Os02g0179900

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Revision as of 02:15, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0179900| Description = Similar to Negative elongation factor E (NELF-E) (RD protein). Splice isoform 2| Version = NM_001052622.1 GI:11544461...")
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Gene Name

Os02g0179900

Description

Similar to Negative elongation factor E (NELF-E) (RD protein). Splice isoform 2

Version

NM_001052622.1 GI:115444614 GeneID:4328504

Length

8358 bp

Definition

Oryza sativa Japonica Group Os02g0179900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:4440183..4448540

Sequence Coding Region

4446958..4447430,4447548..4447723,4447911..4448173

Expression

GEO Profiles:Os02g0179900

Genome Context

<gbrowseImage1> name=NC_008395:4440183..4448540 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:4440183..4448540 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatggttgccaggttgcttagcttggaagaggctgagaaggaacgagtatatgagaaggacgcgggcattaaatatggacaaggagaatcgcatagaactggaagagatgacattgctgtgaatgctcgtaatgcttctagacctggagaaggtactgatagtggtgaatcagacatgttgggtctctctcattatgctatggaagcagggtacaaacgctctaatgaatccacacccgctgaacctgttccaagcaagaagccaaaagttgaccctgttttgcccgcttcaaaatggagtcgagaggatgatgtcagcgatgatgaagatagaaaaggtggcagaggcttaggattaagctattcatctggtagcgatattgctggtgattctgggaaagctgatgcaacagaagttagtactgatcactcgaatcatcaccaggatacgattcttgatgaagagcatagaaagaagttaaggcagattgaaattgctgttatgcagtatcgtgaatctcttgaggagaagggtttgcgaaacacagaagagattgagaagaaggttgccagccaccgtaggcgtcttcagtctgaatatggtttatcattttcaaatgatggtgcaaacagcaggcgctcttctgagaggacatcgtcggagcggagagataggcatgatgattcttcaagaaagcgtcatcgaagcctgagcaggagccgtagtcctccaaggagatcactggaaagagatcgagagcacaatcgcaacagagacacagacagatctcatggtaatgatgctggacgagagagagacagggtacgtgaaaaaagcgcaagccgagggagggatgatcactatgatagaagcagagacagggagaaggacaggagaaagggaaggtga</cdnaseq>

Protein Sequence

<aaseq>MMVARLLSLEEAEKERVYEKDAGIKYGQGESHRTGRDDIAVNAR NASRPGEGTDSGESDMLGLSHYAMEAGYKRSNESTPAEPVPSKKPKVDPVLPASKWSR EDDVSDDEDRKGGRGLGLSYSSGSDIAGDSGKADATEVSTDHSNHHQDTILDEEHRKK LRQIEIAVMQYRESLEEKGLRNTEEIEKKVASHRRRLQSEYGLSFSNDGANSRRSSER TSSERRDRHDDSSRKRHRSLSRSRSPPRRSLERDREHNRNRDTDRSHGNDAGRERDRV REKSASRGRDDHYDRSRDREKDRRKGR</aaseq>

