Os02g0173900

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Revision as of 02:14, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0173900| Description = Similar to Succinate-semialdehyde dehydrogenase (EC 1.2.1.16)| Version = NM_001185897.1 GI:297720926 GeneID:9267109| ...")
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Gene Name

Os02g0173900

Description

Similar to Succinate-semialdehyde dehydrogenase (EC 1.2.1.16)

Version

NM_001185897.1 GI:297720926 GeneID:9267109

Length

7580 bp

Definition

Oryza sativa Japonica Group Os02g0173900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:4044606..4052185

Sequence Coding Region

4048561..4048582,4048689..4048766,4049930..4050015,4050301..4050333,4050426..4050458
,4050754..4050854,4050986..4051071,4051478..4051584,4051683..4051760
,4051854..4051886

Expression

GEO Profiles:Os02g0173900

Genome Context

<gbrowseImage1> name=NC_008395:4044606..4052185 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:4044606..4052185 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>tgctctactccagagtacacaggtcagaaagattacattcacagggtcaacagctgttggcaaaaaactgatggctggatcagcaaatactgtgaagaaggtatttatgaaaaatttgcaagtgcgtttatcaaggctgttcagagtttgaaggttggtaatgggcttgaagagagtacatcacagggccctctgatcaatgaagctgctgttcagaaggtagagaagttcataaatgacgccacttcaaagggagcaaacatcatgcttggtggtaaaaggcacagccttgggatgtcattctatgagccaactgtagtagggaacgtcagcaatgatatgcttcttttcagggaagaagtctttggtccagttgcaccacttgtaccattcaaaactgaggaagatgcaatccgtatggccaatgataccaacgcaggcttagctgcatatatcttcacaaagagcatacctcgttcatggcgcgtttcggaagctcttgaatatggactagtcggtgtgaacgaggggatcatctcaacagaggttgcgccgtttggcggcgtcaagcaatctggccttgggagagaaggatcaaaatacggcatggacgagtacctggagctcaagtacatttgcatgggaaacctgaactga</cdnaseq>

Protein Sequence

<aaseq>CSTPEYTGQKDYIHRVNSCWQKTDGWISKYCEEGIYEKFASAFI KAVQSLKVGNGLEESTSQGPLINEAAVQKVEKFINDATSKGANIMLGGKRHSLGMSFY EPTVVGNVSNDMLLFREEVFGPVAPLVPFKTEEDAIRMANDTNAGLAAYIFTKSIPRS WRVSEALEYGLVGVNEGIISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYICMGNLN </aaseq>

