Os02g0149600

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Revision as of 02:11, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0149600| Description = Zinc finger, C2H2-type domain containing protein| Version = NM_001052431.1 GI:115444232 GeneID:4328304| Length = 557...")
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Gene Name

Os02g0149600

Description

Zinc finger, C2H2-type domain containing protein

Version

NM_001052431.1 GI:115444232 GeneID:4328304

Length

5577 bp

Definition

Oryza sativa Japonica Group Os02g0149600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:2728876..2734452

Sequence Coding Region

2728892..2729370,2729483..2729544,2730516..2730570,2730784..2730858,2730980..2731054
,2731155..2731202,2731385..2731453,2731548..2732357,2732450..2732498
,2733157..2733266,2733381..2733488,2733920..2733980

Expression

GEO Profiles:Os02g0149600

Genome Context

<gbrowseImage1> name=NC_008395:2728876..2734452 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:2728876..2734452 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggacgtgctcctcccggagctccgctctcctcctcctccgccgccgccgccgccaccgacaaatgatgatcgcgcgcgggcggtggacctgccatcgccgactccggagtgtgacgatcgctcgccgcgtcgtgagctggggcgctcgccggaggatcacggcgtgccgctccctcccccgccaccgctcggctcctcgcgccccgagcgcctcgccagcgatcgtccggaggagggcgcctccgccgccgcgcagccgtgtggcggaaggagtgagagccccacggcgaggtccatgtggccgcggaggctctcccctgcgtcgttgccgccgcgtggcgggaggaggagcgagagccccacgccgaggtccatctggcggcggctctccccgtccccgcccccgccgctgccgcccttgcctcccaagcggccgcgcttggacggccgccgtagcccaccgcgcggtgggagattcggattcgagcacgagcgaggcagggaaaggagcatgaacacttcgcgtcgcgctccagattgcctggattctggatgtgatgccccctataatggtcaaagtaacacccggaggaaaggattgatgacatacaaacagtttacccaaaaacttgaagatgatgtttcaccgggtgaagctgagagcaggtaccaagaatacaagacatcatacattacttctcagaaacaggattattttgatcaccataagaatgaagatcgtttgaaagacatgtaccacccaacaaacttattatctgttattgaaaggcggaatgaactttgcaaggctgcagcgaagaatttgattcttgatttgcggagtggaactttggaccttggtcctggaatgactgctggtacagcaagtaaatcaggaaatgacagtgatggaatccctgcagatgatgaagattatcacaacaagagaagaaggcatcacagaggtcccctggaagaaactgaactagtttcagttgctcctaaagctcacccagtcagttcgcattatcgacgaattcaaactgacatacatcaaactctagccttagtgaagaagcttgatgaagagaagggtattgtgggaaacatcctgacaactggtgatcacacaaagtcaaatggtgacaaatcatatgctggatctacagggcctttagttattgtccggggcttatcaactgttaagggccttgatggttttgagctcctagacactctccttacttatttgtggcatgtccatggtattgattactatgggatgtctgagagtacaaatgcaaaaggtcttcgtcatgtgagagctgatacgaagaatgccaacatggacaaaagcagcgctgctgattgggagaagaaactggattatttctggcaagagagactgacaaacggcaaggatcctctagttgcattgactgccaaggataaaattgatgcatcagctgataaagttctagaatcttatgtcacaaaggttaaggatgataactacggatggacatacggctgtggagccaaaggatgtataaaagttttccatgctcctgactttgttctcaaacatctgaacctcaagcatcctgatttggtctccaaattgacttcaagagtccaagaggatatctatttccaaaattatatgaatgatccaaatgctccaggtggcacaccagttatgcagcaacaatcaccagagcagcaaggacctacaccttctgaactaacgcctggtgcttttggcgggcagggttccttcgttgaaatgcccactccaccagtactaatacctgtgcctggtgctggtccattgggtccatttgttcctgcacctccagaggtagtcatgcagatgatgcgaccagtgatgcccatgtatccgcctcgtccgcctaaccctcgtcgtctgcgaagctacaaagatcttgacgctcctgatgatgaagtcactctcgtggactacagaagtttgtag</cdnaseq>