Gene Sequence

<dnaseqindica>6776..7248#7366..7541#7729..7991#gggtttagagaggcaacaaaaatcagtaggtcgtcccagggcagggccttgctccgatccccaatccgtccctcgagcgagcagaggcgccgccgtcgctcatcctgctgcttccgccgccaccgccgccgccgcctgcgccgatccccatccatcccgcaagcgagcatcctggttagcacatcctctttcccatctctctcgacccacgcactttttttttttatcgaatttgcgttaaccctagctcctgttctagaaatttgccttaaccttaatactactaataacagtttgtttgttcccaaaaagtttgggggttgaactgaatgaacccccatgtcccatgttagatccgcccatggcatgcagggtggtagagtaataagattttcaagtgcttgctactcatattctgatgatctgttgataattttatgttaggattaggatgagttcgaagaaggttccattccaccgacataaggagaacgaagaggcgaggaagaaggtaagggttttcaaatctctttctggagacacctctacttatacttttttgcacgcacattctatccatatctgattttaactgcttctgatctgtgtagagagagcaagatgaagcggcacgtgtgtacgaggaatttgtggagtcattcaagggtgatagcacatctgggtcgaagtttgtccgaggaggtgtgattgatcccaatgccaagctgaggattgattccgaaggttagtgatatggtttacattttcatataccttgttgtagttggctttactctttgtagattgaaaatcatgatggatatatacattgtttcttctattgctccaattaatcaagagaccggcctttttattcattcggcaatggcaggtggaaagtccaaagatggggggtctgttccaaagaagggcagtaggtaaacgaaaaaaaatacttgatttctagaagagggtatcttgtggtaccgctgcttcatcttagatggccatatggccaatataatcggaatccagaggccaaccacgagcattaaatgattcatgctatattttttcaccattttacttttcgctagcatcatggttttgtgaattgtctgcttatgtatctacaaagttgataccaactattgaatgcgtttgatagacacgagggttgtacaaatttctgcttgacaaaacgcattcaaacgcattcaataattattccagtaagtaaataattttgcttgactaattgcttgtggactgtatggaaaagcacacagatagccatatttccatctagtgaagtgtaaataattttgggatgacttttacttgtctgacatataaggataatgatggctcatgttatatgttttcttaaaagcatttccaaattcatcatacttcgttccttcgggaagaagtttcagttatcagtgaagctgactataacttttagaatcttaaaagaggtcttagaatattatgatttacatgtgctgagcaactggtatatttagtactacatccgtcctgaaatgtagctatttctaccacaccctctcaaccaatcacaaccattctccatttaatttcttcacctactttctcttctcaaccaatcacaaacttccttcaatcatttctacctacttccttaatacccgtgcccacctaaaaaaatgctacgtaacattttggggtggaggaagtagggttgtttttagtaatcctctttctctctctcctctgaaaccattatctaactaactaactaactttatttagttagatttatggagtttttactaattccatattttcatcaacgtttctgctgttatttctccaaaacaagatgatctgaactattttcgtccagaagttgaaaaatgtgcatgcttgtgaaaacctatggcatggcaaggatgaaaggagccttagttttgtaatactccgtatttggattcctcttgtgcaatcatgctagtataagtcagaatttccattaaatcattgcaggcagtcgagtgtaagctttatgattaactgaacgttctatatagtttcttggttaacatgattttagaaagagaatttgtgaaagtatagcaaaggtgaaaagtacagctatttgtcaagaaagctgtagggttattagcaactcaccatgctggccatttgggcacactgcttgattctgttttctttttcatatacccgtgtcatctaggtgtatacatgatagataccttatacgtagcgtacttttatccaggtatgttccatcttttttgccgccgtcatttgggaaagagccggacaaaaaggttagtacaattccaatattcttatggctgtctcagtagtcactatggttttctggttaagcattatcttgctgtgcagaaagaagaggagcgtccaaaggaaaaggaaagacgaaagccacgggtaatagacgagttcatggaggagctcaagtttgagaaagagcttcgacaaaagcgtaatcaggaacgcgagcaatggcgtgagggtcgacacactgacacatctgctgtacgcacttcagtatttgacagaataggcctttatttacttgcactagacagcactccaaaagaacttcggagtgctttagatcatgtttagtttgttggctagcattaatgcccattagttagtaacctatatatgtactataggacccaaaacaaaagagcaaaaatacaactttcctcaaatatgaaaaaaatatacctgatcacatgatatcagttagtaacctatatatggacacctgcaaaaaaacaccccttgtttttaaaacaaagattgcagtgctttcacatatatggccacagaagatcctctggggtagggggaatgaggtgtagaacacaccatcatccccaactcctctttttagaagagtaaagatgatgaaatattcttttttttaattgcctaggttgtagaacgctgtttttttcctgtctgcactctataactgtttttttaatataatacgagtagttaataaagaaaaataatgatttcttgcagttttttctgtagaaatctttgtggcattattaatagtttgctatttattaattgatgcctgttactgtgtcctgcagtcctctagccgttttgatgaactaccagatgaattagatcccattgggaaacttccaggatcatttgatgatggggatccacaaaccacgaacttatatgttgggaatctttctcctaaggttggcattctccaatgcgcttgttttgtttatacataaggttaactttacatcatgattaacttgatggttgcattatattatatgacaggtggacgagaattttcttatgaggacatttggtcgttttggacctattgctagtgtcaagattatgtggcctcgaacagaagaggaacgcagaaggcaaagaaattgtggttttgttgccttcatgaatagggctgatggacaagcagccaaggatgaaatggaaggtaatacattttcatgtagtgcagggatcatttttgtccatttgtacaggagctagcactcttgctttcagtggtcttgttttttataatcttatggttcatctcaggtgttgttgtgtacgactatgaactgaaactagggtggggcaaatctgttgctcttccttcacaagcactgcctgctcctccaccagggcacatggcaatccggaataaggaggtgctttgtttgttcttttgcgttgtgtcaaagtttctatgttgagataaccttttattattggtgctgcctgcatgagttggcattgattaccttactcttatatttatatagggtggtactgtcatcttatctggtcctggtggtccacctcttgcatctgttaaaccacagacctcagagctggtaggggatcttttcttactgcagctgtttattgtcacgaaatgcctttcttttgtgctttactgatttgtaatattggcaaagtgcatctatccttgactccttgttgtctttgtatttttgctttgatgaatctttaatggatgaacttttaacaaatcaagatacactgctttccatttgatttctttttctgaatgttttaagtgcttgagtctagtatagaccaataaaaacatttaccacttcccttgtggtgtacagattactatatggaatatccttccatctttccccactcacatcatttatgtaggcctttccattgtgatagcgatccttgtattctattcaactttgttggttatgttctttatttacatgccagccaccaacagaaggcaccattcgtatttgcactggttgttctaaccaattacaaaaatgagtgctaagtatggtttttttgcaggttatcgaactaatatttgctataaccaaaaaaagaaaaaaagcttaactgatcataagatggagaatacaatcagtttttatcaaatatatttaatgatgttatcatgattagattttaatatctgtgaataaatccctccacagagacaaaagtggatgctaagggacagaacaattgtagtcaaaggaatgataaaaaaagaggtgttagggcctgccttatcacttaaaaaaaatgctaagatactttgcttcaagccttaaatttaactcaagtaggcattgcaagtggttctgtcttggatgaggatatctgcagttagcttgaaattgaatgatatctaataagttttaaccaacattttggttattattctaatttcatttggtttaacaggtcctcacaccaaatgttcctgatatagtggttgctccgccagatgatgcacatgttcggcatgtgattgacacaatggctctgcatgtacttgacgggggatgtgcttttgaacaagctgttatggagagaggccgaggaaattctttatttagtttcttgtttgatcttaaatcaaaggagcacacatactatgtttggaggctatactcatttgctcaggtaaaatacattgatgttgttaaattttcaatctctatatctatgatctactaaagggaagtggtgatagtattttgttggaagtgaactgtgatagtaaagaggtttgtcttaattgctgtcttctgatatcttttatgcaatgcagatttatcattgagtttccactatatatgttttggaatacaaaaatctaatagcaaaaatgaaaattcttttagtttgaataaatttatttatctttgtcacttatcggagttcttgttagaatttttttttgttctcctagagttggacttgaaatgatcttcttttgcacctagccacttatcacttgtgttttgcatctatgcattattctgaatgtcaattgttgaagtgataggatggtagcattaactgcatatggtgatattggaatgcagggtgatactttgcagcggtggagaacagaaccatttatcatgattacaggaagtggaaggtaagagagatcacacaattatatttttattccaatatgtattggtcatgcgtccgcccattgaatacgtaatgccatgatattgtattaaatatgatattcatattccagatgggttccacctgctttgccatccagcagaagtcctgagcgtgaaaaagaatctacttttgcggctggtagaagcagggtaagagattgctgcattttgttgaaggccttttgctttgttacggtgaatgtttttgtcctactacaaatacgaattcacattttctcttcagcgtgtcgaagtggagcgcacattgactgattcacagcgtgatgaatttgaggacatgctacgtgcattgacattggagagaagtcagataaaggaggctatgggatttgcattggataatgctgatgcagctggagaggtaaatccttccttgcgctagatttgacttgatcagtcaatttctccctttctttctttatttttaaataaggatgtattatttcattcttgtttaggttgccttcttcttgttctttttttgttttagattttttataaaacaccctttttttggtaaatcacataacatgagagtactcattagtgctttgccttgtatgttcagattgttgaagttcttacagaatctttgacactcaaggagacacccatcccaaccaaggttgctcggcttatgctagtgtctgatattcttcataacagcagcgctccagtgaagaatgcttctgcattccggacaaagtttgaggctgctctacctgatgttatagaaagcttcaatgatttataccgcagtatcactggaaggattactgctgaagctctgaaggtaagttgtattgttctgttttttgagtcctttattttattcctttcttgatgttaccttacgatagcattattttgttgtttctctgcaggagagagttttgaaagttctacaagtatgggcggactggttcttattttccgatgcatatctgaatggactaagagctacctttcttagatcaagccacttaggggtcatcccttttcactctctatgtggtgatacaccagaaattgaaaagaaagctagctctgaggacggcagtgatggatttaggctcaacgaagatggtgccttggccacaggaaaggcagcggcaacaagggagctgttagggcttccgctagctgaacttgaacgccgttgcagacataatggcctctcgctatgtggtggtaaagagatgatggttgccaggttgcttagcttggaagaggctgagaaggaacgagtatatgagaaggacgcgggcattaaatatggacaaggagaatcgcatagaactggaagagatgacattgctgtgaatgctcgtaatgcttctagacctggagaaggtactgatagtggtgaatcagacatgttgggtctctctcattatgctatggaagcagggtacaaacgctctaatgaatccacacccgctgaacctgttccaagcaagaagccaaaagttgaccctgttttgcccgcttcaaaatggagtcgagaggatgatgtcagcgatgatgaagatagaaaaggtggcagaggcttaggattaagctattcatctggtagcgatattgctggtgattctgggaaagctgatgcaacagaagttagtactgatcactcgaatcatcaccaggatacgattcttgatgaagagcataggtaccttttgtcatgatttagcatgcaattcaattacattttttaatcatgtactccgtattagccaattacttcatacagtttataatgtaattgcacatgccttgtgatctgcagaaagaagttaaggcagattgaaattgctgttatgcagtatcgtgaatctcttgaggagaagggtttgcgaaacacagaagagattgagaagaaggttgccagccaccgtaggcgtcttcagtctgaatatggtttatcattttcaaatgatggtgcaaacagcaggcgctcttctggtatgtaagaaggcagcaatgacatatcctctgcttgttggataattgcttttttgttgtttttgaacatacatccttcacttctgaattctgatactagtgaagaatatttttttttttgatatttggctacctttattatctgcgtgatatatcctcatgaaaagcatcacttcctttttttcagagaggacatcgtcggagcggagagataggcatgatgattcttcaagaaagcgtcatcgaagcctgagcaggagccgtagtcctccaaggagatcactggaaagagatcgagagcacaatcgcaacagagacacagacagatctcatggtaatgatgctggacgagagagagacagggtacgtgaaaaaagcgcaagccgagggagggatgatcactatgatagaagcagagacagggagaaggacaggagaaagggaaggtgattgatgcctgcaaaatctcttgcattcatccccttgcctgaataaggtgcagtgtgatatcctgtgccaggttgcatcagttaaaatctgttgcatatatgaagagtatctggcctgccacctgccgcatggcttgaagaacctgtgtattgagtgccctactcatgtagcttgaaaaacagggacagcgtgtgaaaaatagaatattatcaagtggaactgcggaagtagtgcattgaaactctccgccttgtggtggacgaccgcagctaggaactttgctttggtgacaaatgaagtcaagagagttgctttggcgacattgtccatttttattcattgatgaaatcaacgagtgtagttgact</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0179900, RefSeq:Os02g0179900