Os01g0873800

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Revision as of 05:13, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0873800| Description = Conserved hypothetical protein| Version = NM_001051489.1 GI:115441348 GeneID:4324767| Length = 6726 bp| Definition ...")
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Gene Name

Os01g0873800

Description

Conserved hypothetical protein

Version

NM_001051489.1 GI:115441348 GeneID:4324767

Length

6726 bp

Definition

Oryza sativa Japonica Group Os01g0873800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:39646569..39653294

Sequence Coding Region

39646786..39647073,39647554..39649893,39649985..39650059,39650131..39650322,39650510..39650761
,39650836..39651391,39651469..39651676,39652212..39652324,39653065..39653207

Expression

GEO Profiles:Os01g0873800

Genome Context

<gbrowseImage1> name=NC_008394:39646569..39653294 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:39646569..39653294 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgcgtcgagcgagctgcagtgcgtggggaggctggaggtcgccgcgccgccgccggcgcgctacctccgggtgggctccctccccgtccccaccgactcccccgcctcgctccccgccctcctcccatcctcgtccccaactggagctccaaggtatcaaatgttgccattggagactgatctcaacacactcccgatgataccaaatattccagaaaaggttttcccgatggacgcaaagagtactgaaggatcacgatatggaagtggacttgccaaccaaaacttatcaaggaagtgtgaagcactggctgtgtcaggcctagctgaatatggtgatgaaatagatgtggttgctccaactgatatcctaaagcagattttcaaaataccatactccaaggcacaagtatctattgctgttaaccgtattggagatacacttattctaaacacaggtcctgatgttgatgaaggtgaaaagatattcaggagacaaagcaaccaccccaaaggatctgatccttcaatgtttcttaattttgcaatgcattcagtgagagcagaagcttgtgattgcccaccaagtcatcaaccatcaaaggagaagcaaacggcatccgctatcttgcgtggaccatttggccaaagggagggtccattggattcgccatcgtcatctagttttagcacttcaccttatctggaccagaatatcagtaaaagtagaaaaacatcacatggtgctcgtgaaagcctgtactggggtgcaagggaaaataagcagaaagttaaagggtctgaccctgttaagaaaaccactcatgttggtgacaaacccagatgcgacgtgcaagaatccgagaaaagtaggagggtgggaaacaatggatttcggaaggtttgcttttggcagtttcataatttccatatgcttttgggtagcgacttgcttatatttagcaatgagaaatatatggcggtcagcttacacctctgggatgtttcgagacaggttactccactgaactggcttgaagcttggctagataatataatggcaagtgtgccagaattggctatatgttatcatcaaaatggtgttgtgcaaggttatgagctcttgaaaaatgatgatatttttctacttaagggtgtatctgatgatggtacacctgcatttcatccacaagttgtccagcaaaatggccttgctgtcctgaggttcctgcaagataactgtaagcaagaccctggtgcatattggttgtacaagggtgctgaagaggatgttatacagctgtatgatctgtctatcttacctcaaaatcatactgctggtgatcatagatctacttgtggtcctatgtcttctttaatgaagaagggtagaaaggagtcgttgttctctttgggcacactcttgtaccgtgttgctcacaggatgtctttatcaaaggtgcctagtaatagagcaaaatgtgcgaagttcttcaaaaaatgtttggactttctcagcgaacaggatcacttggttgtccgggcgtatgctcatgaacagtttgcaaggctcatccttaggtgttacgaggagttggaattgacatctgaatcatttttgcttgaatctgaagttactcttactgacttggatgagtctccagacctgagccttgagaatttaccatcgaagcaaaatgaagtgctgacagagattagcgaggaaccagcaaccttagatggaatgttggaatgttcacggtcaggatcttctcaagcgtcaaatagtttagtggatccgggtcatgttgacattagtcctgtatcttcagctacaaaaggagatgttactgtggatagcttggtaatgtgtcagtctggaactcaggtatcaaggacaattgctgatgcaatatcctccaagttggcagctatacaccatgtatcacaagctatcaaatcccttcgatggaaccgacagctccagaatacacaagatgattgcgttggcaatgcagataccatttgggagaaacctgttgacttctctttatgccgatgtggtgacattgactgtattgaagtttgcgacattagagagtggctaccaaaatcgaaaatggatcacaaattatggaaacttgttcttttgctaggtgaatcttatctggcactaggagaggcatacaagaatgacgggcagcttcgtcgcactcttaaagttgtggaattggcttgtctagtttatgggtctatgcctaaaaatctcgagggtgagcaattcatctcatccatgtccaatagttcgttgagtgttgaagatggtgatctaaaggcaaatcttgttttggatgaagcagactatttcaaaaatgctaaatgtttcaattatgatgtttctgctgggcagttgcctccaaactatttattttgggttaaggcgtggatgcttgtaggggatgtctatgcagaatatcacagattgagaggtcaacaagcaccagtgttgcctgaacaaaagcctgatggtgaagttagaatgtcaaatgaagttgcaatggaggtcaaacgtcttaagagaaaactgggaaaggataagcagaattgtggcacatgttcactgataaattgtagctgccaaagtgatagggcaaatagtggcagcagtgcaagcagcagtagttctgaggcctctacactatatggaagaaagaaaaacaaaaaatcatctggcaggaacttccattcacagtctagagaaactaaagagaatcccagcacccaggactctatgggagattctgaaaaaaggtctgtatcgaatgttgaaattgatactaataattacaccatggaaaatcaatcaagaaataatgatggggatcctgataaatctaaagaagatgtttccagtgtgagggttggtggtatctttaagttccttggaggacctgaaccaggagatgttgaatacaatttgcattctgctattcattgctacgatgcagccaagggagtcatttttgcatttccagtgcccttggctgaaaaatccaccattcttaagaaaagaggctgggcattcaatgaactgggctgccataggcttgaaagtagaaatctgggtaatgctgaaattgcttttgctgatgctattaaagcatttcaagaggttgctgaccacactaatgttatattaatcaactgtaacttaggtcatggtagaagagctttagcagagcaatttgtgtcaaggatagatgaatttcagaagtatgattttcctcaagatgcatatatgcaatcctttaagtctgctaagtcggaatattttcaagctataaactattacacagcagctaagaggcaactaacatatgctgacaatgaggttgataaagtactttacaatgaggtttacactcagtatgcccatacacacctgaggcttggaatgcttttggcaagggaaagcttcttaactgacagttatgaaggtggatttgttgatgaatcatctaatagaacagttcttgagatttcagcaagtgatgctttcagagaggctttgtctacatatgaatctcttggtgaacatcgcaagcaggaagccgcttttggccactttcagcttgcttgttatcagagggatctatgcttaaggttcctcgatttaattgacaaggaggtcaaacagaagaatgaggataaatatcgtcagaaagctaagtggtatggttctttagcagaaaagaactggcagagagctttagaattttatggtccaaagacacattctaccatgttcttaaacatccttatggcacaatctgccctttccgttaacctctctgattcgttccactcaagtgtgatgcttgaaaatgcattggtgcacttgctggacggtcgccatgtggttgaagcaaatgatgagtattcaaacgacttggatctggacataaaaccgaaattctggagccagctgcagcgcctgctgaagagcatgttggcagctgctcgaccggcagcttctgtcggccaggccaacgccagcaacagcagaggagacaccgccaaactaaaagagatgtatcgtctgtcgctcaaatcaacctctctgggccagctgcacgcgttgcacaagatttgggtctcctaa</cdnaseq>