Gene Sequence

<dnaseqindica>3956..3977#4084..4161#5325..5410#5696..5728#5821..5853#6149..6249#6381..6466#6873..6979#7078..7155#7249..7281#actgatccgaacagaacaggtggtccgatcgccacccgcctcgtcgtcttcctcgcgaactctccacccccaccaccatggcgatggcgatggcgatgcgacgcgcggcggcgctcggcgcgcgccacatcctcgccgcctcgtccacctcctcctccggcgtcctcctccgccgccacgtactctccccctctgccccccccccccttcggatgtgggtttagggcgcttgctgtgaattgggaggtttgtgcagatgagcgtggacgcgggggcggcgatggagaaggtacgggcggcggggctgctccggacgcaggggctcatcggcggcaaatgggtggacgcctacgacggcaagaccatcgaggtattttttgccctagttacccgtccccatcgcgcgtctcaggcaggcatagctccggttgctcttgcatcgctttctctgctctggtgtggcgacttgtcaaaaaaatatatattagagaagtcactaacttgggaccgaaactcactgttacgcttgttcgtttcgatgcctgtggattgatgcgtcgtgcatagaattaatttcagtcgatttatggattagtacagaacatgcagattggaattgtgggggtgaaactctgttggactgtagattaattggtgaatttaatgtataggttgtgaacatgcaatttgctcttggaaatccctgtgagcagttcgttgagctaatttattttctgcaagatgctttgtacctggtggttttgtttcacattgctaggtgatttcgagaggggcacttataacactggggtgtctaggtgttgtaatgggaaaatctttgtattgaatgaaagatcacactgtctagtgctgttcgttttggaaatctttgtgagggggttactgagtctagatcgctggagaatgccatacacttacttgcaaacataaactagctctatacctttatatttttgttagagcatatttgccatcgctgttacagagttaatagtcatgaatgaggaatgtagcgttgcaatttaagctcatattgtggcttttgatttttctgcttaggttaattttgtcaattggactggacaataagaacacgttgctattggaaagaactttatccagtgtttatatctctagtttatgacagtgttagttgttgatgattaaaacaccattcttttcctctcttaggttcaaaatccagcaactggagagactcttgccaatgtgtcctgtatgggcagcaaagaaacatctgatgcaatagcttcagctcacagtacattctattgtacgtcagaagtataaactacattcaatttttatgcttcagagttgctttagtaggcctgatctttttaatgttatttgattaaatttcttcgagaattcaatacatatactggatattttgaatcgaatgaaatttagtttatctcagttctgtttattcttcttggcaataaagagcactagttttcacatgtgaccgatatttttattcaccacaaatatctagttatatctcaaaaatgcttctagtttgcttagatatcatatagctcaacaataacccttactaatgtcaagtttggtacttagagcaattcataagtaagtcataggatcaataactactgcaatgtagccttacaaggtgaatatctatcaaattcttcttttgttgcaagcctttcgaaatgtagcactggaaaattatgtaaaagatttagaagacagtctgtactcaatggaataacctttactctatccaaatgcaaaggtggaactcaaactattagacaaaaaaagagtacactattagcaaagtgaagttagaatttcaaagaatcatctctccttttatatttgtttattcttatctgtatcaaacttgtcatgtttattctttgccttgtacaacattttattccacattcctatacaataattagaggtctgtttggatacaattttgctctctatataactatttgcaatgttcagaggttgtgggggagagatgttcccttgtttgtgatcttggatgttaagccggtctccccacccagcgctttggtgccttttgtaatagcactgcagtttctgtttctttctttttactgttttcagactctgtattttggctttctcccaaaagctgggtaatgaaaattgcattccatctaaaataactatttgcagtaatttggataaattgatttgcttttgtttgttgatcatattcactacttatactccttttgtttgaatattaatccttttctttttttagcttggagcaaactcactgcaaatgagaggagcaaggctctaagaaaatggtaatttttatgagcacatattttaaagatttagtgataacaacgatttttatgtagtattacttagatgctttttctgacttatcatattgcacgaaggcatgatttaattatctcacacaaggaagaacttgcacttctcatgacactggagcaagggaaacctatgaaagaggctcttgttgaggtactttctaaaatactgcgctgatattcgttagttggaatatgtgattctaaagccttactggagactcattggttgctataaatattcaggtcacatatggtgcaagttttattgaatactttgctgaagaagcaaagcgtatatatggtgatattattcccccaactctatctgatcgtagattattggttttgaagcaggtaatatgctaaaacattgtaactttattaattatgctcaaaataactttaaccccaatcacttaaccggcctgtttttattgcatattcaccagtttgtcttgagccattgtcaatttctatctgtaacatatatagtagtagagtacttgtacgatctactttactatctttgctgagcttatacatttttatgaaagaggaagagtgatataatcagaaatgagtattggttactatctgattttgcataaggtttgaacactccattactgaagtgtagcacgaactaataaatagttttcttgacctgctgtagcttatctttatctttactatttaatccctaccatgtgaaaatttacatataaactacatattatatatcttagtgtttcttttgttacagcctgttggagtagttggagctgttacaccatggaattttcctttagcgatgataaccagaaaggtctcgagcaatgcactacacttctgttcttctaaactgttcaaaagggagaaatagctaaggtagtacatgttattctcttatatgtggttttgtacttttgtgcaggttggaccagcattggcttgtggctgcactgtcgttgtcaagccatcagagttcacacctttgacagcacttgctgcagcagatcttgctcttcaagctggaataccagctgtaattctctcaagttatctgcaactccacttatgttcaagtatttactattactagcgtagttcacatgcaatgcaaggatataaaaaaaatgtgtattgtagtgataaatttcacagtacaaatataatcgttctcaaatctgaaaaaaacatgttattcacatcagaacaatcacccagtggatgatatacacatgcgaagaggataaaatactactacaaacaacacagatgtctatgtagatccatcaggattggtgtgagaagggatggggggttttgagcacattatcaccagttcaccaccaacccctttcaagtagtagagaaatctaaattcctctctgttattcgcaaatgaagaagttgtttttccattatctgttcattcatccagtggtttttttcttcttctcatgattccattcatggtcgctatcttgaacatattcttttatccagggcgcaataaatgttgtgatgggtaatgctcctgagataggtgatgctctactccagagtacacaggttctatttcctcccattcttcatcatatccgcaatattagattcttccgagttaataggataagtaagaacaatttttttttacaagataatatgcttttaataggtcagaaagattacattcacagggtcaacagctgttggcaaaaaactgatggctggatcagcaaatactgtgaagaaggtataaccgagaagttctgatgtttggacaataaaatatattatgaatgctgattctcctttagaatacacttgattgccacatgtctgtatgagtgtgcaaggaatctgggaagaaggtttcaaaaaactaatgctaactggacagttttttctttcaaccttgaaacatgtggtggggggtgggggtggctatggtatattaattttttttttaaatccacaaaggttatgtacaatgaagaaattacatatgaatggaaactggacagtactctcggtttttgcaaactcacccctaacactttttatttctttcggcctagtcactaaaaaccccataaagcatgtattcccccacaatgtctatatcactaattagatgtgctgaaagcatcaaatcttggaaaagcagccccaaatttgccatttggcagaagctggtggaaatgcctgcattttggaaccccctgatggtgtgtttttgggctaaacttgtcaaagcatgctaatgcacttagcctgcaaggttcctaaatggtgtgttgttcttagatgtgttgatatagagttctaaattttgagcagtattttggctagtaatattatatcatgtcaataatagctttgacatttctgcttttgacctttttggtggcatattggtcgcagttgcaccatattgtcagtgagtaaggtcatttcactttatgtaaattatatgtttttagtgaggcttttcaaaaaaaaacatttctggtgttcatgctgataagttattttacaggtttctttggagcttggtggcaatgcaccttgcattgtttttgatgatgcagacattgatgttgccattaaaggcagtgtaagcaaaaaaaaaaaagacttatctaccatttcaacatttttttttgtggtgtactttgtttctcattgatatactgaccaacatacatcatcattaattgcattttatattctattatgatgcatgtttatcaacactacttctgttcagcttgctgctaagttccgtaacagcggacagacatgtgtatgtgcaaacaggatattggtgcaagaaggtagatttttcatctatgacatgtttatgttgttagggcctattttgctctgttacaatagtgtttgtctcatctgtaggtatttatgaaaaatttgcaagtgcgtttatcaaggctgttcagagtttgaaggttggtaatgggcttgaagagagtacatcacaggtacataactgtgtctccatcgccattaaaattatagaactaataacttttggcaatatgattcttatattcattgcctagacaaattttatggaatgcttatttattagcgttgtaagtatacctaatgttacagcacttaaaattaaaaccgttcaccttctggatgaattcatatggaccaaatttgcctctctgctctgtgcattttgttatacctatatgacatacattttagaatttatctattcccaacttaggatttccatttcctttaatatgcagggccctctgatcaatgaagctgctgttcagaaggtataaattctgcagacttccagtaatttcccatattgttaatgttaagtaatagttcctcaaatgttccatctgcaatctgtttcctccaggtagagaagttcataaatgacgccacttcaaaggtaatctgaaatcatcacaaggatgttcattcccccctttgaaattagggtagggttaaaaaatgtaaaactgcactgattgctgcccctggccccatctggtttgttggtctataggctgtttgctggatttctcttggaaaacattaacttggcctgtaagggtatataaatcagctttggctagtacttatgttgtttgcctgcttcagttaaagactgggaccttgtttgttttcttttgtctgcttatctttgcaactgcacgtaagatacccccatcatccttttgcagggagcaaacatcatgcttggtggtaaaaggcacagccttgggatgtcattctatgagccaactgtagtagggaacgtcagcaatgatatgcttcttttcaggtagggttcaaaaattgtgatttgaccttattttagtgcatatgctttaccttcatgcgaagaaatgttcaatcattgagaaattctttgacatccttgttctagtttctaacaatcacatttggcttcagggaagaagtctttggtccagttgcaccacttgtaccattcaaaactgaggaagatgcaatccgtatggccaatgataccaacgcaggttcgttactagagtacagtatattcttaactatttaagactgtttccttaaaatttgctcttcagtgatatgcctagtcctttaaagaaaaaaagaagaagaagaaactgcattgtagcaagtcagggtatttctgtagtgagagacaaggcaactaacatggatgtagcaatatagaattttaaccatgtaggcctatctaccttaagaattcctgacagttatttatccatattagttcagtcatgtccttgttttgctttaaggttgaaatatgatgagaaacgatgtccatactgctaacctgtagaaatgcatcccctattgctagctgtacaaacatgacatgtttcccttgttccttccaatccctcaagaattatcttcttcaatgattaattgcaggcttagctgcatatatcttcacaaagagcatacctcgttcatggcgcgtttcggaagctcttgaatatggactagtcggtgtgaacgaggggatcatctcaacagaggtaagaagcaagcaccgtcccagataacaaaagctaagcaactccattctccttatggtccactttataaatgctgttctaacttgttttttcttcaggttgcgccgtttggcggcgtcaagcaatctggccttgggagagaaggatcaaaatacggcatggacgagtacctggaggttagcattgccattagacatgcaaattgcaaacacctctctggttttacgcttatcctgttcttgatcacattgctcggtttgcaattgcagctcaagtacatttgcatgggaaacctgaactgatccacttgagagtaccgtgcgtcttaaaaccgaagtacctggctggtgatgaatcgaagccgggggcaagagtagctgcaagaactgaagagcactgaggctacttgcacctgcaggacaggttagaaacttagaataataataagaagaaataataaaaataaagtggagtaagctaagccagggagccggaataaaaagttccccaatgagttgtacatgatgtgaaccgtaaagcacggcttcatctccgagctttgtttggtactagtactacctgagaaatcatcacgctactc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0173900, RefSeq:Os02g0173900