Os02g0171100

From RiceWiki
Revision as of 02:14, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0171100| Description = Similar to Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) (GAPDH)| Version = NM_001052566.1 GI:115444502 Gene...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os02g0171100

Description

Similar to Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) (GAPDH)

Version

NM_001052566.1 GI:115444502 GeneID:4328446

Length

4831 bp

Definition

Oryza sativa Japonica Group Os02g0171100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:3868112..3872942

Sequence Coding Region

3868230..3868313,3868876..3868937,3869040..3869098,3869187..3869225,3869629..3869729
,3870288..3870400,3870976..3871075,3871170..3871316,3871442..3871502
,3871616..3871713,3871786..3871928,3872221..3872304,3872389..3872478
,3872574..3872628

Expression

GEO Profiles:Os02g0171100

Genome Context

<gbrowseImage1> name=NC_008395:3868112..3872942 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:3868112..3872942 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcagcagctctccgcccccttccgcgccgccgcggccgccggatcccgcgcctccgccgccgccgccgatcccgccaaggtgttacgcttgagaagcgctggctcagctcagttcacctccatcgcagcttcctcttcatttgctaggaacattgagccgctgagagcgatagctactcaggcaccccctgccgtcccacaatattcgagtggcgagaagacaaaggttggcatcaatgggtttgggcgaattgggaggttggtcctgcgtattgcaaccagtagagatgatattgaagttgttgctgtcaatgatcctttcattgatgctaaatacatggcctacatgttcaagtatgactccactcatggtccatttaaaggctccattaaggttgtggatgattcaaccctggagatcaatggaaagaaagtcacaatcactagcaaaagagatccagcagatattccttggggtaactttggagctgagtatgttgttgaatcttcaggtgtttttacaacaactgaaaaggcatcggcacatttgaagggcggtgctaagaaagttgtgatatctgctccatcagcagatgctccaatgtttgtcgttggagtaaatgagaagagctatgatcctaaaatgaatgttgtttctaacgcaagttgtactaccaactgtcttgctcctcttgccaaggttgtccatgaggaatttggcattgttgagggtctcatgacaactgttcatgccacaacagccacccagaagactgtcgatggcccttcaatgaaagattggagaggagggcgtggtgctgctcaaaacataattcctagctccactggtgcagccaaggctgttgggaaagtcctccctgagctaaatggaaagctcactggtatggccttccgagttccaacaccaaatgtgtctgttgtcgacttgacctgccggattgaaaaaagtgcatcctatgacgatgtgaaagcagccatcaaggcagcatcagagggtgcactgaaaggtattctaggttacacagatgaggatgtggtttccaatgacttcgttggtgatgcaaggtcaagcatctttgatgccaaggctggtattggactgagctcttccttcatgaagcttgtgtcatggtatgacaacgagtggggctacagcaaccgtgtgttggatctgattgcccacatggctcttgtcaacgccaagcactga</cdnaseq>

Protein Sequence

<aaseq>MAQQLSAPFRAAAAAGSRASAAAADPAKVLRLRSAGSAQFTSIA ASSSFARNIEPLRAIATQAPPAVPQYSSGEKTKVGINGFGRIGRLVLRIATSRDDIEV VAVNDPFIDAKYMAYMFKYDSTHGPFKGSIKVVDDSTLEINGKKVTITSKRDPADIPW GNFGAEYVVESSGVFTTTEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKSYDPKMN VVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAA QNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRIEKSASYDDVKAA IKAASEGALKGILGYTDEDVVSNDFVGDARSSIFDAKAGIGLSSSFMKLVSWYDNEWG YSNRVLDLIAHMALVNAKH</aaseq>

