Os02g0236000

From RiceWiki
Revision as of 02:22, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0236000| Description = Similar to Aspartate aminotransferase (EC 2.6.1.1) (Fragment)| Version = NM_001052923.1 GI:115445216 GeneID:4328828| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os02g0236000

Description

Similar to Aspartate aminotransferase (EC 2.6.1.1) (Fragment)

Version

NM_001052923.1 GI:115445216 GeneID:4328828

Length

4284 bp

Definition

Oryza sativa Japonica Group Os02g0236000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:7735618..7739901

Sequence Coding Region

7735768..7735965,7736096..7736181,7736746..7736952,7737169..7737274,7737536..7737640
,7737723..7737895,7738335..7738494,7738583..7738678,7739334..7739428
,7739515..7739587

Expression

GEO Profiles:Os02g0236000

Genome Context

<gbrowseImage1> name=NC_008395:7735618..7739901 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:7735618..7739901 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgatgtcgtcgtcccgctcggcggccgcgatccgggggcggcgggtcggggcgctggcgagggcgaggaggcacgcgacgagggcgatggcgtcgctgttcggccacgtcgagccggcttccaaggaccccatcctcggcgtcaccgaggccttcctcgccgacccctcccccgacaaagtcaacgtcggcgtcggcgcctaccgggacgacaacggcaagcccgtcgtgctcgagtgcgtgcgcgaggccgagcgccggatcgccggcaacctcaacatggagtaccttccaatgggaggaagtataaagatgattgaagagtcactaaagctggcatatggtgaggattctgatttcatcaaagataagaggattgctgcggtgcaggctctttcaggcacaggtgcatgccggctctttgccgatttccagaggcgtttcttgccaaattcacagatctacatacctacacctacatggtccaatcatcataacatttggagggatgctcaagtacctcaaaggacattcacctattaccatccagagtcaagagggcttgatttcgcaggactgatggatgatattaagaacgctccaaatggttcattctttttgcttcatgcttgtgcccataatcctactggagttgatcctacagaagaacaatggagagagatatcctaccaattcaagataaagaatcatttcccattctttgacatggcataccaaggatttgccagcggtgatccagagagagatgctaaggcaatccgaatcttccttgaagatgggcatcaaattggatgtgctcagtcatatgcaaagaacatgggactgtatgggcaaagggcagggtgcttgagtattctgtgtgaggatgagatgcaagcagtttctgttaagagccaattgcaacagattgcaaggccaatgtacagcaacccacctgttcatggtgcactggttgtctccataatccttaatgatccagaattaaagagtttatggttgaaagaggtcaagggtatggctgatcgaatcattggaatgcggaaggcactccgggaaaatctcgaaggcctaggttcaccattgtcatgggatcacatcaccaatcagattggaatgttctgctacagtgggatgacacctgaacaggtggatcgcttaaccaatgaataccatatttacatgacccgtaatggcagaataagcatggctggtgtaacaacaggaaatgtggcgtatttggctaatgctattcatgaggtcactaaaacgaaatga</cdnaseq>

Protein Sequence

<aaseq>MAMSSSRSAAAIRGRRVGALARARRHATRAMASLFGHVEPASKD PILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIAGNLNMEYLPMGG SIKMIEESLKLAYGEDSDFIKDKRIAAVQALSGTGACRLFADFQRRFLPNSQIYIPTP TWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDDIKNAPNGSFFLLHACAHNPTG VDPTEEQWREISYQFKIKNHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIGCAQS YAKNMGLYGQRAGCLSILCEDEMQAVSVKSQLQQIARPMYSNPPVHGALVVSIILNDP ELKSLWLKEVKGMADRIIGMRKALRENLEGLGSPLSWDHITNQIGMFCYSGMTPEQVD RLTNEYHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK</aaseq>

