Os01g0875500

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Revision as of 05:13, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0875500| Description = Similar to Beta-galactosidase (EC 3.2.1.23)| Version = NM_001051499.1 GI:115441368 GeneID:4324777| Length = 6847 bp|...")
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Gene Name

Os01g0875500

Description

Similar to Beta-galactosidase (EC 3.2.1.23)

Version

NM_001051499.1 GI:115441368 GeneID:4324777

Length

6847 bp

Definition

Oryza sativa Japonica Group Os01g0875500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:39750585..39757431

Sequence Coding Region

39750625..39750825,39750903..39750998,39751096..39751208,39751327..39751393,39751479..39751571
,39751683..39751826,39752269..39752357,39752500..39752605,39752812..39752899
,39752983..39753101,39753374..39753538,39753810..39753994,39754156..39754256
,39754548..39754657,39754875..39754982,39755184..39755294,39755379..39755590
,39755675..39756011,39756355..39756465

Expression

GEO Profiles:Os01g0875500

Genome Context

<gbrowseImage1> name=NC_008394:39750585..39757431 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:39750585..39757431 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgggcgcctcctcctacttctcgttgcggaggctactcctcctgctgctgccgctggtaccgttgctcggcgccaccaccgccgccgcagcgggcgccaactcgagcgtcacgtatgaccaccgctccctcatcatctccggccgccgccgcctcctcatctccacctccatccactacccccgcagcgtccccgagatgtggccgaagctggtggccgaggccaaggacggcggcgccgactgcgtcgagacctacgtgttctggaacggccacgagcccgcccagggccagtactacttcgaggagcggttcgatttggtgcgattcgcgaagatcgtcaaggacgccgggctgtacatgatcctgcgcattgggccgttcgtcgccgcagaatggaccttcgggggcgtgccggtgtggctgcattacgcgcccgggacggtgttccggacgaacaatgagccgttcaagtctcacatgaagagattcacgacgtacattgtggatatgatgaagaaagaacaattcttcgcttcgcagggtgggcacatcatcctagctcaggttgaaaatgaatacggagatatggaacaagcgtacggagctggtgccaagccatatgcaatgtgggcagctagtatggctctggctcagaatactggtgtcccttggatcatgtgccagcagtatgatgcgcctgatccagtgataaacacttgcaattcattctactgtgatcaattcaagccaaattcaccaaccaagccaaaattttggactgagaattggccaggatggttccagacctttggcgaaagtaatccccacaggccccctgaagatgttgcattttctgttgcacgtttttttgggaaaggtggcagccttcagaattactatgtgtaccatggtggaacaaatttcggtcgcactactggagggccattcattactactagctatgactatgatgcaccgatcgatgaatatggccttaggagacttccgaaatgggctcatctaagggaccttcacaaatctatcaaattgggcgagcataccctgttgtatggtaattcgtcatttgtttctctggggcctcaacaagaggctgatgtttacactgatcaatcaggaggatgtgttgcattcctttctaatgttgattcagaaaaggacaaagttgttactttccagagccggtcgtatgatcttcctgcttggtcggtcagtatcctgcctgactgcaagaatgtggcgttcaacactgcaaaggtgcgatctcaaactctgatgatggatatggtccctgcaaatttggaatcatcaaaagttgatgggtggagcattttcagagagaaatatgggatttggggtaatatcgacttagtccgaaatggatttgtagaccatattaatacaacaaaagactctactgactacctatggtacacaacaagttttgacgtagatggaagtcatctggcaggtggcaaccatgttcttcatattgaatccaaaggccatgctgttcaggctttcctgaacaatgagcttataggtagtgcatatggtaatggctcaaaatcaaatttcagcgtggaaatgcccgtcaatttgagggctgggaagaacaaactttccctattgagtatgactgttggtttgcaaaatggaggacccatgtacgaatgggcaggagccggcattacaagtgtgaagatctcaggaatggaaaacagaataattgacttgtcttccaataaatgggaatacaagattggattggaaggggaatattatagtttgttcaaggctgataaggggaaggacataaggtggatgccacagtctgagccaccaaaaaatcaaccaatgacatggtacaaggtaaacgttgatgttccccaaggagatgatccagttggattagatatgcagtctatggggaaaggcctggcttggttgaatggaaatgccattgggaggtattggcccaggataagtcctgtcagtgacaggtgtacttccagttgtgactatagaggaacgttttctccaaataagtgcaggagaggatgtgggcagccaactcaaagatggtaccatgtcccacggtcatggtttcatccatcaggaaacacccttgtgatttttgaggagaagggaggggatcctacaaagatcacattctcaagaagaactgtggcaagtgtgtgctccttcgtgtcagagcactacccttccattgacttggaatcctgggataggaatacccaaaatgatggtagagacgcagcaaaagtacagttgtcttgccccaagggtaaaagtatctcttctgttaagtttgtgagttttggaaaccccagtggaacctgcagatcttaccaacaaggaagctgccaccatccgaactcaatatctgttgttgagaaggcctgtctgaacatgaatggctgtaccgtctccttgtcagacgagggatttggagaagatttatgccctggggtcaccaaaacacttgcgattgaggcagactgctcttaa</cdnaseq>

