Os01g0968700

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Revision as of 05:24, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0968700| Description = contains InterPro domain(s): IPR002627, IPR011593| Version = NM_001052055.1 GI:115442480 GeneID:4323831| Length = 27...")
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Gene Name

Os01g0968700

Description

contains InterPro domain(s): IPR002627, IPR011593

Version

NM_001052055.1 GI:115442480 GeneID:4323831

Length

2766 bp

Definition

Oryza sativa Japonica Group Os01g0968700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:44518360..44521125

Sequence Coding Region

44518457..44518721,44518808..44518887,44519033..44519101,44519198..44519279,44519390..44519484
,44519617..44519691,44519878..44520240,44520315..44520390,44520489..44520652
,44520795..44520914

Expression

GEO Profiles:Os01g0968700

Genome Context

<gbrowseImage1> name=NC_008394:44518360..44521125 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:44518360..44521125 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcccacctcgcggcctctgccgccccgcttccaagcgctgaccccgacgccggcgaggagtcctcccactctccgccgccgccggagaaggggctgaggaaggtggtggtggtgatgggcgcgactggcgccggcaagtcgcggctggccgtcgacctcgcgagccacttcgccggcgtcgaggtggtcagcgccgactccatgcaagtctacggtgggctcgatgtcctcaccaacaaggtccccctccacgagcagaaaggcgttcctcaccatctcctgagcgtgattgatccctctgtggagttcacttgccgcgatttccgcgaccatgctgtgccgattatagaaggtatattggatcgtggcggcctccctgttattgttggtggtacaaacttctacatccaggctcttgttagcccattcctctttgatgatatggcacaggatattgagggtcttactttaaatgaccacctagatgagatagggcttgataatgatgatgaagccggtctgtatgaacatttgaagaagattgatcctgttgctgcacaaaggatacacccgaacaaccatcgaaaaataaaacgctaccttgagttgtatgaatccacaggtgccctacctagtgatcttttccaagggcaagccacagagaagtggggtcgacctagtaactccagatttgactgttgtttcttgtggttagatgctgatcttcatgttctggatcgttatgtcaatgaaagggtcgactgcatgattgatgatggcctgctagatgaagtgtgtaacatatatgatcgagaggccacttatacccaagggctgcggcaggccattggtgttcgtgaatttgatgagtttttcagattttattttgcaaggaaggaaaccggtgagataaagatggattcctgtacaactatggcaggtctccatgatgataacctgaagggcttattggatgaagcagtctcacaactaaaagcaaacactcgcagacttgttcgacgtcaaagacgaaggctgcatcggttgaataaatattttgagtggaacttgcgtcatattgatgcaacagaagctttctatggtgccactgctgactcatggaacatgaaagttgtgaaaccttgcgtggatattgttagagatttcttgtctgatgatacaattttggcaagcagagatggttctagtgtaactggaagccctaggatgtcttcaagagagttgtggactcaatatgtttgtgaggcctgtgataaccgggtacttcggggaacgcatgagtgggagcaacacaagcaaggccgatgccaccgtaaaagagtacaacgtttgaaacagaaggctagtacagtgatatcattatag</cdnaseq>

Protein Sequence

<aaseq>MAHLAASAAPLPSADPDAGEESSHSPPPPEKGLRKVVVVMGATG AGKSRLAVDLASHFAGVEVVSADSMQVYGGLDVLTNKVPLHEQKGVPHHLLSVIDPSV EFTCRDFRDHAVPIIEGILDRGGLPVIVGGTNFYIQALVSPFLFDDMAQDIEGLTLND HLDEIGLDNDDEAGLYEHLKKIDPVAAQRIHPNNHRKIKRYLELYESTGALPSDLFQG QATEKWGRPSNSRFDCCFLWLDADLHVLDRYVNERVDCMIDDGLLDEVCNIYDREATY TQGLRQAIGVREFDEFFRFYFARKETGEIKMDSCTTMAGLHDDNLKGLLDEAVSQLKA NTRRLVRRQRRRLHRLNKYFEWNLRHIDATEAFYGATADSWNMKVVKPCVDIVRDFLS DDTILASRDGSSVTGSPRMSSRELWTQYVCEACDNRVLRGTHEWEQHKQGRCHRKRVQ RLKQKASTVISL</aaseq>