Gene Sequence

<dnaseqindica>151..348#479..564#1129..1335#1552..1657#1919..2023#2106..2278#2718..2877#2966..3061#3717..3811#3898..3970#atcaaagcgagacaccttttcttttggcctccttcctcgcgaaaaccaccaaaccaaaacccacacacccacagcttttctccccctcactgctttgctctccagtctccacctcctcctcctcgctgccgcgccgcccatccgccagccatggcgatgtcgtcgtcccgctcggcggccgcgatccgggggcggcgggtcggggcgctggcgagggcgaggaggcacgcgacgagggcgatggcgtcgctgttcggccacgtcgagccggcttccaaggaccccatcctcggcgtcaccgaggccttcctcgccgacccctcccccgacaaagtcaacgtcggcgtcgtacgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcattgggatccccgatctcgcttgattctgacggagatgttgggcggggatgctgaaactgcagggcgcctaccgggacgacaacggcaagcccgtcgtgctcgagtgcgtgcgcgaggccgagcgccggatcgccggcaacctcaacatgtcagaacgagatccctccctgtctcttccagttagcttcaatgcttgattacttgtgcatgtgcggatctgagctatacctgctgtgttttgtagatatgagcttcaataatctttggttcttgattcatttttagttccattctgaaataaaagcatgctgataccgctggttcgttctgaagcgtgatctatcactagtattttgttttcaaacatgatctggatcatgtgtaaagcttccttttccttcttcaatcacgcaatgtatgtacgcttgatgcgaaaaaaaaaattattgttgtcccatcctgccgcggtttagacctcctgtaggcattctgtggtaaaatggtttccagatgcttctttatgctcttttgtggtgtggaagtaaacatcattgcagtacagattagacactccaatccttttttttttttgtcctgaaaaaaatgatcaactaaagcataatactgtcttgcagttgatgctacacctgttttagtgctggaccgttggaggttgccttaagttctaatttccactaattttgtaaaacagggagtaccttccaatgggaggaagtataaagatgattgaagagtcactaaagctggcatatggtgaggattctgatttcatcaaagataagaggattgctgcggtgcaggctctttcaggcacaggtgcatgccggctctttgccgatttccagaggcgtttcttgccaaattcacagatctacatacctacacctacatggtccaagtgagttggaatcctgctgagacatgaattgttgttgttttctttacatctaagaaaaatctcttaaagaaagaaataggaagagaaaacatagatgtagatggtgtgtattactgtctctacatgatatggtaggcacctgtgattcttgctctccaatattgttaacatcatcagtatctaacattctaacctcagtgtgtgtaacttctccagtcatcataacatttggagggatgctcaagtacctcaaaggacattcacctattaccatccagagtcaagagggcttgatttcgcaggactgatggatgatattaaggtgattcgtttctccagtattgttagaaagatatcttacttttaggaattattacattgttgctggtatctgtagcaagatcatggatattgtttgaaattagatatttgtagagtcaatactgatttagctttctttctcattgataaatgataagttttaggtacacttagtttttctcactttcttataggtgcttctgacctgttgatgggtttcctatagctccttttaatttatttttgttcctctcatctgcagaacgctccaaatggttcattctttttgcttcatgcttgtgcccataatcctactggagttgatcctacagaagaacaatggagagagatatcctaccaattcaaggtagcagaagtgaaaaggactggctttttgttggtgttatcaccaacgacagatatcacattttccttatgtgttttgacagataaagaatcatttcccattctttgacatggcataccaaggatttgccagcggtgatccagagagagatgctaaggcaatccgaatcttccttgaagatgggcatcaaattggatgtgctcagtcatatgcaaagaacatgggactgtatgggcaaagggcagggtgcttgaggtattcactcgcctagtgtcatttatgcttgaaagttatatagttgtgcaatgcagtgctcctatgctctggatataattaagaggcacaaaatttacatcatgttaactactgttgattcaggatttgtactgttttcttcagggagagcatagcaaagctactctctgtattgcatgactaattccatgcatggtccttgaaaatgaaacgtgtcttagagcattagttatttgatttctcaaaaaaaaaaggaatttgcaagtggaactcatatctagcgagactgaaatattttcccttcaggaagccctcctgttccattaaggggaagagtatataacatcaaatagaattgagtgatccaatttgttatcttttctttaaacaatgatcatactctaatgatcataaaactgattttgtattgctgtttcagtattctgtgtgaggatgagatgcaagcagtttctgttaagagccaattgcaacagattgcaaggccaatgtacagcaacccacctgttcatggtgcactggttgtctccataatccttaatgatccagaattaaagagtttatggttgaaagaggtcaaggtaagaagtcttaactacgtaagttcctaatagattaatctatgtgaagcatggaaaggagtttaatatcgccactgggttgtctcagggtatggctgatcgaatcattggaatgcggaaggcactccgggaaaatctcgaaggcctaggttcaccattgtcatgggatcacatcaccaatcaggtaaagaaatcatgaaaatgtaccatttctgaatatgaattcagtgacatgcaaattataccagttcaaagtagttgccagcatctccaaggcccacaatagatatagtcaggttgtaccataaacttgttggagtttggttcattgaggtattagttcatgtggactgatgtactctagtgctggtcctgttgcttgaacttccagcataattgcaaactagtcaaagtggattttgtatcataaatattgtgttctaactcgaggccttgtcaaagtggttgtcttgagtcccaactaatcaattagaaatggataattgtacaatagctattaagtcttgtctgggtatagttgattcggtaagtaacagtgtcagtcaaaaactagtaagaaccactagcttcactcgttctccttgtaagcttacaagtacagacatatccattttgtacgattgatatatgttgggcaagaattatgtgcaacttaaatgtccatttacccatacttggttcaaattttcaccatgtatgcaacttgatatcattgtgtgttatgttcactcagtctctatggagattgatattccacattcagcctaatattattgttagttatatggtgaatattaaaaacgtaagcgtatttgcagattggaatgttctgctacagtgggatgacacctgaacaggtggatcgcttaaccaatgaataccatatttacatgacccgtaatggcagaataaggtacaataacagtacttttagtttttcatgttgctgaatctttgttttaatcgaataaaaatctaactttctgtcatttctttcagcatggctggtgtaacaacaggaaatgtggcgtatttggctaatgctattcatgaggtcactaaaacgaaatgaagctacttcctcttccctcttcggccaatgaaatgaggcttgcaagcggcggcgttttttttttggggggtggtctattgacctttaagatggttgtactagagaaataatccagtgaacatgctggtgtttctccaacttcggattttccctgtatggaggagagaactagaaacctacccaattttgagagctatagatgccgatcctgttatttcaatcgtcagatgttatgcctgtggcagcctggcaggtcacctcagaaacagagatatgtgaaagagaataaatgcaaatgagctgagcattttgac</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0236000, RefSeq:Os02g0236000