Os02g0468400

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Revision as of 02:29, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0468400| Description = Lipid-binding START domain containing protein| Version = NM_001053357.1 GI:115446084 GeneID:4329333| Length = 4882 b...")
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Gene Name

Os02g0468400

Description

Lipid-binding START domain containing protein

Version

NM_001053357.1 GI:115446084 GeneID:4329333

Length

4882 bp

Definition

Oryza sativa Japonica Group Os02g0468400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:16549328..16554209

Sequence Coding Region

16549357..16549661,16549766..16549916,16550992..16551252,16551927..16552008,16552662..16552855
,16553345..16553659

Expression

GEO Profiles:Os02g0468400

Genome Context

<gbrowseImage1> name=NC_008395:16549328..16554209 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:16549328..16554209 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgggggagacggattccacgccgatggccgcggggcgcgccgtgccgccgccgccggaggccgccgccccgcggctcctcctcctcggcggcggcgccgagctctggcggcccgtcgcccgcggcggcgggtgggccaccgccgcggcgctcctcctgctcctcgcctcccacctctccgtcctcctcctccgccgcctccgcctccgccgccgcctccgacctgctgacgccgtctcctcctcctccgccgccgccgccgccgtcgtcaccgcggactccgccccaggctccgccgcagggatggatggccttgtgacggagggcgatctgcgggagctggtgggcaacctcggggtggccgcgcgtgagccggagagggaggggtggcagcaggtggtcgccaaagggaacgatgacgtctcctacagggtgtggtgcgacaagcccatggaaggccctcctagatatcttagtgtgacaacatatgagagatgctcaacagagctattgagggacttttacatggataatgagtatagaatggagtgggataacactgtgataaagcatgagcagctacagtttgatgaaaatagtggaatagagatagggcgtacaatcaagaagtttccgctcttaacaccaagggagtacatattggcatggcgagtttgggaaggaaatgacaagtctttctactgtttggtgaaggaatgtgagcatcctgttgcaccaagacagcggaaatttgttcgagtgcaacttttgagatcaggatggtgcattaggaaaatccctggaagggatgcatgccgaattacagtgctgcatcatgaagacaacggcatgaacatagagatggcaaaactggcatttgccaagggcatttggaattacatttgtaaaatgaacagtgcactacgtcgctatcctcaacgtaacatttcatcaatatcaattctgaccatgcaaagacttaccaagaagtttcctcaggccttggagactgatgtagatgcaaatcatcatcctcaaggaaatacaagagcaaatgttgttcctacacattttgcaagaacttcatcacgccaacagccagggaagaagtcatctcgggcaacgattgcaagtggacttctgcttatcggaagcattgtttgtctatcccgaggccgatctaaccttggggcccagcttgcaatggcattcttcttgaagaaggcgttcaaacaagataaaggatcgagctcgcagaggagcataagtagaactgatgtgactgaacccaggcacttggaatag</cdnaseq>

Protein Sequence

<aaseq>MAGETDSTPMAAGRAVPPPPEAAAPRLLLLGGGAELWRPVARGG GWATAAALLLLLASHLSVLLLRRLRLRRRLRPADAVSSSSAAAAAVVTADSAPGSAAG MDGLVTEGDLRELVGNLGVAAREPEREGWQQVVAKGNDDVSYRVWCDKPMEGPPRYLS VTTYERCSTELLRDFYMDNEYRMEWDNTVIKHEQLQFDENSGIEIGRTIKKFPLLTPR EYILAWRVWEGNDKSFYCLVKECEHPVAPRQRKFVRVQLLRSGWCIRKIPGRDACRIT VLHHEDNGMNIEMAKLAFAKGIWNYICKMNSALRRYPQRNISSISILTMQRLTKKFPQ ALETDVDANHHPQGNTRANVVPTHFARTSSRQQPGKKSSRATIASGLLLIGSIVCLSR GRSNLGAQLAMAFFLKKAFKQDKGSSSQRSISRTDVTEPRHLE</aaseq>