Gene Sequence

<dnaseqindica>119..202#765..826#929..987#1076..1114#1518..1618#2177..2289#2865..2964#3059..3205#3331..3391#3505..3602#3675..3817#4110..4193#4278..4367#4463..4517#cgccaccttccccttccccccctccgccgcctcctccgccgcgaaacgaaaggcgagctctctctctctctctctccgcggcgcggtcaaaaccctagcgcgcgaggaggccccccccatggcgcagcagctctccgcccccttccgcgccgccgcggccgccggatcccgcgcctccgccgccgccgccgatcccgccaaggtatcgccctcccttccattcctcctgtgctccctctccctcaccttcttccccaccccccctccggaattttccggtttgttccgcgtcggggttcgattggcagagggttgggacgtcttcgttcgttgtgtgactagttgtgttgctgatactgcgcctagatttcgtcttaagcttggtttccgtgaatctgggaaccttgggttggggggggggggggcaaatgctggggttcgtttcttgtttatgtgcgttctccctggttgcttcgtactataatctgttcatttctgtgctggagtatggaggttacttttatacatactagtggagaatcatgtacccaggcgctttattgttatcagcaaaaagttctgtactgttatcaacatagttgattcttggtcaaagaaatcctattcacactcttcaattaagatgttaatactattcactctcttcaattatgtgttgctcatagttagtttgttggatttttagttttttagtagtagaaagatgtccctcctgttgatgcgatttgcctgctatggaacaggtgttacgcttgagaagcgctggctcagctcagttcacctccatcgcagcttcctcttcattgtaactgcctgcttctaatgcctatttcttcctcttcgttgtaagagcgcttttttgatctgattatgttttaacgcatctaaataatttttttaactcaagtgctaggaacattgagccgctgagagcgatagctactcaggcaccccctgccgtcccacgtaagtgtctggtttcccaaacaaatgtgtaataatagaattgtgcaggcagcagcatttgattattcctttttgtttctgtctgtagaatattcgagtggcgagaagacaaaggttggcatcaatggtgagttgcttctgtttattctaggaactagtccattaattttaatgggatatattaatctgtttattctaggaacctagtccattaaaaaaattgctataattttaatgggatatattaatctgtgctggccaatgcattttgtcttgcatgcgttttttcttttctttttttgcaaatatatgatatcaattgcaactgaatgtgttagttcgagttccatgtctttaggttttccaaaagcaatttttagtgctcagttaggtatatgctacagcaactgaatcacccatggcttgttggcagaagtagtttacagtttattgtaccatacatcaaaagtaggcgaaataatttattgctatttgtttgtaatgcttgtcttatttttttggtatcatagggtttgggcgaattgggaggttggtcctgcgtattgcaaccagtagagatgatattgaagttgttgctgtcaatgatcctttcattgatgctaaatacatggtaagaaaatagttcaaattatttgcctacctcccatatttcataccttggttgcttcatttaatcaatgaacattatattttcaattttggggggatgaagttttgcttgcatttgctacactgcattagcttatatgatgccatgttacgttcttttaggtttgtaagtgttataaaccttgacgaaaagattggccttttctcagcttaagctaaattaagattgatgcagataatattttatttgaaatcattgaaaaacctacttaatgtgcattcaccttaagttacttaaatatgctatgcagtccattgtgctacatttcaatttgctagttatatattggcacagtttcttggttcttccatataatcacacgaaactgcatccctaccttatgtgttcggttcaatgaccataatagtccatttcaatgttttactcctaatgcaacataattcctgtcactgtgggagtaccaacccatccttccatgcggatgcaacatttggttgtgccttttctttctgtagataatctctttcttttttccaggcctacatgttcaagtatgactccactcatggtccatttaaaggctccattaaggttgtggatgattcaaccctggagatcaatggaaagaaagtcacaatcactagcaaaaggtaatatcaagtccacttagggactagtacatgattacatagaatgtcacaattatttgttatctaagtattgtgtttgatgattattagtaaaaaaaaaccctcttgaaacattgctagtaaatttggatctcacaattattgaggtattgcatcactgtgttcccatgccatcatggattcaacctaaaattctttggatcactggaaaaataattattgtagcctaacgtataatctggtcttttgtcgtatcactgcttacttgtatagtcgaatatattacaatgtgcagccttgtgaaataaagaaaagtaaagtgtctttacgactctaaccatatctggagtatggagtgattgactgaacatgctatacggatttataattgagtaccttttagtcctagctcctaaagtaactcagtattgttgtgtacgttgtacatttggggtacttcacaatcctttcttcaccgtgcccctgctctcgatacacaattatgtttctgtgactacattaatttctgttagttcttgcatttgcacctaagaatttgcccccttcttttccagagatccagcagatattccttggggtaactttggagctgagtatgttgttgaatcttcaggtgtttttacaacaactgaaaaggcatcggcacatttgaaggtttgtacaccatttctatacattgccatctaactgagaaatggcaagcttttatattggataaaatggtgatgtttttatgccttgtttgtagggcggtgctaagaaagttgtgatatctgctccatcagcagatgctccaatgtttgtcgttggagtaaatgagaagagctatgatcctaaaatgaatgttgtttctaacgcaagttgtactaccaactgtcttgctcctcttgccaaggtaacttatctatttctaatcctgttactattttcccattttaatcataacaaacaatttgctcttgtgatttttcatattttcgtccatccaatggagctaattgatattccatgggtatgcaggttgtccatgaggaatttggcattgttgagggtctcatgacaactgttcatgccacaacaggttttctttcccttatgaattttgtcattgtcaaggatggagactgccaatttttcagtctcctcatatcatgttgttcattagtcataacagacttgctttcctatattcagccacccagaagactgtcgatggcccttcaatgaaagattggagaggagggcgtggtgctgctcaaaacataattcctagctccactggtgcagccaaggtacgatgaaccaaaaatctaccttgcttttctagatttctgttttggctgactgttttgattccttattaggctgttgggaaagtcctccctgagctaaatggaaagctcactggtatggccttccgagttccaacaccaaatgtgtctgttgtcgacttgacctgccggattgaaaaaagtgcatcctatgacgatgtgaaagcagccatcaagtatgtaggactatcatttgtccatgcacattatctgctgtttctgtttggtcaattgttttaagtcttaaaatgcttgagttggtatacagtagccttcaataatttgaacgtgaacagaataatacttgtgttcacaaatgaattgcaaaagtaacatatcccttgttacgtcttttgactgtgctagaaactgcggtcatgcacttgtaccgtctgaagattctgtgatgtgcctgtatgtaacattgtgaatcttttatcagatttactcataagctgtgtgtttcagggcagcatcagagggtgcactgaaaggtattctaggttacacagatgaggatgtggtttccaatgacttcgttggtgatgcaaggtaagtacttctagatgtaccgatgtaaattgtgttgtgctcaaaagggagtggttgacataactgcccctttctgcatatcaggtcaagcatctttgatgccaaggctggtattggactgagctcttccttcatgaagcttgtgtcatggtatgacaacgagtggggctacaggtgagtgtctatatttccattaaggggcttaactcttcatctttttttccaattgttctattgtcctaatgattctgttccattctttgtttcagcaaccgtgtgttggatctgattgcccacatggctcttgtcaacgccaagcactgatttgttgaaaatcctcctccgatagtatctagctaggaaaggctgcaattttgacggtctctttctgttgtcttggaataagatgtaaacttggaaacaaagcaaaaaaagaatggacattgatgtccatgacattgtttgtagcaggcggtgaaatttactctgtatcgacctgggcaagcggaactgttgagtgaaccatatgtcggcaacctgattgattcattgagtccaatgctatgccattctatatttactttaaacatgcttgtttcatgccagaaatgttcaacagacaattggcaatttacctc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0171100, RefSeq:Os02g0171100