Protein Sequence

<aaseq>MDASSELQCVGRLEVAAPPPARYLRVGSLPVPTDSPASLPALLP SSSPTGAPRYQMLPLETDLNTLPMIPNIPEKVFPMDAKSTEGSRYGSGLANQNLSRKC EALAVSGLAEYGDEIDVVAPTDILKQIFKIPYSKAQVSIAVNRIGDTLILNTGPDVDE GEKIFRRQSNHPKGSDPSMFLNFAMHSVRAEACDCPPSHQPSKEKQTASAILRGPFGQ REGPLDSPSSSSFSTSPYLDQNISKSRKTSHGARESLYWGARENKQKVKGSDPVKKTT HVGDKPRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGSDLLIFSNEKYMAVSLHL WDVSRQVTPLNWLEAWLDNIMASVPELAICYHQNGVVQGYELLKNDDIFLLKGVSDDG TPAFHPQVVQQNGLAVLRFLQDNCKQDPGAYWLYKGAEEDVIQLYDLSILPQNHTAGD HRSTCGPMSSLMKKGRKESLFSLGTLLYRVAHRMSLSKVPSNRAKCAKFFKKCLDFLS EQDHLVVRAYAHEQFARLILRCYEELELTSESFLLESEVTLTDLDESPDLSLENLPSK QNEVLTEISEEPATLDGMLECSRSGSSQASNSLVDPGHVDISPVSSATKGDVTVDSLV MCQSGTQVSRTIADAISSKLAAIHHVSQAIKSLRWNRQLQNTQDDCVGNADTIWEKPV DFSLCRCGDIDCIEVCDIREWLPKSKMDHKLWKLVLLLGESYLALGEAYKNDGQLRRT LKVVELACLVYGSMPKNLEGEQFISSMSNSSLSVEDGDLKANLVLDEADYFKNAKCFN YDVSAGQLPPNYLFWVKAWMLVGDVYAEYHRLRGQQAPVLPEQKPDGEVRMSNEVAME VKRLKRKLGKDKQNCGTCSLINCSCQSDRANSGSSASSSSSEASTLYGRKKNKKSSGR NFHSQSRETKENPSTQDSMGDSEKRSVSNVEIDTNNYTMENQSRNNDGDPDKSKEDVS SVRVGGIFKFLGGPEPGDVEYNLHSAIHCYDAAKGVIFAFPVPLAEKSTILKKRGWAF NELGCHRLESRNLGNAEIAFADAIKAFQEVADHTNVILINCNLGHGRRALAEQFVSRI DEFQKYDFPQDAYMQSFKSAKSEYFQAINYYTAAKRQLTYADNEVDKVLYNEVYTQYA HTHLRLGMLLARESFLTDSYEGGFVDESSNRTVLEISASDAFREALSTYESLGEHRKQ EAAFGHFQLACYQRDLCLRFLDLIDKEVKQKNEDKYRQKAKWYGSLAEKNWQRALEFY GPKTHSTMFLNILMAQSALSVNLSDSFHSSVMLENALVHLLDGRHVVEANDEYSNDLD LDIKPKFWSQLQRLLKSMLAAARPAASVGQANASNSRGDTAKLKEMYRLSLKSTSLGQ LHALHKIWVS</aaseq>

Gene Sequence

<dnaseqindica>6222..6509#3402..5741#3236..3310#2973..3164#2534..2785#1904..2459#1619..1826#971..1083#88..230#attagccaaagcatccaaacgcccgagaaaaaaccgcggcgatcggcggcggcggcggcggcggcgaggggtacggctacggcggcgatggacgcgtcgagcgagctgcagtgcgtggggaggctggaggtcgccgcgccgccgccggcgcgctacctccgggtgggctccctccccgtccccaccgactcccccgcctcgctccccgccctcctcccatcctcgtccccgtgagctctctctctctctctctctctctctctctctctctctctctctctctctctctctccctgaacttcggttcggagtgcgttcccgcgcgattgatgatgtgatgcgtcgagttgttcagcaatgcgttcgcgatttgttgagtttctggtgtagctgttcctgatcgagtcgcagggttataagagtttgggattttgctaggattttaacggttgggagcggggaattcgagctagaataccattggagcgagcgcttctgtgtggtggaattagaattgtttgtgattgtgattcgttaggggtgactaaggagaggaagtggggtttagctgagatttggagacaaggactcagtctctttgttcgatttgttgattggtatgagagattgttgatggattgattagggggaagcgaatggcaaggcagttgtgctgctgtaagcaaatattggcattattatgtatctgaattcagtggctacaacttatagccgagcagaacatagatatttctgtccggacctcgaatgctgatggttattaaaatgctgcttagcctttttttttcctcctaatgcatgtgtattatttaaatgtttagttattatcattttgagatattactgtataagagaacatagtcgttataaaatgggatttatcgagtttgctgatacttgattaaggagaagtgatgttttgatttttctcttgtcacaaataatgtagaactggagctccaaggtatcaaatgttgccattggagactgatctcaacacactcccgatgataccaaatattccagaaaaggttttcccgatggacgcaaagagtactgaaggtgatctcttcttgaggcttgatcattatagtttgattcacaaaagaaatggcaggcttcttaagagcttctaccatagggaaaacatagataatattacatcttgtaggtgcaagtaaattttaccatacatgccactcttactatcaggattcctactgtatccaagttttcatggttgcatcttgtatgtgtagattatatttggtattttaaatagctttatttatgcaatctagatgagaaggccagctaaatttatattccaaatttttttcttcggctgcaatagaagacttcatatctcctgatgcatccattagtattaacaaatggatagtcagaggaagctaaaataatggaaatgcgataccttggttttctattctatcgtcacacatgcacaagctgttgttgcagctgcaagaccacatgtggctataagtctgtttgagctatgtaatagtcacagttggttatatctgctgggcatgccaatgtatttctaattgttatttttgttcatattattcaggatcacgatatggaagtggacttgccaaccaaaacttatcaaggaagtgtgaagcactggctgtgtcaggcctagctgaatatggtgatgaaatagatgtggttgctccaactgatatcctaaagcagattttcaaaataccatactccaaggcacaagtatctattgctgttaaccgtattggagatacacttattctaaacacagggtaaattggccgtttcattgttgcaactagctaccatgctctatgtacttcatactaatgcaatgtacgtgttgcagtcctgatgttgatgaaggtgaaaagatattcaggagacaaagcaaccaccccaaaggatctgatccttcaatgtttcttaattttgcaatgcattcagtgagagcagaagcttgtgattgcccaccaagtcatcaaccatcaaaggagaagcaaacggcatccgctatcttgcgtggaccatttggccaaagggagggtccattggattcgccatcgtcatctagttttagcacttcaccttatctggaccagaatatcagtaaaagtagaaaaacatcacatggtgctcgtgaaagcctgtactggggtgcaagggaaaataagcagaaagttaaagggtctgaccctgttaagaaaaccactcatgttggtgacaaacccagatgcgacgtgcaagaatccgagaaaagtaggagggtgggaaacaatggatttcggaaggtttgcttttggcagtttcataatttccatatgcttttgggtagcgacttgcttatatttagcaatgagaaatatatggcggtcagcttacacctctgggatgtttcgagacaggtatgttttattctattgaatatggcttcacaatttcattttttactctttctgttgacaaatgtgtttcataggttactccactgaactggcttgaagcttggctagataatataatggcaagtgtgccagaattggctatatgttatcatcaaaatggtgttgtgcaaggttatgagctcttgaaaaatgatgatatttttctacttaagggtgtatctgatgatggtacacctgcatttcatccacaagttgtccagcaaaatggccttgctgtcctgaggttcctgcaagataactgtaagcaagaccctggtgcatattgggtatggcttctaagtttattcgttctaattatcacatgctagtacttaacctttagtttcttatattatattatttgtgcgacttgggtatattttagacacaactccgacctcagtttttgcaataattttattatgctagttcttgtgctttattcatttatatactgaagttgtgtgttctcagttgtacaagggtgctgaagaggatgttatacagctgtatgatctgtctatcttacctcaaaatcatactgctggtgatcatagatctacttgtggtcctatgtcttctttaatgaagaagggtagaaaggagtcgttgttctctttgggcacactcttgtaccgtgttgctcacaggatgtctttatcaaaggtactagcgaaatgtctcttttctttgcttcatggagctttactgatcgttagtatgtatatgctttgcaggtgcctagtaatagagcaaaatgtgcgaagttcttcaaaaaatgtttggactttctcagcgaacaggatcacttggtatttttatttatcatgtcattatttatcagtttacagtttttcttgtagcgctagaaatcttctcaagattttctatttgatcctttaggttgtccgggcgtatgctcatgaacagtttgcaaggctcatccttaggtgttacgaggagttggaattgacatctgaatcatttttgcttgaatctgaagttactcttactgacttggatgagtctccagacctgagccttgagaatttaccatcgaagcaaaatgaagtgctgacagagattagcgaggaaccagcaaccttagatggaatgttggaatgttcacggtcaggatcttctcaagcgtcaaatagtttagtggatccgggtcatgttgacattagtcctgtatcttcagctacaaaaggagatgttactgtggatagcttggtaatgtgtcagtctggaactcaggtatcaaggacaattgctgatgcaatatcctccaagttggcagctatacaccatgtatcacaagctatcaaatcccttcgatggaaccgacagctccagaatacacaagatgattgcgttggcaatgcagataccatttgggagaaacctgttgacttctctttatgccgatgtggtgacattgactgtattgaagtttgcgacattagagagtggctaccaaaatcgaaaatggatcacaaattatggaaacttgttcttttgctaggtgaatcttatctggcactaggagaggcatacaagaatgacgggcagcttcgtcgcactcttaaagttgtggaattggcttgtctagtttatgggtctatgcctaaaaatctcgagggtgagcaattcatctcatccatgtccaatagttcgttgagtgttgaagatggtgatctaaaggcaaatcttgttttggatgaagcagactatttcaaaaatgctaaatgtttcaattatgatgtttctgctgggcagttgcctccaaactatttattttgggttaaggcgtggatgcttgtaggggatgtctatgcagaatatcacagattgagaggtcaacaagcaccagtgttgcctgaacaaaagcctgatggtgaagttagaatgtcaaatgaagttgcaatggaggtcaaacgtcttaagagaaaactgggaaaggataagcagaattgtggcacatgttcactgataaattgtagctgccaaagtgatagggcaaatagtggcagcagtgcaagcagcagtagttctgaggcctctacactatatggaagaaagaaaaacaaaaaatcatctggcaggaacttccattcacagtctagagaaactaaagagaatcccagcacccaggactctatgggagattctgaaaaaaggtctgtatcgaatgttgaaattgatactaataattacaccatggaaaatcaatcaagaaataatgatggggatcctgataaatctaaagaagatgtttccagtgtgagggttggtggtatctttaagttccttggaggacctgaaccaggagatgttgaatacaatttgcattctgctattcattgctacgatgcagccaagggagtcatttttgcatttccagtgcccttggctgaaaaatccaccattcttaagaaaagaggctgggcattcaatgaactgggctgccataggcttgaaagtagaaatctgggtaatgctgaaattgcttttgctgatgctattaaagcatttcaagaggttgctgaccacactaatgttatattaatcaactgtaacttaggtcatggtagaagagctttagcagagcaatttgtgtcaaggatagatgaatttcagaagtatgattttcctcaagatgcatatatgcaatcctttaagtctgctaagtcggaatattttcaagctataaactattacacagcagctaagaggcaactaacatatgctgacaatgaggttgataaagtactttacaatgaggtttacactcagtatgcccatacacacctgaggcttggaatgcttttggcaagggaaagcttcttaactgacagttatgaaggtggatttgttgatgaatcatctaatagaacagttcttgagatttcagcaagtgatgctttcagagaggctttgtctacatatgaatctcttggtgaacatcgcaagcaggaagccgcttttggccactttcagcttgcttgttatcagagggatctatgcttaaggttcctcgatttaattgacaaggaggtcaaacagaagaatgaggataaatatcgtcagaaagctaagtggtatggttctttagcagaaaagaactggcagagagctttagaattttatggtccaaagacacattctaccatgttcttaaacatccttatggcacaatctgccctttccgttaacctctctgattcgttccactcaagtgtggtatgttccttgccatctcgaacgatcccatctgctctttgtgctagattttatttccattattattctttctagcatcatgggagtgcataacctgttacatttggttagaacagagcagcgctgtctgcttagcataattttagtaaattgtactactatgattagtgtcataatgtgtcgtggctgtcatggcagagtagttctgctgagtagtttctgacaagtgacaagtaggtggaaaaggaagcatttatactgttgcacaaattgcaatatgtcaatgcactatggctactaacacagactaatcatataataaccaatagttaggaagtgtagcttgagttctgagttagcctctgtgcctttgctgctaccgtgttgttgttccccagtatagaatgccttcttcgggcataccaaaagatgcaaatgttctgttttcgctttcataaacattttgggtctcttcttcagatgcttgaaaatgcattggtgcacttgctggacggtcgccatgtggttgaagcaaatgatgagtattcaaacgacttggatctggacataaaaccgaaattctggagccagctgcagcgcctgctgaagagcatgttggcagctgctcgaccggcagcttctgtcggccaggccaacgccagcaacagcagaggagacaccgccaaactaaaagagatgtatcgtctgtcgctcaaatcaacctctctgggccagctgcacgcgttgcacaagatttgggtctcctaacacatctctgttgtacaaacatagacatcagattgctctacaaacgagtgttgtacatgttgattacatcgtcatcagcatctttgagcttgtaacttatgctgtcttttatgtttttatccatttgttatttattttttaaaatctctgggatgacttacatgctgattgtaaatttgcaattgtagtaatagttgtggaatgtgttgtaacttac</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0873800, RefSeq:Os01g0873800