Os01g0802100

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Revision as of 05:06, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0802100| Description = Similar to 4-diphosphocytidyl-2-C-methyl-D- erythritol kinase, chloroplast precursor (EC 2.7.1.148) (CMK) (4-(cytidine...")
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Gene Name

Os01g0802100

Description

Similar to 4-diphosphocytidyl-2-C-methyl-D- erythritol kinase, chloroplast precursor (EC 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl- D-erythritol kinase) (CDPMEK)

Version

NM_001051079.1 GI:115440528 GeneID:4327968

Length

5239 bp

Definition

Oryza sativa Japonica Group Os01g0802100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:35727072..35732310

Sequence Coding Region

35727158..35727346,35728252..35728347,35728443..35728511,35729232..35729336,35729440..35729496
,35729653..35729853,35730503..35730595,35730658..35730757,35730910..35731009
,35731457..35731542,35731882..35731991

Expression

GEO Profiles:Os01g0802100

Genome Context

<gbrowseImage1> name=NC_008394:35727072..35732310 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:35727072..35732310 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcttgctccacccacctcctgtcccagagcctctacccgctcaaccgcgctaacccggcagccgcgcgcgggcacctccggttccaggcttctcccagtgtgaggctcggctccggcaccagtcgccgccgggcgctgggcctgagagtcgccgcgtcggcggagcaagggaggaggcaagtggaggttgagtatgatctacaagcaaagttcaacaagctagcggaccaaattgaccagaatgctgggattacacggctgaacctattctcaccttgcaaaattaatgtgttcttgaggataacgggtaagagaccagatgggttccatgacctggcttctctgtttcatgtgataagtttgggtgatactatcaaattctcattgtcaccaagtaagagcaaagatcgcttgtcaaccaatgtagcaggtgtcccagttgatgaaagcaatttgatcatcaaggcactcaatctttaccgcaagaaaactggaactgacaactttttttggattcatcttgataagaaggtccctactggtgctggtcttggtggtggaagcagtaatgctgcaactgcgctgtgggccgccaaccagtttagtggctgcattgcttcagaaaaggagcttcaggagtggtctggagagataggatcggatattcccttcttcttttcacaaggagcagcgtattgtaccggtagaggagagattgttgaagatattcggaatccattgccagcaaatttgccgatggtactagtaaagccacctgaagcatgctcaacagctgaagtttacaagcggctcaggttagagcacacaagtcaaactgatcccttggtattgctcaaggaaattactgaaaatgggatatcacaggatgcctgtgttaatgatctagaacctccagcatttgaggtgttgccatcactaaagaggttgaagaaacgtataattgctgctaaccggggagattatgatgctgtttttatgtcaggaagtggaagcacaattgttgggattggttcaccagatccgcctgcatttgtgtatgatgatgatgactacaaggatacttttgtgtcagaggcctgcttcctcactcgtaatgagaacgagtggtacagagaaccaatctcatcgaaaatcactagcgaggaagatttacctccggaggtagcatcagtttctgactga</cdnaseq>

Protein Sequence

<aaseq>MACSTHLLSQSLYPLNRANPAAARGHLRFQASPSVRLGSGTSRR RALGLRVAASAEQGRRQVEVEYDLQAKFNKLADQIDQNAGITRLNLFSPCKINVFLRI TGKRPDGFHDLASLFHVISLGDTIKFSLSPSKSKDRLSTNVAGVPVDESNLIIKALNL YRKKTGTDNFFWIHLDKKVPTGAGLGGGSSNAATALWAANQFSGCIASEKELQEWSGE IGSDIPFFFSQGAAYCTGRGEIVEDIRNPLPANLPMVLVKPPEACSTAEVYKRLRLEH TSQTDPLVLLKEITENGISQDACVNDLEPPAFEVLPSLKRLKKRIIAANRGDYDAVFM SGSGSTIVGIGSPDPPAFVYDDDDYKDTFVSEACFLTRNENEWYREPISSKITSEEDL PPEVASVSD</aaseq>

