Os01g0952600

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Revision as of 05:22, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0952600| Description = Similar to LacZ (Fragment)| Version = NM_001051956.1 GI:115442282 GeneID:4325748| Length = 8103 bp| Definition = Or...")
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Gene Name

Os01g0952600

Description

Similar to LacZ (Fragment)

Version

NM_001051956.1 GI:115442282 GeneID:4325748

Length

8103 bp

Definition

Oryza sativa Japonica Group Os01g0952600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:43749530..43757632

Sequence Coding Region

43749844..43749976,43750076..43750312,43750590..43750739,43751385..43751463,43752096..43752279
,43752733..43752798,43753171..43753407,43753499..43753705,43753823..43754126
,43754200..43754359,43754454..43754562,43754967..43755102,43755212..43755267
,43755344..43755643,43755719..43755841,43756221..43756922,43757071..43757241

Expression

GEO Profiles:Os01g0952600

Genome Context

<gbrowseImage1> name=NC_008394:43749530..43757632 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:43749530..43757632 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgtagcttctgccagtgcactgttttccgccaagaatcttccgcataaaccctgggaggacccgtcattctttaggtggagaaagcgggaggctcatgtgccgttgcgctcacatgacacacctgaaggagccctcaagtattggcatgaacggaggaatgtgaactatcttaattctgactctgctgtttggaatgatgacgcggttcgtggtgccctggaaagtgctgcgttttggtccaagggcttgccatatgtccagactctaagtggatactggaagttccttttggcttcctcgccagaatctgttccagagaaattctatgatgcctacttcaatgattcagattgggaggctttgccagttccctcaaactggcaaatgcatgggtttgaccgtccaatctacacaaatgtcacttatcctttcaccatgaacccgccatttgtgccaaatgataatcctactggctgttataggacggtttttcgcatcccaaaagagtggaaaggtcgaagaatcttgttgcactttgaagctgttgattcagcgttttttgcttgggtaaacggcgttcctgttggatatagccaggacagcaggcttcctgctgagtttgagatcacagatttctgccatccttgtgactcagaaaaggaaaatgttcttgctgttcaagtgatgaggtggagtgacggttcctatcttgaagaccaggaccattggtggctatctggtattcacagggatgttctactagtatcaaagccacagatctttattacagattattttttcaaagcaaccttggatgaaggcttccgtgtagctgatattgaggttgaggtggaaattgactcacaaaagcaggatcgggagcatgtctcaactttgtctattgaagcaacattgtatgacaattatggacctgctgatgttttaacttctgatatgtctgctgctagtgtggccaatttgaagttgaagccagcttcaagaccaaaacactgttatggttttcatggttatgttcttggtggaaaagtagaaaatccaaaactttggtctagtgaacatcccaacttatacactcttgttgttgtccttaaagattccaacgggaagctcattgagtgtgaatcatgccaagtaggaatccgtaatgtcgtcctggcacacaagcagatgcttgtcaatggatgtcctgttgtaataagaggtgtcaacagacatgagcatcatccacgtgttggaaagacaaatttagaagcttgcatgattaaggatctggttttgatgagacaaaacaacattaatgctgttagaaacagccattatccccaacatccaaggtggtatgagctgtgtgacatttttggactttatgtaattgatgaagccaacatcgagacgcatggctttgatgaatctagccatttcaaacatcctacacttgaacccttctgggcaagtgctatgcttgatcgtgttgttggtatggtggagagagacaagaatcatgcatgcattatagtatggtccttgggaaatgaatcttcgtatggaccaaatcactcagccatgtctggctggattcgtggaaaggacccgacaaggcccatccattatgaaggaggtggttctagaacatcctccactgatattgtatgcccaatgtacatgcgtgtctgggatattcttaagatcgcacaagacccttctgaaaataggcccctcattctttgcgaatattcacatgctatgggaaacagtaatggaaatattgatgcatattggatggccatagacaacactgttggactccaaggtggttttatatgggactgggtcgatcagggtttactaaaggaagatgctgatggatctaaaaactgggcatatggtggcgactttggagacactccaaatgacttgaatttttgtcttaatggcattgtatggcctgatcggacaattcacccagctgtgcatgaagttaaatatttataccagcctatcaaaataacaatgatggataacatgcttaagattgaaaacgtacatttttttgagacaacagaagctttggacttcagttggctacttcaaggagatggctgtgctttgggctctggttcacttaatgtcccatccatagcaccacagagtactcatctgatcaatatgaagtcatcaccttggtttactatttggagtacttgtgtcgtaaaagaaatatttttgtccattaacgtgaaattgaggtaccaaacacaatgggccaaagatggccatatcttggcttcagcacaaatttgtttacctccgaaaaaaggctttgtccctcatgcgatagcactgcccaggagctctttggtttcggaacgtgttggtgatcatgtactcatcagcaaaagtaatgcctggcaaatcaaagtaaacagtatttcaggaacaatcgatagttggaaggtcaacaacattgagcttatgagcaagggaatacacccatgcttttggcgaacaccaactgacaacgacaagggaggcttctacaccaagccctatgtttcaagatggagagaagcttctctcgacaacatctcgttctacagcagccagttttctctgaaggaattgccagaccaaaccgtcgagatctccaccatctactacggtcttcctgggaatcaaccaaagcctgatgaaacctctctctcagacgaatccgagtccgtcctcttccgggtgcagatgcgcggccggatctacgactccggcgacgtgatcctggactacgaggtgagccccaagaacgacctgcctcctcttcctcgcgtcggcgtcgtgttcaacgccgacaagtccctgagccgtgcaaaatggtacgggagggggccattcgagtgctacccggaccggaaggccgccgcgcacgtcggcgtgtacgagagcggcgtcgacgagctgcacgtgccgtacattgtccccggcgagtgcggcggccgggctgacgtccggtgggtggcgctccaggacgccgacgggttcggcctcttcgcgtcggcctacggcgagtcgccgccgatgcaggtgagcgccagctactatggcgccgcggagctcgaccgcgcgacgcataaccacaagctcgtcaagggagacgacatcgaggtgcatcttgatcacaagcacatggggctgggaggggacgacagctggtcgccgtgcgtgcacgagcagtacttgctgccgccggcgagatacgccttctcggtgaggctgtgcccgttgctgccgtcgtcgtcgtgccatgacatctaccactctcagctaccctgttga</cdnaseq>

