Os02g0258300

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Revision as of 02:23, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0258300| Description = Zinc finger, FYVE/PHD-type domain containing protein| Version = NM_001053010.1 GI:115445390 GeneID:4328928| Length =...")
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Gene Name

Os02g0258300

Description

Zinc finger, FYVE/PHD-type domain containing protein

Version

NM_001053010.1 GI:115445390 GeneID:4328928

Length

5273 bp

Definition

Oryza sativa Japonica Group Os02g0258300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:8967208..8972480

Sequence Coding Region

8967428..8967482,8968135..8968358,8968445..8968505,8968624..8970661,8972193..8972343

Expression

GEO Profiles:Os02g0258300

Genome Context

<gbrowseImage1> name=NC_008395:8967208..8972480 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:8967208..8972480 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggcattgggagatatggagggggaggaggggcagcggcggcagcagcagatacgggtggtgcggtgccccaagtgcgagaagttcttgccggagctccccaactactccgtctacgtctgcggcggatgcggcgccactctccaagcaaagaagaactcagcatctgagaattcctcagagaaatctgatggtggacatgtgaagtaccttgaagtgctggagagttcaccagataacaaaggagctgcatctaaagacacttgtgaggctgcccaagaaggagaagccaaaaatggagaagctaaagcagaagagagacaggtacttcttgacagaatggcagcttgtgatgatagccgaattccaagagaaccaaatgccttgaagcttgaggcttcacttagagatgacagcagggaaattcgggaggccaagtaccggcgcatccgcagtgaggacaaaggagaagcaaaacacacagtgagagccagagacagatcgccaagatcagttgttgatgccatccctccgaatgcatatcctgcagaaggcccgtctgactaccatattaagtcaagattcagacataccaatggtgagcaagctgatatgagaaatttggagggcctaaacagagtcaatggtcttgaaaaagaccgtgctgatctgttacggatgcttgatgagctgagggatcaggtgcagagatcctgtgagatcaccaacaagccaagtggaagtacttctacagataaagcggtggatgcctcagggttatataatcctcgtgagcggttgagtcggttacgacatggttcacctcagttgcagcggagtggttctcagcagtcaccatccttgaatgggcaagctccttgcattccgcaagcttatgctccaggaactgctcagcaagatcttcatggatacggggagccaatggcacacatgggggctccaagctatcctgttggcacatatccatggagaaattttgataattatttttatggacagtatgatcctgaccctctgatctcttaccaccatgatggcttctaccatcagcctgcctgttcttgtctacattgctaccaccgtgagttcttacctgttcaggggcctcctctgggtttcaaccatcgcagggtaccaccgtatgttatgaataatcctagagtttacccggttgatggtcctgcaatgtttggcacacagaattacaattcaagagtcaacgcttcaatgcagcgcaatcacatgagggccgctatgagtaaaaaacctgcacagacttgtgaaccgattgcatgtggtgccccattcactatatgctacaactgctatgaagtactgcaacttccgaagaaatcccccgtgccagggaaggatgagtacaaattacgttgcgggtcatgctcacatgcgcttgtggtcaagcttgatggaagcaggcttgatgtttcagcaccttcacctatttcacacatatctggcggcagcaaaattagttccaatgatggccaaggaagcaatgcgaattctgctccacatgagagggtgcttccactttatagtttttctgcagcaagtcatggttctcaagacctaccctcgaactcaagtgaagctgaaaaaatgcaagggatatcgtcttcttgcagcatttctgaagatgagaacagccctgcgagatctaattcccagagggacacccctgggtctagggatcttcatcctgaagctgaggtgtctacccgtgttccaagtttacatcttcgtgatcattttggatactcgccatctgagaaggtagttgatggatcagggaaaggaagcagaagtactcgatctgaacatgagaaggctgtgttgacagaaagtttcaagcagaacactgtaaaagatgtatcagtagtgaacataatggacttgtcggatgatgagtatgatgatcctgactacatgcaagatcgaggtgatgtggcacaacctgtagatcaccctcgggccgtgaaaacgggtgattcatttttcaccaatctcataaagaagagcttcaaaattaacaacggaatgggcaatggcagagcaaaggttttcattaatggctatcccatctctgatcgggcggtcaggaaggctgagaagatagctggaccaatctatcctggtgaatactggtatgattaccgtgctggtttctggggtgtaatgggacagtcttgcctcggcatgataccgccatatattccagaactcaattatcctatgcccaagaaatgcgctgctggaaatacaggtgtatttgttaatgggagagaacttcaccagaaggatttggatttacttgtgggtcgaggactcccagattctcccggtagatcatacagagttgagatgtccggtaaagtgtcggatgaagtctctggtgaggagctgtattgtctcggcaaacttgcaccaaccgtcgagaaaatgaagcgcggatttggcatgagagtccccagaatcatcccttga</cdnaseq>