Protein Sequence

<aaseq>MAGASSYFSLRRLLLLLLPLVPLLGATTAAAAGANSSVTYDHRS LIISGRRRLLISTSIHYPRSVPEMWPKLVAEAKDGGADCVETYVFWNGHEPAQGQYYF EERFDLVRFAKIVKDAGLYMILRIGPFVAAEWTFGGVPVWLHYAPGTVFRTNNEPFKS HMKRFTTYIVDMMKKEQFFASQGGHIILAQVENEYGDMEQAYGAGAKPYAMWAASMAL AQNTGVPWIMCQQYDAPDPVINTCNSFYCDQFKPNSPTKPKFWTENWPGWFQTFGESN PHRPPEDVAFSVARFFGKGGSLQNYYVYHGGTNFGRTTGGPFITTSYDYDAPIDEYGL RRLPKWAHLRDLHKSIKLGEHTLLYGNSSFVSLGPQQEADVYTDQSGGCVAFLSNVDS EKDKVVTFQSRSYDLPAWSVSILPDCKNVAFNTAKVRSQTLMMDMVPANLESSKVDGW SIFREKYGIWGNIDLVRNGFVDHINTTKDSTDYLWYTTSFDVDGSHLAGGNHVLHIES KGHAVQAFLNNELIGSAYGNGSKSNFSVEMPVNLRAGKNKLSLLSMTVGLQNGGPMYE WAGAGITSVKISGMENRIIDLSSNKWEYKIGLEGEYYSLFKADKGKDIRWMPQSEPPK NQPMTWYKVNVDVPQGDDPVGLDMQSMGKGLAWLNGNAIGRYWPRISPVSDRCTSSCD YRGTFSPNKCRRGCGQPTQRWYHVPRSWFHPSGNTLVIFEEKGGDPTKITFSRRTVAS VCSFVSEHYPSIDLESWDRNTQNDGRDAAKVQLSCPKGKSISSVKFVSFGNPSGTCRS YQQGSCHHPNSISVVEKACLNMNGCTVSLSDEGFGEDLCPGVTKTLAIEADCS</aaseq>