Protein Sequence

<aaseq>MAVASASALFSAKNLPHKPWEDPSFFRWRKREAHVPLRSHDTPE GALKYWHERRNVNYLNSDSAVWNDDAVRGALESAAFWSKGLPYVQTLSGYWKFLLASS PESVPEKFYDAYFNDSDWEALPVPSNWQMHGFDRPIYTNVTYPFTMNPPFVPNDNPTG CYRTVFRIPKEWKGRRILLHFEAVDSAFFAWVNGVPVGYSQDSRLPAEFEITDFCHPC DSEKENVLAVQVMRWSDGSYLEDQDHWWLSGIHRDVLLVSKPQIFITDYFFKATLDEG FRVADIEVEVEIDSQKQDREHVSTLSIEATLYDNYGPADVLTSDMSAASVANLKLKPA SRPKHCYGFHGYVLGGKVENPKLWSSEHPNLYTLVVVLKDSNGKLIECESCQVGIRNV VLAHKQMLVNGCPVVIRGVNRHEHHPRVGKTNLEACMIKDLVLMRQNNINAVRNSHYP QHPRWYELCDIFGLYVIDEANIETHGFDESSHFKHPTLEPFWASAMLDRVVGMVERDK NHACIIVWSLGNESSYGPNHSAMSGWIRGKDPTRPIHYEGGGSRTSSTDIVCPMYMRV WDILKIAQDPSENRPLILCEYSHAMGNSNGNIDAYWMAIDNTVGLQGGFIWDWVDQGL LKEDADGSKNWAYGGDFGDTPNDLNFCLNGIVWPDRTIHPAVHEVKYLYQPIKITMMD NMLKIENVHFFETTEALDFSWLLQGDGCALGSGSLNVPSIAPQSTHLINMKSSPWFTI WSTCVVKEIFLSINVKLRYQTQWAKDGHILASAQICLPPKKGFVPHAIALPRSSLVSE RVGDHVLISKSNAWQIKVNSISGTIDSWKVNNIELMSKGIHPCFWRTPTDNDKGGFYT KPYVSRWREASLDNISFYSSQFSLKELPDQTVEISTIYYGLPGNQPKPDETSLSDESE SVLFRVQMRGRIYDSGDVILDYEVSPKNDLPPLPRVGVVFNADKSLSRAKWYGRGPFE CYPDRKAAAHVGVYESGVDELHVPYIVPGECGGRADVRWVALQDADGFGLFASAYGES PPMQVSASYYGAAELDRATHNHKLVKGDDIEVHLDHKHMGLGGDDSWSPCVHEQYLLP PARYAFSVRLCPLLPSSSCHDIYHSQLPC</aaseq>