Gene Sequence

<dnaseqindica>98..362#449..528#674..742#839..920#1031..1125#1258..1332#1519..1881#1956..2031#2130..2293#2436..2555#aaggcccaaagcccacaacagagaggagagtgggcgacggggggctagggcggcggcggcgcggcgaccagcgacgggcggcgcgcacctgaccggaatggcccacctcgcggcctctgccgccccgcttccaagcgctgaccccgacgccggcgaggagtcctcccactctccgccgccgccggagaaggggctgaggaaggtggtggtggtgatgggcgcgactggcgccggcaagtcgcggctggccgtcgacctcgcgagccacttcgccggcgtcgaggtggtcagcgccgactccatgcaagtctacggtgggctcgatgtcctcaccaacaaggtccccctccacgagcagaaaggtctcctcccgggattccccagttcttcttttgaccaaacctgcttcagatcgagcttaacagcgctatctttgccgtgttaccaggcgttcctcaccatctcctgagcgtgattgatccctctgtggagttcacttgccgcgatttccgcgaccatgctgtgccggtgagcctatgatgttgctgctacgacttttagtgctcctagtgtgccatgtttactgattagttgatgtttcttagtgctctgctcaccaattatataaggtatattggtttactgattaattgctgtttctgagtggtcacagattatagaaggtatattggatcgtggcggcctccctgttattgttggtggtacaaacttctacatccaggttgatacttaagcgcatgaggattcctgtatattaggctatttttcttctgaattagactatatctgatttttgtccttttaacacttattgtaggctcttgttagcccattcctctttgatgatatggcacaggatattgagggtcttactttaaatgaccacctagatgagataggtgaatgatgaaagcttagcacatgtttcttgttgttagcatgttttgatcaatggttgtgtccaattagtgtttgacttgttaaacactgcttaacacatgccaagcagggcttgataatgatgatgaagccggtctgtatgaacatttgaagaagattgatcctgttgctgcacaaaggatacacccgaacaaccatcgaaaagtaagggtgttgcacagttgtgcccttaacctgttaggtttctttggtagcaattggattttccttgtggtgttgccccatttgccttatccggttatcctgttctgcatgcttttttgttgtgttgaccagataaaacgctaccttgagttgtatgaatccacaggtgccctacctagtgatcttttccaagggcaagccacagaggtgagaaaaaaatgatttcccttttaattaatttctttattctgacttgttgctgactctatagtccatgtgaaatgtgcaaggactttatgcatattatcatgcgcacaacacattttttgccgtacgagttggacctcatgcgaactctaaatgtcctaatgaggtcatttgttgtcaggacagaagtggggtcgacctagtaactccagatttgactgttgtttcttgtggttagatgctgatcttcatgttctggatcgttatgtcaatgaaagggtcgactgcatgattgatgatggcctgctagatgaagtgtgtaacatatatgatcgagaggccacttatacccaagggctgcggcaggccattggtgttcgtgaatttgatgagtttttcagattttattttgcaaggaaggaaaccggtgagataaagatggattcctgtacaactatggcaggtctccatgatgataacctgaagggcttattggatgaagcagtctcacaactaaaagcaaacactcgcagacttgttcgacgtcaagtaatctcgacacttttttaagtaaataattgaaaattgcattttgtgtgttttatattcttgcctttcttcagagacgaaggctgcatcggttgaataaatattttgagtggaacttgcgtcatattgatgcaacagaagctttctatggtaatgatatgtgcatttcatgttttagttcaaagccaaaagatttcatgtcttacgaaatctaatgtgtttgcttaacatgtcatgcatatttctaggtgccactgctgactcatggaacatgaaagttgtgaaaccttgcgtggatattgttagagatttcttgtctgatgatacaattttggcaagcagagatggttctagtgtaactggaagccctaggatgtcttcaagagagttgtggactcaatatgtttgtgaggtaattgggaggcttttcttattcttaccaaaaagaatgttgataactgtatcgtcatttgtgcgttttgccacattttttgttagtgggacagcaatcaatctgatgaaactttcttgcctttcctgctcctattttacaggcctgtgataaccgggtacttcggggaacgcatgagtgggagcaacacaagcaaggccgatgccaccgtaaaagagtacaacgtttgaaacagaaggctagtacagtgatatcattataggcaattagcactgtttgcactctcggtgttcatgaacctttcttcattctctgcaactgtccccatgcatcctgtttgtcaaattggctgaagactacaccattcagaaggtagcaagcagcagatatatttgttaatagtaccttgctagattcttgtgccagttccaaacatccaatgcagagaatacaaactctacagattggtcagc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0968700, RefSeq:Os01g0968700