Os01g0869500

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Revision as of 05:12, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0869500| Description = Plant nuclear matrix 1 family protein| Version = NM_001051462.1 GI:115441294 GeneID:4324930| Length = 3367 bp| Defi...")
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Gene Name

Os01g0869500

Description

Plant nuclear matrix 1 family protein

Version

NM_001051462.1 GI:115441294 GeneID:4324930

Length

3367 bp

Definition

Oryza sativa Japonica Group Os01g0869500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:39441906..39445272

Sequence Coding Region

39442747..39442944,39443336..39443434,39443599..39443706,39443793..39443883,39444009..39444134
,39444428..39444519,39444670..39444731,39444823..39444908,39445058..39445191

Expression

GEO Profiles:Os01g0869500

Genome Context

<gbrowseImage1> name=NC_008394:39441906..39445272 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:39441906..39445272 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtcgaagcagatggaggagatccagcggaagctggcggtgctggcctacccgcgggccaacgcccccgcccagtccctcctcttcgccggcgtcgagcgctaccgcctcctcgagtggctcttcttccggctcctaggcgacagatcgccgttcacgcagcagaactggcagggggatagcctcgaccgcgacgaggagaacagcaggatccaacacctggccgagattgcgaatttccttggtataacgccttcggttgacacggaggcaattcagggtagaggtagctacgatgagcgtgtagagcttctctgtctcattgttgatctagttgaagctagctgctatgctgacaatccagagtggagtgttgatgagcagctggcaaaagatgtgctgctcgtagattcaattgcagagaaacaagcccaaatattttctgaagagtgcaaactatttcctgcagatgttcagatacaatcaatttaccccttgcctgatataacagaactggagttgaagctctccgagtatactaaaaagatgtcaaatttgcaactgatggttcaggagttagcatctaagtatgactataatccgaatgaagactatgccgagacagagttaaaactgagggaacatttgcaatcgttcctagaaacagtaaaatccttcaatatgatctacactaaggaaattcatccttggacacatatgatggaggtccctcaattgcatggttttggtccagctgctaatcgcttgttggaggcatataacacacttttgaagttccttagtaatttgaggagcctacgggattcgtatgcagcaatggctgcaggatcgctttcagcatctaatgagccttcatctgtcaccaaaattatctccgactgtgaatctgcacttacattcttaaataacagcctttccatcctttcaacttctgtggcacgggagcagggtgagactctgaattcacagtag</cdnaseq>

Protein Sequence

<aaseq>MASKQMEEIQRKLAVLAYPRANAPAQSLLFAGVERYRLLEWLFF RLLGDRSPFTQQNWQGDSLDRDEENSRIQHLAEIANFLGITPSVDTEAIQGRGSYDER VELLCLIVDLVEASCYADNPEWSVDEQLAKDVLLVDSIAEKQAQIFSEECKLFPADVQ IQSIYPLPDITELELKLSEYTKKMSNLQLMVQELASKYDYNPNEDYAETELKLREHLQ SFLETVKSFNMIYTKEIHPWTHMMEVPQLHGFGPAANRLLEAYNTLLKFLSNLRSLRD SYAAMAAGSLSASNEPSSVTKIISDCESALTFLNNSLSILSTSVAREQGETLNSQ</aaseq>