Gene Sequence

<dnaseqindica>315..447#547..783#1061..1210#1856..1934#2567..2750#3204..3269#3642..3878#3970..4176#4294..4597#4671..4830#4925..5033#5438..5573#5683..5738#5815..6114#6190..6312#6692..7393#7542..7712#ggcagcaacagatcgctcgcctccccgtctcctcgcccgccgccttcgccgatctccatccggcgagcatccctcccgccgccgtcctgctgctgcttccgccgccggtgagcacacgcacatcctctttctcatctcttcgccttaaccttagtactagaaacaaacaacagtctgttttcacctgaaaatagtttagggcgagtgaggtgaggtgttcttcttatcgagtttcatctccatgttgctgcaggaggggagggatatgtgcctgtgaaaaatcggaggaaagggggtataaatctttgaccataatggctgtagcttctgccagtgcactgttttccgccaagaatcttccgcataaaccctgggaggacccgtcattctttaggtggagaaagcgggaggctcatgtgccgttgcgctcacatgacacacctgaaggtagagattgcagcactgaacccagaaccactatgtaggtagatagaagatttggttgtacagtgattttcggattgatttgttttctcttgtcaataggagccctcaagtattggcatgaacggaggaatgtgaactatcttaattctgactctgctgtttggaatgatgacgcggttcgtggtgccctggaaagtgctgcgttttggtccaagggcttgccatatgtccagactctaagtggatactggaagttccttttggcttcctcgccagaatctgttccagagaaattctatgatgcctacttcaatgattcagattgggaggctttgccaggcatgcatgctactacatcattacttgcttttattagatgcctttagttgatattgttctcattttttagtcagtagtgttcagtgtttgcttatatagcatcagctattatttcagtctcactgtaaagcttctagcttctagtgttttatacacttgaaacaagacattttactgtcatttagtcaaaatgttccatgacaaatattctagaatttcctcttattgttcatatcgtttgaagtttatactcaaacgaacatgtgcttggttgcagttccctcaaactggcaaatgcatgggtttgaccgtccaatctacacaaatgtcacttatcctttcaccatgaacccgccatttgtgccaaatgataatcctactggctgttataggacggtttttcgcatcccaaaagagtggaaaggtatgatatgtacttatcattcgttttcttattcttctgttcttatgcacagcaagtcataaaggggccagtgaccatgttttaaagtccaaaatggattcccctttctgctatggttttccttgttgcattgcagctagcaaaaacatccttatctaagaagaataatacaaaatatgattgatatgctcaagaaagttagatttctttgtgccctgctgatggtaacgtcagggttcattaaattgaagttttgttagtgacaagtgccaacaacatcaagagaggattttaactatagttgcttcatcagcttaaaaataaaatgttaatagtgactaccctgtcgtcaagttccctatccaggacttaccaaatcctactgtgcatttgttgaagaatttattggtggtatagttattgattatcgccttggactctctcacatatttgattttctgacagagtatatgttgtgtgtatggtgcagtgtttgatgcttcttatgacatgctctaaacttttctcgtatgcatgcatagtgtcttttttttctctaataatcacagtaatgcagctggcatttgactgttgtcccctaatgttcctgttctatattaaacagttctgggttgattgtgataggtcgaagaatcttgttgcactttgaagctgttgattcagcgttttttgcttgggtaaacggcgttcctgttggatataggtatggcacaaacaatgcattgcattgatttattacttgtattttctcaatttctgaaaaatgttccagtgatctatcaagttagtaccatttataaaagaaaactacttcccttttcacgtgtttactgctaattggttttatcaagtctgttatcttcttcgattatatgattatcagactcaacatttgcttgtgctcactaaaagtttccttagatagcagaatggaatgcatgaatagttttggcagcacaaactacatggaataggatccataattttggtacatataggcctcttcaaatttttcatttatcatctttggaaattggaatcaccaaaatatacttattttcaagaatcctggatttcccctaaatcttctacttgtgtcttcctgttatcagaaatgacactctgttcttctgactatggtttagttggactatttagtagctcgattgtattgattttgtattttatgatggactatggactgctattctactgaatattacaaaattaaaggtgtttagacttcttgagggatgatgattttactaacatggtcatgtagaaaatagactgttcatctagagaataaacagtttgcttgatgtgttaatgcagccaggacagcaggcttcctgctgagtttgagatcacagatttctgccatccttgtgactcagaaaaggaaaatgttcttgctgttcaagtgatgaggtggagtgacggttcctatcttgaagaccaggaccattggtggctatctggtattcacagggatgttctactagtatcaaagccacaggttacttctctagttttgctcatgcaatattgaacgaattctttcccttttgcaatgaagtgaatggttagctgagcttatgacattttcttcgtctcagggttttagtactttaatataataacaactacataaccatgaatccactgtcatgtgctcactctaacaagaaaacacggtatacacagttacagtgaaaaaaaggggtgtcttaacttgttgaacttgattagacctgaatactcatggaagcaaatatttaagtcagaaaaagattgttattccactggcattggttgacaataggtcatattattaacatgttctttttgtcaaactcctgacatgcacactgcaacatcatttgtgattttctacatctgttttacttcttgaagagattccttatcatccatggaaatgctagttaacaagctaaaattttgtttacagatctttattacagattattttttcaaagcaaccttggatgaaggcttccgtgtagctgatattgaggtaattgtgctagctatgcgtgcagggttgtgcacttctgcagcatgatagtgcaaatacaggaatagtgtacaaggttgcaaaccttttttttgcttgccgtttcctatccattcttttgggtcagaatattaatgtaagcttcaagattatttattataataatgttattaattattaatagcaaactgcctatttcaatagtccagatggtatagtgctgactgatgcacgagtccagtaaacactcaatctcattgttctgtatttgtattcagttactgtacttctgaatcagcattcccaaaacaaaagtaagatagggttggcaattccactacttcaaaaggtttgtgccgttccatatgccaggttgaggtggaaattgactcacaaaagcaggatcgggagcatgtctcaactttgtctattgaagcaacattgtatgacaattatggacctgctgatgttttaacttctgatatgtctgctgctagtgtggccaatttgaagttgaagccagcttcaagaccaaaacactgttatggttttcatggttatgttcttggtggaaaagtagaaaatccaaaactttggtctagtgaacatgtaagagatctaatacaagggaaatatcattaatttttatttcaatcgtactgtttgaaactgtcttataactatattttctttccaacagcccaacttatacactcttgttgttgtccttaaagattccaacgggaagctcattgagtgtgaatcatgccaagtaggaatccgtaatgtcgtcctggcacacaagcagatgcttgtcaatggatgtcctgttgtaataagaggtgtcaacagacatgagcatcatccacgtgttggaaagacaaatttagaagcttgcatgattaaggtagctctcttctgtcaactgtcatatctgaagacatttcgtattactatctctttggctcgtttttttttctcccaggctgttttcaggtattaactatttatttatttgtgacaggatctggttttgatgagacaaaacaacattaatgctgttagaaacagccattatccccaacatccaaggtggtatgagctgtgtgacatttttggactttatgtaattgatgaagccaacatcgagacgcatggctttgatgaatctagccatttcaaacatcctacacttgaacccttctgggcaagtgctatgcttgatcgtgttgttggtatggtggagagagacaagaatcatgcatgcattatagtatggtccttgggaaatgaatcttcgtatggaccaaatcactcagccatgtctggtaaaatattcttcactgtgatagttcagttaatgatattttttgacgcatctaagagatcacattcttgtaggctggattcgtggaaaggacccgacaaggcccatccattatgaaggaggtggttctagaacatcctccactgatattgtatgcccaatgtacatgcgtgtctgggatattcttaagatcgcacaagacccttctgaaaataggcccctcattctttgcgagtatgttcaatgcagcctcacatgttaacttgttccccttttttgtattaaaattccagaaatgttaaagaaaattttccattttgttttcaagatattcacatgctatgggaaacagtaatggaaatattgatgcatattggatggccatagacaacactgttggactccaaggtggttttatatgggactgggtcgatcaggttacaaacaattttcacttcttaagccccttttatttgcattttagcatgccatcccctggaatttctgtttgcatgtttattgtttaagactgcaagggatccatatgcgaggtttcctaggtggagcggtaaatcaagttatggccaggttctttgattctttgtttattcgataaaatagatacatggccgtaaaagttaactttctttgtcttctgctacatagaggttgcatttgcataagacttttatcatagcataagtcaatgtcaaggctgtcaagctaatatagaacaatggtacacaaaagtgaagtgccaaaaaaattgaccgttgacttctacctgtttataaatgctgtaagctactttcacaatattattctccaatgttcatttcagggtttactaaaggaagatgctgatggatctaaaaactgggcatatggtggcgactttggagacactccaaatgacttgaatttttgtcttaatggcattgtatggcctgatcggacaattcacccagctgtgcatggtaactcgaaatacaatgtttattttgttaatatatgttgtgaacataagatccctatttcctatttctagatgtgatactaattactgaattgactctggttttgcagaagttaaatatttataccagcctatcaaaataacaatgatggataacatgcttaaggtaactctggttgccatttattgagctgttttcttgcatacgtagttgatctaaatgatttattattatcatgcagattgaaaacgtacatttttttgagacaacagaagctttggacttcagttggctacttcaaggagatggctgtgctttgggctctggttcacttaatgtcccatccatagcaccacagagtactcatctgatcaatatgaagtcatcaccttggtttactatttggagtacttgtgtcgtaaaagaaatatttttgtccattaacgtgaaattgaggtaccaaacacaatgggccaaagatggccatatcttggcttcagcacaaatttgtttacctccgaaaaaaggctttgtccctcatgtacgttcttcaacctcattttggttgctacttcttctgaattgtcttattcttccagctaactaccattttcaggcgatagcactgcccaggagctctttggtttcggaacgtgttggtgatcatgtactcatcagcaaaagtaatgcctggcaaatcaaagtaaacagtatttcaggaacaatcgatagttggaaggtgagactaaaatggatgggtttcctttgctttattgttctgtttgcatatttgtttgatcatctttgatctaggaagtaatacctttttgatctaagcaatttttctttgcaatctaacgaactgttttcccttttatggtttggtttaatccgcaatagctacatttgtctgaactccaaaattgttgatgtactagttttctgtttgaactgaaagtaactgcagacgagctttcccatcggcagtttctgcggagtcttgttactctgtcaaacttagccaagttttgaaatttgctccagactgtttatatacactgtcagttttaatttccttatcaaaatctggaactcattatacttcctctgaaccgtaggtcaacaacattgagcttatgagcaagggaatacacccatgcttttggcgaacaccaactgacaacgacaagggaggcttctacaccaagccctatgtttcaagatggagagaagcttctctcgacaacatctcgttctacagcagccagttttctctgaaggaattgccagaccaaaccgtcgagatctccaccatctactacggtcttcctgggaatcaaccaaagcctgatgaaacctctctctcagacgaatccgagtccgtcctcttccgggtgcagatgcgcggccggatctacgactccggcgacgtgatcctggactacgaggtgagccccaagaacgacctgcctcctcttcctcgcgtcggcgtcgtgttcaacgccgacaagtccctgagccgtgcaaaatggtacgggagggggccattcgagtgctacccggaccggaaggccgccgcgcacgtcggcgtgtacgagagcggcgtcgacgagctgcacgtgccgtacattgtccccggcgagtgcggcggccgggctgacgtccggtgggtggcgctccaggacgccgacgggttcggcctcttcgcgtcggcctacggcgagtcgccgccgatgcaggtgagcgccagctactatggcgccgcggagctcgaccgcgcgacgcataaccacaagctcgtcaagggagacgacatcgaggtgggttcgcatttgcactgtgtttagataaacaaaagctttattgaactcaacgaattacattaagatgatgatagaattgtaccgataacaacttttgattgtgatttggcgatgatttcagagagaaattgggtttgtgttgcaggtgcatcttgatcacaagcacatggggctgggaggggacgacagctggtcgccgtgcgtgcacgagcagtacttgctgccgccggcgagatacgccttctcggtgaggctgtgcccgttgctgccgtcgtcgtcgtgccatgacatctaccactctcagctaccctgttgatccgtctgagatgggcaagtgaggcaataaagcagagacgtatatatgctcctgtaaactaccggctgcaatgaccaggttgtttgtcgactgtgaaataagcgagcgagcttgatgctattcctcaatcttgactacagtgtcaatttctcctataaatggcaatggggacccatgaccctgatacccgatgggtttttactctattagaagctaattatgttctaactcttatacttatgggtctattgataggcgaaaattcttacccattgggtacgtgggtatggttatattctttacccacccatacccacaaacctgtgggtgaaaaatcccgtagattgagcctaaaactatgaataagataaatctcaactactattaaatc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0952600, RefSeq:Os01g0952600