Protein Sequence

<aaseq>MADVLLPELRSPPPPPPPPPPTNDDRARAVDLPSPTPECDDRSP RRELGRSPEDHGVPLPPPPPLGSSRPERLASDRPEEGASAAAQPCGGRSESPTARSMW PRRLSPASLPPRGGRRSESPTPRSIWRRLSPSPPPPLPPLPPKRPRLDGRRSPPRGGR FGFEHERGRERSMNTSRRAPDCLDSGCDAPYNGQSNTRRKGLMTYKQFTQKLEDDVSP GEAESRYQEYKTSYITSQKQDYFDHHKNEDRLKDMYHPTNLLSVIERRNELCKAAAKN LILDLRSGTLDLGPGMTAGTASKSGNDSDGIPADDEDYHNKRRRHHRGPLEETELVSV APKAHPVSSHYRRIQTDIHQTLALVKKLDEEKGIVGNILTTGDHTKSNGDKSYAGSTG PLVIVRGLSTVKGLDGFELLDTLLTYLWHVHGIDYYGMSESTNAKGLRHVRADTKNAN MDKSSAADWEKKLDYFWQERLTNGKDPLVALTAKDKIDASADKVLESYVTKVKDDNYG WTYGCGAKGCIKVFHAPDFVLKHLNLKHPDLVSKLTSRVQEDIYFQNYMNDPNAPGGT PVMQQQSPEQQGPTPSELTPGAFGGQGSFVEMPTPPVLIPVPGAGPLGPFVPAPPEVV MQMMRPVMPMYPPRPPNPRRLRSYKDLDAPDDEVTLVDYRSL</aaseq>