Gene Sequence

<dnaseqindica>2329..2526#1839..1937#1567..1674#1390..1480#1139..1264#754..845#542..603#365..450#82..215#ccaccaccaccagcagcggcagcctcggccggcgcggcgcggcgaggtggggaagcgaggaagagtgggagggctctcgccatggcgtcgaagcagatggaggagatccagcggaagctggcggtgctggcctacccgcgggccaacgcccccgcccagtccctcctcttcgccggcgtcgagcgctaccgcctcctcgagtggctcttcttccggtacgcggccacccacgccacattccctatttccgcatctcaatctgcaaggcttgctgcacagttgcgggtagatttggtccgcgttctttttccccctcacagtcccaactcgaaattgagggtttcgttttctctttgttgcggaggctcctaggcgacagatcgccgttcacgcagcagaactggcagggggatagcctcgaccgcgacgaggagaacagcaggatccaacgtaaggttttttagtttcaaacatttcactactgctgttgttcttgggatcaaagtgcggtgctgacattgaaatgctggggactgtgcagacctggccgagattgcgaatttccttggtataacgccttcggttgacacggaggcaattcaggtgagagaaatgggtgtgcttgtttgtgtcatacggtaacagttgttgaattttagctgctgttatacaggatctatgaattgtgagaatggcagtaatatatttggggttaaattgtctttggtgtgctcataactgttcgaattgcagggtagaggtagctacgatgagcgtgtagagcttctctgtctcattgttgatctagttgaagctagctgctatgctgacaatccagagtggaggttggctttaagcttgactatttctatttgcaacgaaataatacccttcatgttattcatacaggacatagtcataaacattgtcagtttgtgataattcagtactattttttcatgaaacttttgttctaggcttctagcaatgtaagaaaataaaagtatatctgaagaaaacatgtaagaaaataaaagtatatctgaagaaaactgaactttcatatacatcaaataatccattaggatcaacatgagtgcattggagacataattcctaacaaattgctttttggtagtgttgatgagcagctggcaaaagatgtgctgctcgtagattcaattgcagagaaacaagcccaaatattttctgaagagtgcaaactatttcctgcagatgttcagatacaatcaatttaccccttgtaagtacttcttatctgataattttgttggttgtaagtactcccagttgaagaaaaagaggaaaagtaagatgttgaaaatcagctgtgtatgcttcaaatcttgagtcattctcattttgcaggcctgatataacagaactggagttgaagctctccgagtatactaaaaagatgtcaaatttgcaactgatggttcaggagttagcatctaaggtatgcgcttaacagccacataaaccttgatagtctgtagcatgttctatgctatttacactgatggtacaattgctgttgctcagtatgactataatccgaatgaagactatgccgagacagagttaaaactgagggaacatttgcaatcgttcctagaaacagtaaaatccttcaatatgatctacactaaggtgaatatcttatgcaatggtttcttttttcttcccaatttcccatacttctgctgtacgttcagataaatatttttgacatgatatctttttctgctaacggttgccatctttatgtgttttgagttttacttgttagatgatagaattgcttttcattgtaggaaattcatccttggacacatatgatggaggtccctcaattgcatggttttggtccagctgctaatcgcttgttggaggcatataacacacttttgaaggtactagcggaatatttggtttatttgacattttgttgctcatttcaagttttgcttccctctatggtcaatgtgtcatgatctggttatttgaattggtgaaaacaaatataaaaggagctgattagccggtggtcaatgtatgtcttgtattgctatcagattatttcagaataaccaagatgctaatatggtatggtataatatctgatagttcattgatagacccatctctcatttaaactaatgaaaaattctagagttcttttacttcatattctttttaactgattagctctgtgcggtcttcttgcttgtgtctactgtcttctgtctggtaaactgagcatataaacattgcttgacttgagtgcctatttgtgatgtgcagttccttagtaatttgaggagcctacgggattcgtatgcagcaatggctgcaggatcgctttcagcatctaatgagccttcatctgtcaccaaaattatctccgactgtgaatctgcacttacattcttaaataacagcctttccatcctttcaacttctgtggcacgggagcagggtgagactctgaattcacagtagcctgatatcaggatacttgaataaccttgtagcaagtcgatcatttgctttttgtggcttgtagtattgccgttgtgccaattgtcgttgtgttcttgtgtctgtagttcgtaactgcatagatgaaaactttaacattagcttatattgaaatatcatgccgagagctctctttcaaggctgtgtacggctgcacgttgcagcggctgcaacgctgtacaaaataatgtgcgaggcggccgcagccgcagtagtgcagccgtaacaggccccaagtttgtgcagtacttgtatgttttttcttttttctttttttccccctttgattctttagacagtagtaagtttcgctaagcaaatgtaccttttttccccctgaaaacggttctaaatttgacacatcaatgatgaattgaatcaagtcacagcctgcacgttgagccacttcccggcgcttcgttttccggatgctgctgccgtaagagctagccttcatcaatactgtccattgtccaacacttgtatgttgtgtttgctcttcttgatcttttggcggttgccaatttcagtgtacagatcttcaaaacttgacaccatggttctgaatcttctgataaacgaagggaaaagcctgcatttctacagagccacagcgatgcacgcacttgtgtttgtgtacgtataatcaggcttgacatatttgctttcaagagttcaagaccaagcatttcccagtccgatcgcagccacacgacgtttcagttttggacgtcacaacgccgccggcgtacgattgtacgagctgagggcgatggactacccaccacctactccctctgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0869500, RefSeq:Os01g0869500