Os01g0916200

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Revision as of 05:18, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0916200| Description = Armadillo-like helical domain containing protein| Version = NM_001051727.1 GI:115441824 GeneID:4324331| Length = 688...")
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Gene Name

Os01g0916200

Description

Armadillo-like helical domain containing protein

Version

NM_001051727.1 GI:115441824 GeneID:4324331

Length

6885 bp

Definition

Oryza sativa Japonica Group Os01g0916200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:41687112..41693996

Sequence Coding Region

41687607..41688617,41688853..41688996,41689788..41689865,41690310..41690426,41690513..41690569
,41691080..41691211,41691313..41691510,41691952..41692062,41692158..41692373
,41692467..41692652,41693178..41693780

Expression

GEO Profiles:Os01g0916200

Genome Context

<gbrowseImage1> name=NC_008394:41687112..41693996 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:41687112..41693996 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagcagctgcggacgatcgggcgggagctggcgatggggtcgcagggagggtgggggcagtcgaaggagttcctcgaccttgtcaagtccatcggcgaggcgcggtccaaggcggaggaggaccggatcatctcgcgggagctggatcacctcaagcgccgcctcgccgaccccgacgtgccccgccggaagatgaaggagctcctcctccgcctcgtctacgccgagatgctcggccacgacgcctccttcggccacatccacgccgtcaagatgacccacgacgagtccctcccgctcaagcgcacgggctacctcgccgtctccctcttcctcgacgagcgccacgacctcgtcatcctcgtcgtcaacaccatacagaaggacctcaggtccgacaactacctcgtcgtctgcgccgcgctcaccgccgcctgccgcctcatcggggaggaggccatcccggccgtgctgccccaggtcgtcgagctgctcgcgcatcccaaggaggccgtgcggaagaaggccgtcatggcgctccaccgattctaccagcgatccccctcatccgtctctcaccttgtctccaacttccgcaagaggctctgtgataatgatcctggggtcatgggtgcaactttatgccccctctatgacctgattttggaagatccaaattcgtacaaggatttggttgttagttttgttaacatcctcaaacaagttgcagagaggaggcttccaacttcctatgattaccaccaaatgcctgcaccatttattcagattaaactattgaaaatacttgcggtgctgggtagcggtgataagcaggcaagtggaaatatgtacatggtcttgggtgacatattcaggaagggtgacactgcaagcaacattggcaatgcaatattgtatgagtgcatatgctgtatttcatccatattcccgaacgctaagatgcttgatgctgcagctgaaacaacatcaaagtttctgaagagtgatagccataatcttaagtacatgggcattgatgctcttggccggttaattaaaataaatccagatatcgcagaagagcaccagctggctgttattgattgcttagaggatcctgatgacactttgaaacgcaagaccttcgagcttctttacaagatgacaaaatcaacaaatgttgaagtgattgttgatcgaatgattgagtatatgattaacatcactgatcaccattacaagacagaaattgcatctcgttgtgttgagctagcagaacaatttgcacctagcaatcagtggttcatccagaccatgaacaaagtctttgagcatgctggagatcttgtcaacatccgagttgcacataatttaatgcgacttattgctgaaggctttggagaggaggatgaaggtgctgatagccaactaagatcgtcagctgtagattcctatctacggattgttggggagccaaagcttccttcttcgtttctgcagataatatgctgggttttgggagaatatggaacagcagatgggaaatattcagcttcatatattattgggaagctgtatgatgtggcagaggcccacccaactgatgacactgtcagggcttatgcaatctccgcaattttgaagatctttgcgtttgaaatcgctcttggaaggaagatcgatatgctacccgagtgccaatcgttgatagatgaattgtcagcttcgcattcaacagacttgcagcagcgtgcatatgagctacaggctttgctaggtttggacaaacaggctgttgagaatgtaatgccagccgatgcaagctgcgaagatattgagatcgacagaaacctctcgtttctaaatggttatgtgcagcaagccattgaaaatggtgctgcaccctacattcctgagagtgaacgctcaggagtggtaagtgttggcaactacaaggcccaggatcaacaagagacatctgcccatgctcttagattcgaggcctatgagctacctccagcagcttcacaggccagtatttccccaactactgacctggttccagttccagaaccaagctactataaggaagatcaccaaatgtcaagatcccagccatcaggcgattctctttctggtgaatttggtctcaaacttcgtcttgatggagttcagaagaaatgggggagaccagcctattcctcctcatctacgccttcaagttcaacatctagtcaacaagcaaccaatggaggcgttagttctgaggtgggagggtcaacaagttcacaggctcgggaatccacatatggttccaagagacagcaggccactgaagtttcagcggaaaagcaacggttggctgcttcactctttggtaaagctgataggaagacccaggctgggcgaaagacagcaaaggagagttcctcaactgagaaagtagctactgctaatgcaacaccgcagccagccaaagagcaagtaatcccttctgccccaccacctgatcttctggatctgggagagccagtttcatcaagtcctccattagctgatcctttcacacagttagaaggtcttctcggaccagcatcagcctctcctgtggtttctgaaaccccagcttcgagcacttcgaaaacaccagatcttatgtcaatcttttcggatgatgtacaaactggagtgaccagtggatccacagaaccatcactcggggtaaatgtggtcgctgcaaagaagggccctagccttcaagatgccttgcagaaggacgcagcggcccggcaagttggtgtgacgccgacagggaacaaccctattctattcaaggacttgttaggctag</cdnaseq>

Protein Sequence

<aaseq>MEQLRTIGRELAMGSQGGWGQSKEFLDLVKSIGEARSKAEEDRI ISRELDHLKRRLADPDVPRRKMKELLLRLVYAEMLGHDASFGHIHAVKMTHDESLPLK RTGYLAVSLFLDERHDLVILVVNTIQKDLRSDNYLVVCAALTAACRLIGEEAIPAVLP QVVELLAHPKEAVRKKAVMALHRFYQRSPSSVSHLVSNFRKRLCDNDPGVMGATLCPL YDLILEDPNSYKDLVVSFVNILKQVAERRLPTSYDYHQMPAPFIQIKLLKILAVLGSG DKQASGNMYMVLGDIFRKGDTASNIGNAILYECICCISSIFPNAKMLDAAAETTSKFL KSDSHNLKYMGIDALGRLIKINPDIAEEHQLAVIDCLEDPDDTLKRKTFELLYKMTKS TNVEVIVDRMIEYMINITDHHYKTEIASRCVELAEQFAPSNQWFIQTMNKVFEHAGDL VNIRVAHNLMRLIAEGFGEEDEGADSQLRSSAVDSYLRIVGEPKLPSSFLQIICWVLG EYGTADGKYSASYIIGKLYDVAEAHPTDDTVRAYAISAILKIFAFEIALGRKIDMLPE CQSLIDELSASHSTDLQQRAYELQALLGLDKQAVENVMPADASCEDIEIDRNLSFLNG YVQQAIENGAAPYIPESERSGVVSVGNYKAQDQQETSAHALRFEAYELPPAASQASIS PTTDLVPVPEPSYYKEDHQMSRSQPSGDSLSGEFGLKLRLDGVQKKWGRPAYSSSSTP SSSTSSQQATNGGVSSEVGGSTSSQARESTYGSKRQQATEVSAEKQRLAASLFGKADR KTQAGRKTAKESSSTEKVATANATPQPAKEQVIPSAPPPDLLDLGEPVSSSPPLADPF TQLEGLLGPASASPVVSETPASSTSKTPDLMSIFSDDVQTGVTSGSTEPSLGVNVVAA KKGPSLQDALQKDAAARQVGVTPTGNNPILFKDLLG</aaseq>

Gene Sequence

<dnaseqindica>5380..6390#5001..5144#4132..4209#3571..3687#3428..3484#2786..2917#2487..2684#1935..2045#1624..1839#1345..1530#217..819#atctcccccttccttccctacaccgaaagcccgaaacccaccttgcctcgcctcgcctcgccggatccagatctccaccgcctcgcctcgccgcgccgccaccaacccactcgccgtcgccgtcgccggcggcggatcggccccacatcacctcggcctccccgagcaaaccggcgggggacgcccccgggcaacgggcgggcgaagaggggcgcaatggagcagctgcggacgatcgggcgggagctggcgatggggtcgcagggagggtgggggcagtcgaaggagttcctcgaccttgtcaagtccatcggcgaggcgcggtccaaggcggaggaggaccggatcatctcgcgggagctggatcacctcaagcgccgcctcgccgaccccgacgtgccccgccggaagatgaaggagctcctcctccgcctcgtctacgccgagatgctcggccacgacgcctccttcggccacatccacgccgtcaagatgacccacgacgagtccctcccgctcaagcgcacgggctacctcgccgtctccctcttcctcgacgagcgccacgacctcgtcatcctcgtcgtcaacaccatacagaaggacctcaggtccgacaactacctcgtcgtctgcgccgcgctcaccgccgcctgccgcctcatcggggaggaggccatcccggccgtgctgccccaggtcgtcgagctgctcgcgcatcccaaggaggccgtgcggaagaaggccgtcatggcgctccaccgattctaccagcgatccccctcatccgtctctcaccttgtctccaacttccgcaaggtccaaactaaatccctcccatttcgtttcccaactgaaatgaacgtagaataagtcgtcctcagtcatatattgtctcaattctgaaatgcacactcggctacaatcattctatcagtcctactatggttcacatttctgtgtttaatttgtatatatgtctgtaattgcatatgatgcagctagctgttttctccaattacatttttagccacttatttaacctagaaatgtgacttttgctttgttttgttcatgccaatttaagataagttagctagtcttaggttctgtctacaagagttatggattcgattaacaccaaagatgcaaatttgtttactatttgtttgtgtttccatgttagaataccagtgtttattgtcttaaattgtgtcttcgtatctaccttgagcctcaattgggatttccagcaactgtagcctgtggggtttcccaactgttagtgaagcacatatttgtttctcagagagatgcttagtgttgatcgctattattttgcagaggctctgtgataatgatcctggggtcatgggtgcaactttatgccccctctatgacctgattttggaagatccaaattcgtacaaggatttggttgttagttttgttaacatcctcaaacaagttgcagagaggaggcttccaacttcctatgattaccaccaaatgcctgcaccatttattcaggtatgtgaactctattgagcttcaacttcctatgtttggagtcttcaattggcaccatcttatgtcattagattttactgttcttatttgcagattaaactattgaaaatacttgcggtgctgggtagcggtgataagcaggcaagtggaaatatgtacatggtcttgggtgacatattcaggaagggtgacactgcaagcaacattggcaatgcaatattgtatgagtgcatatgctgtatttcatccatattcccgaacgctaagatgcttgatgctgcagctgaaacaacatcaaagtttctgaaggtgcacacaaagttcttatgtgagacataagtgattttcatgatgttgtgtccataggaaattaacctgcttcattaactcttttatgtttgcagagtgatagccataatcttaagtacatgggcattgatgctcttggccggttaattaaaataaatccagatatcgcagaagagcaccagctggctgttattgattgcttagaggtgaggaatatagcaaaattcagctcttgcgtgttcatggaaaatattgggtttttagtatgttgcttccatgcgtatattcctgttgcatgctgcaagagaatgaagctaagacttttttactgaaatcatgctatagttgcagaaattaattttacgaagaatgctgatttgtaattcatttcacgtttccctgcagaaagaccaaaattatgttagctgaagaagcacttataattttcagaagattatattgtgttgtttgatacaatatcgctgacctagttgctggcttgttctgttcttatggcatcagttttgtggttttaatttgctacctcagtagatgcatgtcactgtgtcatcatctttagttggatgtgttatacttttcacactagcccttcttgtttctcactcagtgcggtttcttttgaacaggatcctgatgacactttgaaacgcaagaccttcgagcttctttacaagatgacaaaatcaacaaatgttgaagtgattgttgatcgaatgattgagtatatgattaacatcactgatcaccattacaagacagaaattgcatctcgttgtgttgagctagcagaacaatttgcacctagcaatcagtggttcatccaggtgacagcatcagtctatgcatgtttgttgttgagcacttaatgtattttctactaatatttttaacagaagatcctttggttctactaattatttaccagaccatgaacaaagtctttgagcatgctggagatcttgtcaacatccgagttgcacataatttaatgcgacttattgctgaaggctttggagaggaggatgaaggtgctgatagccaactaagatcgtcagctgtatgtactctggactaatcttaattctttgctgacatgttccccttgctaaacataagtattgtgaataaacaccttatactttaattattctctgtgaaagtgcatctaagcccctaattattttggtggttaatgacaatccaattagtgaggactaatgcttgcaatttagaatgtatgaaggaatattagtccggcatgagtctattcgccccccccccctcctctaggcctaagtgaccctttcactctgattggttaatttataatcgaagtaaggggaaaagcttatgttatcctctggttacgcatgatgaatcaacctgtaaaccagatgtaaattccccacctaccattcagatatggactaaagtgaaccagtgcatgtatcaattcctgctgtttcaacttgaaaagttctcatggtgaacttgaatttgatgcatgattcttaacttagttcactttccctggtatgttagtttacactttgttttccctgaacaggtagattcctatctacggattgttggggagccaaagcttccttcttcgtttctgcaggtgattttaatttcctgttttcttcttatatcatactccgtaccatgttttctgtggtagattatgttgattcattctactttcagataatatgctgggttttgggagaatatggaacagcagatgggaaatattcagcttcatatattattgggaagctgtatgatgtggcagaggcccacccaactgatgacactgtcagggtatgctcttgtagtttagcttttgttccactgttattacatgtggcccattgctactgtgcatgctctgtgttgaaatattataatatagatccaagttgatcattactcgacattttcttgcgcaattactatgatcaattgccatgaaaatcagaacttgtaatttgaaatgtctcagggtacattgttgttgggtaacccagtaatccattttgtgggtagtttgatccattagtccaatcaattatagtagcctataatatatatatccaattatatattatatactgttataatctggacccaccttgatcaactgtatagatcttttgttttctctgattaatgttctacttccttatccttgagaaaatcttttttgtacatctaattgatttattgacatgtcctgctgtttgttattcggtgttcctattcaaggcttatgcaatctccgcaattttgaagatctttgcgtttgaaatcgctcttggaaggaagatcgatatgctacccgaggtaaatgaaaatcttcactgtttggattgtctcacttatcatttttcatgtcaaattgtcattagctttcaagccaaaccattgtttattacatatagcttcacatgtgcagttgtgcaccgaaagagggaattatttttcatgagactaaagttacatgaaagctatacttgcactaactgtaaattatgctcctccctaggattatatgtttatcagttatcacatgcatttcatacccaagccgaatttggtgcattttcctttgttggaatttacatctataatgctagttatttaagtttatgagcaaatatgctaatacaaacttggaacagtcatctcgtgctgttcagtttgagcaccactagctataaaaaaagtttatgagcaaatatcctaatacaaacttggaacagtcatctcggaaaactcaagactatggttaacttgccatctaccctatattatctctgtgtttcataattctgtgacagcctttttctgtgaataatttcgttatttgatataatgttgtaaagaagcaaacctttacttctgatttttaaaacatcattcaccactggatgatgtaaagcaatcatgttccatatgactggaaagcacagagacatatttgatattaatactgtccacatgattgggaggtccagaatagaaaacatcaacactattgcttaccatgaagtggcaaaactctcttcctgtagaattcgtgtactctattgtttgtaggtaaatctttataaatcatctccgatcctttgcagtgccaatcgttgatagatgaattgtcagcttcgcattcaacagacttgcagcagcgtgcatatgagctacaggctttgctaggtttggacaaacaggctgttgagaatgtaatgccagccgatgcaagctgcgaagatattgaggtactgctatccctttcttggaaccgagcctaatgcatgaaaacttgattttatctgcttcctcatatgcataaaatcctggtgacagcacagaaacaatctggcacttacatatatttttaatatgttgcactatttctacataagcacacaactttaaagcaaaagttataaattgaaccaagcgtaagagtaaaagggcaaccttttcacggatactaaatttatgttgcagatcgacagaaacctctcgtttctaaatggttatgtgcagcaagccattgaaaatggtgctgcaccctacattcctgagagtgaacgctcaggagtggtaagtgttggcaactacaaggcccaggatcaacaagagacatctgcccatgctcttagattcgaggcctatgagctacctccagcagcttcacaggccagtatttccccaactactgacctggttccagttccagaaccaagctactataaggaagatcaccaaatgtcaagatcccagccatcaggcgattctctttctggtgaatttggtctcaaacttcgtcttgatggagttcagaagaaatgggggagaccagcctattcctcctcatctacgccttcaagttcaacatctagtcaacaagcaaccaatggaggcgttagttctgaggtgggagggtcaacaagttcacaggctcgggaatccacatatggttccaagagacagcaggccactgaagtttcagcggaaaagcaacggttggctgcttcactctttggtaaagctgataggaagacccaggctgggcgaaagacagcaaaggagagttcctcaactgagaaagtagctactgctaatgcaacaccgcagccagccaaagagcaagtaatcccttctgccccaccacctgatcttctggatctgggagagccagtttcatcaagtcctccattagctgatcctttcacacagttagaaggtcttctcggaccagcatcagcctctcctgtggtttctgaaaccccagcttcgagcacttcgaaaacaccagatcttatgtcaatcttttcggatgatgtacaaactggagtgaccagtggatccacagaaccatcactcggggtaaatgtggtcgctgcaaagaagggccctagccttcaagatgccttgcagaaggacgcagcggcccggcaagttggtgtgacgccgacagggaacaaccctattctattcaaggacttgttaggctagaatatacagcatatgttcagcgtgctcaaattgggtaagtggagtttgcctccaagatggtcttgattgcctgatcggtgaaccagtaatgaatgatgctgttcgatcagcacagggcacatgagggcatgaggtaaatttggttttgattcacaggacacgaccttttaccctcccaattgggagaaggtaggtttgggatgagatgtggatggttgcgggtctttttcctgttgcgtttttcacatggtaatttcttgtcgagacttagtgtacatgtgtttattacatgatgtgtaatttgtacatgatgagaccgtggtccagaagcgtgtgccggcgctttttttcggttcatctggcagggagtatatgttttgagatttacccacattggatatacagtagctgctgggcactagaaactcggttgccacttcctctgaaactggctggaataataaaatgtaagttttttcttccccttacgctttc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0916200, RefSeq:Os01g0916200