Gene Sequence

<dnaseqindica>17..495#608..669#1641..1695#1909..1983#2105..2179#2280..2327#2510..2578#2673..3482#3575..3623#4282..4391#4506..4613#5045..5105#ctcctcctccgctccaatggcggacgtgctcctcccggagctccgctctcctcctcctccgccgccgccgccgccaccgacaaatgatgatcgcgcgcgggcggtggacctgccatcgccgactccggagtgtgacgatcgctcgccgcgtcgtgagctggggcgctcgccggaggatcacggcgtgccgctccctcccccgccaccgctcggctcctcgcgccccgagcgcctcgccagcgatcgtccggaggagggcgcctccgccgccgcgcagccgtgtggcggaaggagtgagagccccacggcgaggtccatgtggccgcggaggctctcccctgcgtcgttgccgccgcgtggcgggaggaggagcgagagccccacgccgaggtccatctggcggcggctctccccgtccccgcccccgccgctgccgcccttgcctcccaagcggccgcgcttggacggccgccgtagcccaccgcgcggtgggaggtgaggcggagggaggacgttttggtttaccttctcggctctcgtcggtgtttgatttctcctgcgaagatctcaagctaatgtgtgttccgctcgcgcgtgtttcgtgcagattcggattcgagcacgagcgaggcagggaaaggagcatgaacacttcgcgtcgcgctccaggtgagctatacttgttgaacattttcatcctgccccttctgggcgcaggcatttccaaccaaaatcgtgccctgctacaagtttgcatagcatttctcaaagcagagtttctggttgttactttgggattgggaagggatttctcgagcacttagacagatggaaactgatcagtatggtttgaggtctccttcatcctggattcctggtagctcaaaatctctgggcttgcttggaggccaatgtgagaattttttttctcattccatcaaaacaaatatactctgtgtacttcagtagttctcatggtgaaatggtgagtgtaattcgtcagttagtgctttggcacgcttttcgagaacgaggagcctgggacattaagcacttactaggtgtcttgtactcttgtgtgatttcataatactcacctcggctgtcaactcaatgctatcagaattgcagcatgcatctttgtattagtgaaaaatttctgatgtcctcagttttaaaaaagaactatgccatcaatcaacactaattttattggcacactagtaggtgattatcttgttgagttacctatacactttgataaataggagttggcttcaatacttgtaaatttacttgagaacaagagagctagtggattgctatcaacatcgtgcatgtttcttgttggcttacctctagtcacaattgaagttcttagtatgaagcattttgacatcgatctattatttatgattaacctacttctgcagtattagataaaaagttaacattaatactctctctctctccccctctcttcattagtaaaccttattggttatgtgcatgaggacataggccggagatataaacaatttcaatgatctaataataattcatggtccttcatgtgagtatgtcttgtaagaacgacgattcactgctagaagtcttaacacttactgcttttcttctagattgcctggattctggatgtgatgccccctataatggtcaaagtaacacccggaggtatgtatatgattgccctatcatggtggtagttttgatctgttaggtatgttgatattgctattacttccaagtaatttgctagtgtggtgttgcattttgttgaacttttccttcctttttgtctttttttccgttttaaatccctcatatattgttgagtggatggagtgccaattgtatgagatcttatgtgattccaaatcatttcaggaaaggattgatgacatacaaacagtttacccaaaaacttgaagatgatgtttcaccgggtgaagctgagagcaggtatttattaacaaaaagttacacaacattccagaacttgaattaatctgttgtactagattgcacttaaagttcagtgagctatttgtctaagtacactgttatcaacttggttaacaaggtaccaagaatacaagacatcatacattacttctcagaaacaggattattttgatcaccataagaatgaagatcggtatgttcaaaatgcacttcctttccttctggtggtgttaattgtactttgttaagtaaattggtattgcaggttcatttctttgtttttgtaattgcagtttgaaagacatgtaccacccaacaaacttattatctgttattgaaaggtaataataagtttgcttaaagcttcactcagaagtttacctgctgtcagaaatttcgtatttgaattcgtattgagcagcattcataaaccgaacagcgcttttttatgtgcgctattcatttcgctcagaaaaggttgtgttgcttgttggtttcttatgtctgtttttatttcactcaggcggaatgaactttgcaaggctgcagcgaagaatttgattcttgatttgcggagtggaactttggacctgtgagatgaatctatgtatcatttatgttgtgaatgattaatcctatggtatttcaagttggttttgctgatatcttgattttcattggcatagtggtcctggaatgactgctggtacagcaagtaaatcaggaaatgacagtgatggaatccctgcagatgatgaagattatcacaacaagagaagaaggcatcacagaggtcccctggaagaaactgaactagtttcagttgctcctaaagctcacccagtcagttcgcattatcgacgaattcaaactgacatacatcaaactctagccttagtgaagaagcttgatgaagagaagggtattgtgggaaacatcctgacaactggtgatcacacaaagtcaaatggtgacaaatcatatgctggatctacagggcctttagttattgtccggggcttatcaactgttaagggccttgatggttttgagctcctagacactctccttacttatttgtggcatgtccatggtattgattactatgggatgtctgagagtacaaatgcaaaaggtcttcgtcatgtgagagctgatacgaagaatgccaacatggacaaaagcagcgctgctgattgggagaagaaactggattatttctggcaagagagactgacaaacggcaaggatcctctagttgcattgactgccaaggataaaattgatgcatcagctgataaagttctagaatcttatgtcacaaaggttaaggatgataactacggatggacatacggctgtggagccaaaggatgtataaaagttttccatgctcctgactttgttctcaaacatctgaacctcaagcatcctgatttggtctccaaattgacttcaagagtccaagaggatatctatttccaaaattatatgaagtatgtatttagatctccaaatgcaaatgacaaattgttatttccgacatgtcaaaaggtaatgcttctgttgttgtttacttttgatgcagtgatccaaatgctccaggtggcacaccagttatgcagcaacaatcaccagtaagaaactatacactgtttagcttgttccttttcactgatatgcttaagaacattcccttcttgtttgtatggtggggtgagaaaagctataatactattcttaattaactctgaaactaaactaatttatctgaactgtttctcggtcttagaaggtttacattgcaccgattgttaatttcttccgcaatttccccctttgagatgcttattttcattttttagttgtttgtgcttatcataaaaacagtttgtttctttaggagtttgtgaaatgtttttccatgtcccatgtttgactaacagatcaatagaaattcaatccataatttgttgtgttcacctgtcactagtgaagctctatgttgtagatctttcaccttatttccacattaatgagtaatcgatgacaatattttacttcttgtaatatttatgtatgtgaagtctctgatgtttgatactgttcgttcttcatcataatccatgtaacttctctagtgttgaatgttcttaattttgcatttcaagtatatttgctgggggatattaaacgtgcagtgtatcacttgaaacttgaaagtgttgtgtattagttattgaaatcctaaacctgcagtataatccttatttataagcccgttctggtttgcaggagcagcaaggacctacaccttctgaactaacgcctggtgcttttggcgggcagggttccttcgttgaaatgcccactccaccagtactaatacctgtgcctggtgctgggtaggttaattatgttatgccagttagctaaacaattaagtactctacaaaaaggaaaaacaagtcagttatcaagtccaggcacaattctaactatggttgtcttggtttcagtccattgggtccatttgttcctgcacctccagaggtagtcatgcagatgatgcgaccagtgatgcccatgtatccgcctcgtccgcctaaccctcgtcgtctgcgaaggtcagtactgatcaactaaagtttgattaatttccccctaaagaacactaagcttaatactttgataaaaaaaaattgccgggtccgcggaaggacgccgacctactttgataaaatttggtatacgttaggaaatgaaaatccgttaacaacaacatggttagtttttgcactttcgaaatgatttgctaaatacgatcccaatgactatgcaatgctccttcctctcttgtccttgcctgtttctgcactggtttactgccctactatactttctactttgtgccagcttctcttgtgatcttgtcctattgcatttgattgtggaagcagaaaacatgatacacctttgtgtcgaacatatggatatgcttcgctgtagtttctgttgcctaactctctaaaatttaaattcatgatgttggatgcagctacaaagatcttgacgctcctgatgatgaagtcactctcgtggactacagaagtttgtagatgcgcgtttcgtgttaaccagcagccagcaggctaattcggtgatggttcctccagacagcgtaaaatttttctaacaactgatatgaaagcacgattacttcccgttgctgccacaatgaggagacggacgacggataggaaattttcgtcacgtctgacacttaagatgcgtgtcgcttgaacgatcaaccattctatcatacatacattgatctgcccctgtgttttctgatacttgaatgggcaacagaagttacgggattaacatgatctaatttgccactgtacatgtttgctgcaggatgatggaaaactagttattcttccctcttcttagacatgttcttttggatgcactccgtttaacaccctatatgaagcgagaaagacctctttcttcttttttttcctattaactatatatctgtctggtggataatggtttgcttaacacagaccgcgttacaat</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0149600, RefSeq:Os02g0149600