Gene Sequence

<dnaseqindica>87..275#1181..1276#1372..1440#2161..2265#2369..2425#2582..2782#3432..3524#3587..3686#3839..3938#4386..4471#4811..4920#aatccccgtcatctccaagagccttcacccattgcgctcctcttcgcctctggtaagcagcagcagcagcatccgcaggagcagccatggcttgctccacccacctcctgtcccagagcctctacccgctcaaccgcgctaacccggcagccgcgcgcgggcacctccggttccaggcttctcccagtgtgaggctcggctccggcaccagtcgccgccgggcgctgggcctgagagtcgccgcgtcggcggagcaagggaggaggcaagtggaggtaagctgccgtcgcgttcgcccccatattacctgcttggattgggagggattaatttcataatttggattgcagcggagaagcgcgtagaattagctttgatgttcgtccgttttggtttcgtactaaactagaggaatgcacggaggaagattttgagctgatgcaaagcaatcacgctaaactcagaggcgaatcaccagcttgattttgaaaacttcctacgggcgagggcgagctagaggtgccgcgttcagctgtcgctgagccgtcggtggcacgaaggtcccgtcgcgggggacgttccctgccgatcctctcgctcgacgccggagtcgtccatcgctgaattccgtcttgctcggggttggcggtcggacgttcgccgtcggcgtcatttccaccaccagccgcgaccacgtttggcttcttccgtgctgccgcaatctctccccgcgtgcactcgatgataagagagcaaaagtgcaaaacttcccctatttgattggaaccagggcgcaatgccgaagagcacatggatatggataagaaggctgactgcctgctcttggaatcgtcatctgttaattacgttttctccctgttcctgctatttcattgagtatttgtgtttccaaaccaggtctgcactcgcatttcctttccatttcccgggttccaaatggatccaatttcttaatgatgacaccccttggttagatcatcatactataacttctgttgttcagtttgaatcttacccattatgctcaaatagcttcctttcttaatgcttatcctttctttataaattctgttttcttgggagcttctaaaaattcttctgaagtccttttcttttcctgacacaataagtatatagtttataatggtgtgtactttaggttgagtatgatctacaagcaaagttcaacaagctagcggaccaaattgaccagaatgctgggattacacggctgaacctattctcaccttgcaaagtatgtacccagcgattttgttttaagaatagtttaaagcttgatcgtttctattgtgcttctgactcattttatataccttttttttggtgtagattaatgtgttcttgaggataacgggtaagagaccagatgggttccatgacctggcttctctgtttcatgtgagcattttacttgtacctgctttgatatgtcatgcatgaacgtacaaaggtgttttacagttcataatatatccatttttttcaatgttcaaaaatagtttgctgggataatagacattgttattatttgtccaagcaagagactatatgcagcgatcaggaatttatgtgatttaacatgccaaaggacaaaatagaaaacagaaaagtattactggtttactacataaagcaatcactataggaaaaaatatgcaaaaacaatttcatcttctatttcctgacatcaacagacatatgaaactccgaccattcctctttgcaaccttccatggtgtacaacataaatataaatatgctgattctgaatgataaactagagttgttagcgacatttatatttaaaccaaggtgaactcttgactcttgagcaattgcacctgctttgggcaacaggaaaaaaaatatacattaggagttaggaaagggactttatgaacttccgatcacatgctgatatgcacccattttggttcgtgcaattttaaataaaactaacttacaggggcctatgtcgtattgtctgcaattataggatgcaatctaacatatcattatgttacagtggttccttcctattagtgtggtcatatacttattgtgctgcataaatttgttttgatttcacttttaataattctgttaaggaaatcttaggtgataagtttgggtgatactatcaaattctcattgtcaccaagtaagagcaaagatcgcttgtcaaccaatgtagcaggtgtcccagttgatgaaagcaatttggtatgtggctacagatacttctgccattcttcatcttactaataaatgctctatatgtatttctagctgactaactttactattctatttcatgaatctgcagatcatcaaggcactcaatctttaccgcaagaaaactggaactgacaactttttttgggtaatgccaattgcacatttctaccaagggattatacatcaatttttgctactagtataaagttttctctatcaaagagactgaattctgttctgtttattttttttctttggtatgctggggcttatctttacttttctcttaattgaaaaacagattcatcttgataagaaggtccctactggtgctggtcttggtggtggaagcagtaatgctgcaactgcgctgtgggccgccaaccagtttagtggctgcattgcttcagaaaaggagcttcaggagtggtctggagagataggatcggatattcccttcttcttttcacaaggagcagcgtattgtaccggtagaggagaggtatttcacaaactgcttctaattgccgtgaatagtttgtagttcatttcagcatgtacagtgttccctaatttgctcaagttgctgtgttggctgatgtcatgttcttatattgacctttcatctctgtctagcaaccttggtagtacagttcagttttccgaaagtacagtacctctagagttacagtctatatgaatgtattcttattttttagcttgttccatgtttttgcctgtcaacttaatgaaactttttttaccagattatgagcaatatgttgaaatggtttgcaatgaaagccatctcattcttgactagaaactgcagtgtttattgatttgttggtatcaacttattaatggttgcccgcttagttgatttagctggtcatgctattgcaattggctcattatatgctagcgattgcttatttataaaattccccttgctctatctgttccaagtatatggctatatgctctcttagagaggaattgtactaaattgctgcttgaaaaagtacctattagttattaatttgttatttttgacaacattggtatggagatgtatatctttgatcaatattgccttgctccaaaaatgtctgatcataatctccaactctggacttaaatgtatgaagattgttgaagatattcggaatccattgccagcaaatttgccgatggtactagtaaagccacctgaagcatgctcaacagctgaagtttacaaggtaacatattttcatagcatgaattttgaaatgaatcatttactaaaatacttgcactgcagcggctcaggttagagcacacaagtcaaactgatcccttggtattgctcaaggaaattactgaaaatgggatatcacaggatgcctgtgttaatgatctaggtatgcaatttggtatcagcaattgtcgtatgctagtcccgtaccagaacttatgttatattcaataatgtttttaaaattacatccagtaagcatcccctgaaaaataacattcagtgaaatatggtacgtgtgcttgccatcttttccagaacctccagcatttgaggtgttgccatcactaaagaggttgaagaaacgtataattgctgctaaccggggagattatgatgctgtttttatgtcaggaaggtaagggggccacatttttcaatcgcttaagctagttcatgaatttatttattctttttccttttcaattttgaaagcaatcatattcccaaacatagcattcatagtgtagccattttcaaagtgtctctggagagcttcagttatgaaattttggttgtgtaattttcattgatatctaaaatgttaaaagtcaaaaaatgatgtttaattagtcattatattattttagagctttagttatgaaattttggttgtgtaatcaccagttatatcgaaaatgccaaaagtcaaaaaatgatgtttaattaatcattctaccaatttagcatcgtaagcatatttaaggtggaggttatatattgcatatatcaagtatatctatgttttatggaacattgttcaatcataaattacgtgatataatattgtatatgtaccacgcagtggaagcacaattgttgggattggttcaccagatccgcctgcatttgtgtatgatgatgatgactacaaggatacttttgtgtcaggtttgttaagttccccatcactatattcatgttttcatttcagtactgtgacaaggttttacaattgctgaatatatggcaaaactagagggtgtgtttagataatgggaaatgaggagtgggattggaattgggaaatgaatgaaatgtttggattaaatggaacggggagaatgaatggttaggatttaaagatgcattttggtgggtgggaaatcatttccctatcccattagccaaacactcccagagttctaaaatataaatagacacaagagagagagagagagtagctatcatggctgtcatctttaacgttccatgttttttttggtgcagaggcctgcttcctcactcgtaatgagaacgagtggtacagagaaccaatctcatcgaaaatcactagcgaggaagatttacctccggaggtagcatcagtttctgactgagggagtggattctatattagatctcattttgcggttatacaggatacaacatacaggtgtgcactcactgtgattagctttaaaatggtacttccactaggaaaagaaccattccaccttgaaatttgttaacgggactaggagtatcaatcattgattttgaagtgtaggtaagatcgtttactgtgtgtatttgcagcatgcgtcgtagaaacttgttacgggcataccaagtgacacacttgatatgacagaatacatcctccctgcaaaaactgtttgcacttcctgtgagtagaaagcaccaggtttggatttt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0802100, RefSeq:Os01g0802100