Protein Sequence

<aaseq>MEALGDMEGEEGQRRQQQIRVVRCPKCEKFLPELPNYSVYVCGG CGATLQAKKNSASENSSEKSDGGHVKYLEVLESSPDNKGAASKDTCEAAQEGEAKNGE AKAEERQVLLDRMAACDDSRIPREPNALKLEASLRDDSREIREAKYRRIRSEDKGEAK HTVRARDRSPRSVVDAIPPNAYPAEGPSDYHIKSRFRHTNGEQADMRNLEGLNRVNGL EKDRADLLRMLDELRDQVQRSCEITNKPSGSTSTDKAVDASGLYNPRERLSRLRHGSP QLQRSGSQQSPSLNGQAPCIPQAYAPGTAQQDLHGYGEPMAHMGAPSYPVGTYPWRNF DNYFYGQYDPDPLISYHHDGFYHQPACSCLHCYHREFLPVQGPPLGFNHRRVPPYVMN NPRVYPVDGPAMFGTQNYNSRVNASMQRNHMRAAMSKKPAQTCEPIACGAPFTICYNC YEVLQLPKKSPVPGKDEYKLRCGSCSHALVVKLDGSRLDVSAPSPISHISGGSKISSN DGQGSNANSAPHERVLPLYSFSAASHGSQDLPSNSSEAEKMQGISSSCSISEDENSPA RSNSQRDTPGSRDLHPEAEVSTRVPSLHLRDHFGYSPSEKVVDGSGKGSRSTRSEHEK AVLTESFKQNTVKDVSVVNIMDLSDDEYDDPDYMQDRGDVAQPVDHPRAVKTGDSFFT NLIKKSFKINNGMGNGRAKVFINGYPISDRAVRKAEKIAGPIYPGEYWYDYRAGFWGV MGQSCLGMIPPYIPELNYPMPKKCAAGNTGVFVNGRELHQKDLDLLVGRGLPDSPGRS YRVEMSGKVSDEVSGEELYCLGKLAPTVEKMKRGFGMRVPRIIP</aaseq>