Gene Sequence

<dnaseqindica>41..241#319..414#512..624#743..809#895..987#1099..1242#1685..1773#1916..2021#2228..2315#2399..2517#2790..2954#3226..3410#3572..3672#3964..4073#4291..4398#4600..4710#4795..5006#5091..5427#5771..5881#tgctcatacgccgtatcgaccaccaccctcgacggcggccatggcgggcgcctcctcctacttctcgttgcggaggctactcctcctgctgctgccgctggtaccgttgctcggcgccaccaccgccgccgcagcgggcgccaactcgagcgtcacgtatgaccaccgctccctcatcatctccggccgccgccgcctcctcatctccacctccatccactacccccgcagcgtccccgaggtatgcaccccaccccgaacgccagcacgcgcgcattgcggtggtactaccggtaacctcgctgctcgtgctcgcagatgtggccgaagctggtggccgaggccaaggacggcggcgccgactgcgtcgagacctacgtgttctggaacggccacgagcccgcccagggccaggtccgggccgcctctccaaaatttgtgatggatttagcatgttcgatccgtgataaacctgtgtgttttgtgtgcgattggtgaatgctgattgcagtactacttcgaggagcggttcgatttggtgcgattcgcgaagatcgtcaaggacgccgggctgtacatgatcctgcgcattgggccgttcgtcgccgcagaatggaccttcgggtttgcctcttcgttatactgatgcagtgtcacgattggttgtagttgtgcagaattatggtgattcgatttctctgggttgatgggtttatccgtttatgtgtgcgtggatgtacaggggcgtgccggtgtggctgcattacgcgcccgggacggtgttccggacgaacaatgagccgttcaaggtgtggcgggcttgtgaatttcgtggcgttttatttggggagtttgcaagtttggtgatggttatactgacatttacttacgcagtctcacatgaagagattcacgacgtacattgtggatatgatgaagaaagaacaattcttcgcttcgcagggtgggcacatcatcctagctcaggtctggacattgtcatactaatcctaattggggcgctgaaacatcaatctgtttctatcaactttgagataggtgtacttcacaattgacggcagaattggtgcactgtaggttgaaaatgaatacggagatatggaacaagcgtacggagctggtgccaagccatatgcaatgtgggcagctagtatggctctggctcagaatactggtgtcccttggatcatgtgccagcagtatgatgcgcctgatccagtggttagtttctaacattcaacacattttgcttaatgaaacatttcaaccatgaattgctccatgaaacatactggcagtcagtgtatggtgtaaaattctttgaaagaccagcacatctgctatattttgtcactgacagtgtatggtataaaatcctttgaaaagttttttcaaaatctgagagattgtggtaggcaaactgaacagtgaacagcagataatctgtggcacttgaaatcgtaacctcgcaattggtgtttttgtactgctatagctatcaggattgtctttccataacgtcttcaagtattcttcccgtcattgtgtgattcataacatcttggcatattcatgtgattgatactgatgtaaataaagtttttgcatatgcagtaacttttcttttgcggttacactcacgcattcaaatttacttttgcagataaacacttgcaattcattctactgtgatcaattcaagccaaattcaccaaccaagccaaaattttggactgagaattggccaggatggtaacgattttgacatattagcaacagactccatctagtacttctcatgtctttatagcacaatatggagttaatattgtagatgttttaaaagagaagctaattgatgtgctgctgcttgtttcttcctatttgaatttaggttccagacctttggcgaaagtaatccccacaggccccctgaagatgttgcattttctgttgcacgtttttttgggaaaggtggcagccttcagaattactatgtggtaattgctgttgcagaagttacattttaatttgataaaggcacactgataattgttttctgttgattgcactaccaaagatttacagtcaagttcaagcatcttgatacatttttagtcatttgaatacaatttgtcagtatgaataactagtggaagctccatatttctgaaagttgaatcaagttttctctatccttttgaagtaccatggtggaacaaatttcggtcgcactactggagggccattcattactactagctatgactatgatgcaccgatcgatgaatatggtttggatttattgctgttattaattccatcaaactattaagcctaaagagttcttagtagtattagttgatctgaaatgcaggccttaggagacttccgaaatgggctcatctaagggaccttcacaaatctatcaaattgggcgagcataccctgttgtatggtaattcgtcatttgtttctctggggcctcaacaagaggtaggttttatcgttataacctttgacctaaatctggtttcaatattatatgaaagcttgcatcaaaacttcttatggatattaacttcaacccatctctgctgtaaggagcattgtacatttaaatgctgcttatgtctaccatactgtaacccattggtgttttaatgcacactgctattcactttttgctcctgtatttatcccctgattaaatcattattttcttctaccaacttatggaattgatagtgtcccatttttgcttgcaggctgatgtttacactgatcaatcaggaggatgtgttgcattcctttctaatgttgattcagaaaaggacaaagttgttactttccagagccggtcgtatgatcttcctgcttggtcggtcagtatcctgcctgactgcaagaatgtggcgttcaacactgcaaaggtatttgattttctatgtcaatggtcttctgaattacaacatgcattgctgcaaaaaatgtttttcttaaaagaaaaaaagccttgtcaaaacaaaacggatagcacccttctcaacaaatggaacatggatagcaaaggaattaaaaaggagcaaaataaatggcaaatatcagaatattttatgcttaatccgagttatataaaaagtgccatattgcacgaagttcttttctcccaaataattgtagctcctggctcttcatctttaggtgcgatctcaaactctgatgatggatatggtccctgcaaatttggaatcatcaaaagttgatgggtggagcattttcagagagaaatatgggatttggggtaatatcgacttagtccgaaatggatttgtagaccatattaatacaacaaaagactctactgactacctatggtacacaacaaggttggtatactgcagtctgtttcatatatactacttctattgcaaatagatatgcatgtaacaatccaaaaaagagatcttagtattgtccatattataagtttttttaactatgaactttcagttaattatgtggtctttattctttgtggaatatgcagttttgacgtagatggaagtcatctggcaggtggcaaccatgttcttcatattgaatccaaaggccatgctgttcaggctttcctgaacaatgagcttataggtttgttgcttacccttactttgctgagagaccatcatcaaatcaccatccaataccattttcagttcagccgaatcttctgaatgcccaatcatttccatataatcaaaatatatccctgaaatgagagttttatataattgtcacctcttcttcttcatctttttttccccaaaaagacaaccatatatatcttcagcagcactttctttgcatatatacactttacagttctcttcaattattgagttcttctgtttaatgtcattactacttgcaaatctttcttaggtagtgcatatggtaatggctcaaaatcaaatttcagcgtggaaatgcccgtcaatttgagggctgggaagaacaaactttccctattgagtatgactgttggtttgcaagtaagtgcctacgtttactgagttttacatacgagtgtatgactaaacttgaggcatatcctttacatgcaaattgctatttatggcatgtcaattgtacccacttttgtcaaaagaaagttctaactgtaccctatagtttgttaagcctgctattttagcttcaagttaaaaatgcttgaatcatctgattgataaaaactgtgtgccttttaagaatggaggacccatgtacgaatgggcaggagccggcattacaagtgtgaagatctcaggaatggaaaacagaataattgacttgtcttccaataaatgggaatacaaggtacaagattgttgaatttgttcagatatttgtgtaatgaactcaattgatgataaagtagtatactgttccttcaaagccattctataatttttctcctctctttctatgtacttgggtttgctttctatgatgacatatccagtatttggggcaaggtgaggtgtaatgtttatgtgaatcttatgtatttgttggtagattggattggaaggggaatattatagtttgttcaaggctgataaggggaaggacataaggtggatgccacagtctgagccaccaaaaaatcaaccaatgacatggtacaaggtagccttcttcggtctatattttccatacgtgtttttctcatcgtactacttgcggtaaactactaatgcaacatacttctaggtaaacgttgatgttccccaaggagatgatccagttggattagatatgcagtctatggggaaaggcctggcttggttgaatggaaatgccattgggaggtattggcccaggataagtcctgtcagtgacaggtgtacttccagttgtgactatagaggaacgttttctccaaataagtgcaggagaggatgtgggcagccaactcaaagatggtatgtgacgatttttggcacagctcacaataccttttttttcatacttctcacatttcacatttctgtttgcatttggtcaaggtaccatgtcccacggtcatggtttcatccatcaggaaacacccttgtgatttttgaggagaagggaggggatcctacaaagatcacattctcaagaagaactgtggcaagtgtgtgctccttcgtgtcagagcactacccttccattgacttggaatcctgggataggaatacccaaaatgatggtagagacgcagcaaaagtacagttgtcttgccccaagggtaaaagtatctcttctgttaagtttgtgagttttggaaaccccagtggaacctgcagatcttaccaacaaggaagctgccaccatccgaactcaatatctgttgttgagaaggtaatatgcacagttcttgcacaaaaagtgcacatctaatctaaaacttgagagcctttgattctgactttctgatatacgtcgatgcatgtggatttagatccatcagttctgacttgtagccatagagcaactggaattatattatgtttttactgttccaaaccagggaacactgggttgggcacataggagggtaaaaactttccatttcaaaggagccatgagttccctatgagttgtccaataactatttctggactgaagttatatggagatcttgatattactgaccatcaaactttataattgtgctgaactgttgtttactttatcttggcaggcctgtctgaacatgaatggctgtaccgtctccttgtcagacgagggatttggagaagatttatgccctggggtcaccaaaacacttgcgattgaggcagactgctcttaaggagtttaactcagcaatgagatccatcgctacagattcgctcatcaacttgaagcttatagtgcttggtacagtagcatactacaacaacttcgaagtgaaatcctacctagatttagattacgacctgttatgagcatgatttggcactttgtttctttgacttctcttttgctcaacaatatgtccaggtacccttgacgggtcgccattgtggatgctaaccatccacccgagcaaaggaattaattgcactgcattcccaggtttgcaatggactactgtatgattcagaaacatgaaggcatgaacgagcttctatgagcccaaaaggaatgggatataatataatatgatatattgcgatgcccatgaaacatttcataattgtcattttcttcgtgtttagacttgctgatatgtagacaccagatcgcactggagaaagttcttggattgctctcttcatgttgtgtcgcgtcatgatatttctggattaacctgtgaatgaatctatggttgaggcagcaggtggtcaacacagtagttcatctctcgttatgattggggagacaaaaataagttgctcactgtgcgggtactgtgatgttgctaagatcacagtgcggaagaaaccactagcttgtggctccattggccgtagattctggataagattaagtaagatctgcattccattccatggcgtacggaatggatgttattaaatctttgattagccatggattaaggagccggggcctttgactggatgccgcttcatgttttccttgtcatgtgagtattatttaggggccctcgaattaagtcctaatcacccacagcctgttcccttcctcttctcccttcttccgtagtggtttcatgactccattgataggccatggtacttgtacagtatcagggaataaataaatattggaggaatcatctccatcgaaaagg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0875500, RefSeq:Os01g0875500