgcactccacggtgaccgaccgaccgacgcagtcgtcacgggcgcggcagatagctggctagtggctagcaccgcgcgtcgagacgggatgggcgagaggaggcgccgtgccagcgctgtcgccggcggccgggctgaggatgagaaggctgcttcggcgcctgcggccgcggccccggcaccgacggtgtggttcgcgctgaagaggtcgctgcactgccggtccgagccgtcggaggtgcacgtgccgaggcccaaggccgtcgccgccgccgctgcgggcggtggcgggcacctctcggcgattgtgaccaagcgcgcggcgccgcggtcgggttgctcccggtcgatagccaacctgcgggacgtcatccacgggagcaagcgccacccggagcggccgccgagctgcagcccgaggtccatcggcagcagcgagttcttgaaccccatcgcccacgaggtggtgctcagcaccaactcccgctgcgagctcaagatcaccggcttcggtggctgcggcggcctcgcggcggcggcggcggcggggggcggcgtactcgcgtcgccgcacgaggcggacggcgacggcgccgtggtgtcgtcgttcgttggcacgctccggccgggcaccccggggcccggctggagccacggcctgcagtacagcggctcgtgccggggcagcatgcggtgcacgcctccgaggtcgccgaatgtgctgctggacagcagggacgccgccgcggccggggtgaccgctcaccgcgcgtcctgcgaggacgccgtcaagagctttggcaagggcggcggcctaagctgccaccgttgcggtgagcagttcagcaagtgggaggcactggaggcgcaccacctttccaagcatgcaggtgagggtgacatttgcactgcagctcatagtacacggtactgcggtacacggtacacccacaggcggtggtggatctcctcgtcgttcgggaaaaatgctgttcttttttttcatgcatttccagagcacgttaatcccaatagtgcatgttttcctgttaatgttatgggcggtcaggcggtgtggaactttagctatcaatagacatttctttacctcaaagtgcagtgcatgtgtgttcctttagctcagaactttacctgtatggatttcaatttcactttcaccagctaggttcctcaaaacatctgctttcttctcctttatgcgaatccatgctttcaactttgctataactgcgaacctggtgttcagagatcctgctagatctttcattttgttgtaccagtagaaaataaagtagggagtaatcactccatgcttttttcctccattactgcatcccagccatttatcgtagtaaaactaacttgtaaagtgatagtactagcatgattaagtctcaattaagcatcttgcagagtcgacactgaccaatggtcttgaatgcatgtgtgtatgtatgtgacgggatcgatggcagtgacggagctggtggaaggggactcgtcgaggaagatcgtggagatcatctgccggacgagcctgctcaagtcggagagcagctgcgtgcggatcgagcgtgtgttcaaggtgcacaacacgcagcggacgctggcgcgcttcgaggagtaccgtgaggcggtgaagctgaaggcgagcaagctgcccaagaagcacccgcgctgcctcgccgacggcaacgagctgctccgattccacggcgccacgctctcctgcgcgctcggcggcgcggcgggctcctccagcctctgcgcctccgacaagtgcgccgtctgccgcatcatccgccacggattctccgccaagaaggaaggcaaggccggcgtcggcgtcttcaccacgtccaccagcggccgcgcctacgagtccatcgaggcctccgccggcgccgtcgtcggtggcgacgacccggcggcgacgcgcaaggcgctgctggtgtgcagggtcatcgccggcagggtgcacaagccgctcgagaacctcaaggagttcgccggacagaccggcttcgactcgctcgccggcaaggtcgggccctactccaacatcgaggagctctacctgctgaacccgagggcgctgctcccgtgcttcgtggtcatctgcaaggcttaactccagagtcatgcattgcaaacgactaattaatcaagtaattaaccattctttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0785900, RefSeq:Os01g0785900