Gene Sequence

<dnaseqindica>4999..5053#4123..4346#3976..4036#1820..3857#138..288#aaggcaagaggggaagctttgcatttgcccggccgactctcttcttggttcttggttgtggcgtcggcgtctccgtgttgtttgggctggccaccgttgctcgccgttcttgggggcaggcaaacggcaccggcggtatggaggcattgggagatatggagggggaggaggggcagcggcggcagcagcagatacgggtggtgcggtgccccaagtgcgagaagttcttgccggagctccccaactactccgtctacgtctgcggcggatgcggcgccactctccaaggtcctcctcccttctcttctttcccctccctctctctctctctctctctgttcttcgcgttgcacctaactgttcccttctcattcgccattgatctcgcttttcggtttgtttctctcctttgagagcacccgcaatggtaaaataaggtgctatctagactagattaatagtaaaccatctcaatagtatgtctacatgggtatctataactctctaatacattgtctcgtttttctctatagactatctccaggttagtagatagctttgctctctctctctccatttaatctcttccaagtaggaaaatatactgacatggatctcttatagagagcctatacataaccattgtgggtgccctgattaattaactgttgatgtggtgaaatgtttgtattatttttttttgtcactgaaggttcgtgatgaaatcaggttgttcgccatcgattttcttgctttgttttggtatatatatatgcacgcggagtttgagactcaattttgtttgcttccacacggtaaaggttccatttctttttttttagcgcgcctctttggcttcagccatttcggcggttctgctcgctctcctattggctttgcattgggttttcttcccttgttgtgtgcttgatttgattagcattgtttgacgcaatcgatgcatgtacaagagcatgtttggtactactagtagtagtagtagcagtagctttgcatccctacgtttaatttacttatttattttcaggccgtggcttcaaagcccagttatcttgtggggcgaatttgtttatttatttttgtgtttcggtccggacgagaatgttcatgtgtttgtaagctcttcccaactggttaataatgtttgatacggagtattagtgggtttatgcaacgggctagcttcacaaaacaattttttttcgaaaattctatttactctacatgaaagctttattttaccctgcattaacatgctggtttggttacttgagaatcatgcatttctgtcggttgacgccaatgagattataacacatccttcgtggtgaaatttaactaatcattctgggaatttgtctcctttttttttttgggggggggtttgttgtccccaaattttaaacgctgaaacatgttgaattttcccggccctaatgtttgtttttttttcagttaaagttgtaagcccttttaaaatatgaaatggaatttagctagtaattattttgaacaattcacttggtgctatttttcattcagttctcatgttatattatcaagtgcattttcgtattagctgctcatccgtaggattgatgtcatgcaagaattaagtgtgtacttgaaagtctactttttttttgtacagatagtctacagaatcagttgcattaaattctctctatctttcaagggttttttgaaatcttttcaatctgcatatttagtcaaaatttacattaaagttgcaatatccgaaagtaatattttactgcatttatggtccattttgcagcaaagaagaactcagcatctgagaattcctcagagaaatctgatggtggacatgtgaagtaccttgaagtgctggagagttcaccagataacaaaggagctgcatctaaagacacttgtgaggctgcccaagaaggagaagccaaaaatggagaagctaaagcagaagagagacaggtacttcttgacagaatggcagcttgtgatgatagccgaattccaagagaaccaaatgccttgaagcttgaggcttcacttagagatgacagcagggaaattcgggaggccaagtaccggcgcatccgcagtgaggacaaaggagaagcaaaacacacagtgagagccagagacagatcgccaagatcagttgttgatgccatccctccgaatgcatatcctgcagaaggcccgtctgactaccatattaagtcaagattcagacataccaatggtgagcaagctgatatgagaaatttggagggcctaaacagagtcaatggtcttgaaaaagaccgtgctgatctgttacggatgcttgatgagctgagggatcaggtgcagagatcctgtgagatcaccaacaagccaagtggaagtacttctacagataaagcggtggatgcctcagggttatataatcctcgtgagcggttgagtcggttacgacatggttcacctcagttgcagcggagtggttctcagcagtcaccatccttgaatgggcaagctccttgcattccgcaagcttatgctccaggaactgctcagcaagatcttcatggatacggggagccaatggcacacatgggggctccaagctatcctgttggcacatatccatggagaaattttgataattatttttatggacagtatgatcctgaccctctgatctcttaccaccatgatggcttctaccatcagcctgcctgttcttgtctacattgctaccaccgtgagttcttacctgttcaggggcctcctctgggtttcaaccatcgcagggtaccaccgtatgttatgaataatcctagagtttacccggttgatggtcctgcaatgtttggcacacagaattacaattcaagagtcaacgcttcaatgcagcgcaatcacatgagggccgctatgagtaaaaaacctgcacagacttgtgaaccgattgcatgtggtgccccattcactatatgctacaactgctatgaagtactgcaacttccgaagaaatcccccgtgccagggaaggatgagtacaaattacgttgcgggtcatgctcacatgcgcttgtggtcaagcttgatggaagcaggcttgatgtttcagcaccttcacctatttcacacatatctggcggcagcaaaattagttccaatgatggccaaggaagcaatgcgaattctgctccacatgagagggtgcttccactttatagtttttctgcagcaagtcatggttctcaagacctaccctcgaactcaagtgaagctgaaaaaatgcaagggatatcgtcttcttgcagcatttctgaagatgagaacagccctgcgagatctaattcccagagggacacccctgggtctagggatcttcatcctgaagctgaggtgtctacccgtgttccaagtttacatcttcgtgatcattttggatactcgccatctgagaaggtagttgatggatcagggaaaggaagcagaagtactcgatctgaacatgagaaggctgtgttgacagaaagtttcaagcagaacactgtaaaagatgtatcagtagtgaacataatggacttgtcggatgatgagtatgatgatcctgactacatgcaagatcgaggtgatgtggcacaacctgtagatcaccctcgggccgtgaaaacgggtgattcatttttcaccaatctcataaagaagagcttcaaaattaacaacggaatgggcaatggcagagcaaaggttttcattaatggctatcccatctctgatcgggcggtcaggaaggctgagaagatagctggaccaatctatcctggtgaatactggtaagcctgcaacttctgtttgcctccgatcagtttagacatattttagttttaaatattactaaatactgtcagcaccattggcaatgacattttgttcttatgtcctattgtttaggtatgattaccgtgctggtttctggggtgtaatgggacagtcttgcctcggcatgataccggtaagagcaattacagtgtagctgatatgtttgtcttaccctgatatgttttgatcaaagtttttggctgaatgtctatgctgcagccatatattccagaactcaattatcctatgcccaagaaatgcgctgctggaaatacaggtgtatttgttaatgggagagaacttcaccagaaggatttggatttacttgtgggtcgaggactcccagattctcccggtagatcatacagagttgagatgtccggtaaagtgtcggatgaagtctctggtgaggagctgtattgtctcggcaaacttgcaccaacgtaagtaacttaacaacatcaaataatgccattgtacttcaaaattctaatgcgcatttagtaatcactgtttcaatcattgtagagctgctgtcagaaaattcatttcttctgagtatttgcttggctggtgaatgtattataccattgcatgttttgggtttttgtcactagcttatctgctatagtgtaacttagaaacaagaaggcctataaaccatggaaagagaagtcatgttcgtatagttttgtaatgtggtagcggacaaagtgaaacatgccgttccccattttagtacttgctattgaaagatcttaaagtcatcgaataaagacaaacaggcatatcatttttaatagagaaatattgccacctctaagaaagctcctattgctgatgattactttcatgggttaacatagagatgcaaaatgtgccaaatatcgatcgttgagctgggaacatcgagaaagatgcaatctaaatctatatggttatataacttaatattatcaggaaatgtttcgtgacgttggggcctttcttgtgcattttatatgcaatgctacctcaagttatttatttctttgaagtgaaccaccctctgtttcttacttcgaagttctacttacaactgatctctgtaaacagcgtcgagaaaatgaagcgcggatttggcatgagagtccccagaatcatcccttgagatcagtgattcttcggcacaactgtagaattcaagaccccattttggatgctgtttcggttcttctgcgaaatgctttgatgcttgttggttgttgattgtccagccgtctgtttgcgtggtctcatgatctgagatgtataatctgtggttgctttgactggtgcttgtctgaaaaattatccaatggaaattttgcaatgtgaagtttgttttgtgc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0258300, RefSeq:Os02g0258300