Gene Sequence

<dnaseqindica>30..334#439..589#1665..1925#2600..2681#3335..3528#4018..4332#aacgcggttcacacgcacgcagggctaacatggcgggggagacggattccacgccgatggccgcggggcgcgccgtgccgccgccgccggaggccgccgccccgcggctcctcctcctcggcggcggcgccgagctctggcggcccgtcgcccgcggcggcgggtgggccaccgccgcggcgctcctcctgctcctcgcctcccacctctccgtcctcctcctccgccgcctccgcctccgccgccgcctccgacctgctgacgccgtctcctcctcctccgccgccgccgccgccgtcgtcaccgcggactccgccccaggctccgccgcagggtttggtcccctccgctccttggccctctcgcgcggggttttttttttttgagcgagaatgtgatttgatcagggtttgctccgtgggggtgtggatttcgcaggatggatggccttgtgacggagggcgatctgcgggagctggtgggcaacctcggggtggccgcgcgtgagccggagagggaggggtggcagcaggtggtcgccaaagggaacgatgacgtctcctacagggtgtggtgcgacaagcccatggtagctctatctcctcctgttcttgttgaatccattgatcttgttttatattgttgcgggtcactggaaatgttttattgttttatattgttgctggccaatggaaatgttctaatgatctgcttcttatcgtaaggcggattgtgaatttactctgcctacttgtgtccatgcgatttactagctgcgaaaggccacaactaatgcttactgtatgggtagttcatacttcatagtgcaagagtacaagtcgatcgagaaaattaagattgtaggtattagaataattcaaccccatccaccctgccttaatgctttaaaagtggatgcgtagttgtagggtgtcatttgatatcactgtttggagctaattttggtatcaccttctcaatatcccttggtctattcccctaatgggcttaaatttttatgggacggtgggagcatgccaactctgtgggtgagatcttagaaccacactagaattattgatattggtttatgtgtgctctaggtacttgatcatgatttttttggttaagaattgacaaaagaaactaaagctatttaggctctgtttgcaagaacatgttcccaacccaaacagtaaaaacggaacacggagcggtccattagcacgtgattaattaagtatttgttaatttttttgttcaaaaatggatcaatatgatttttgaagcaactttcgtatagaatttttttgtaaaaaacacactgtttatcagtttgaaaagcgtgcgcgtggaaaacgtaagtatggagttgggaaccagcttttgcaaacaaagccttaatactttagaattcaaaatagttgggggattaattactgatcagctgatgcagtctacgtgaagttacctagggtttaggaattttcgctgggttctgccatgattggattttgatgcctggtttcattttgtgatgctatttccatgatgtcctttgacccattacatttttgggaacatcacaattcccaagattctatttgcttgctcaagtttaacaattcagtttctttatgtaacagttatattcccctatgcaggaaggccctcctagatatcttagtgtgacaacatatgagagatgctcaacagagctattgagggacttttacatggataatgagtatagaatggagtgggataacactgtgataaagcatgagcagctacagtttgatgaaaatagtggaatagagatagggcgtacaatcaagaagtttccgctcttaacaccaagggagtacatattggcatggcgagtttgggaaggaaatgacaagtctttctactgtttggtgaaggttagtcacatctctctctccatcctttctcgtcattaaattctcaactgtttaaaagcgatattttttttgcgaggtaaaagtgtgatatactttggtgtcattgttttggcttttgtacttatgcagtaatgtaaacattgtagattattcgttcagtaatgtacttatataaggtctaagctttcggtaatgctcatggagtcagttgcagaagaaaccaatgatgccacaattgttgattgtgtcctaactacatcttcaattctaatatgaaattcaagttgaattggttttgatcctatgcttgacatttttaaatgaactaaggacctgtttaggatgtgggaatttcacctattgtgggaagtaaactgctccctgtagaattcctgcattctgcattgtaaacaaacagcctaaaacaccactgatatagccgagaatacacaaattctagggataatgcactgtacacgcccaatttgagaaaatacaaaatcagttgaaatctaattgaatatacaaccttagaatgaactcaccaatttcacacgagtatttcatatgcaattttgatgacattaaccttatccccattatcttattttctttgaccactcagtcattttttacaatttgttctgttgttgccaatttgttaacctggacaggaatgtgagcatcctgttgcaccaagacagcggaaatttgttcgagtgcaacttttgagatcaggatggtgcattaggaaaagtaagtcaactctaatattcatagaaggccttctttttgcggtccttattgagtttagaatgacctatcttgtttcagtggtatgtattgcgtcgatgtaatttctaaaaaatacgcatagaataacttcaaatgatctaattgtttggtaatgctttaccagcctctagtatctacagtatatattttatactttaatatttagattgaaatgcagttggatgaatttgttagctgataagaatgaaaggcttgtaatttttgtttctgcatccatgagttaatacactaatagttctgttgtacttgttaaccaaacagaatgggaagagttctactgaagctataagcaggctgtgtatcaactgaaaataaaacaaatattcttttaagtgtttatttttgaagaataaataccattgtcacacatttcttctccttgccatcaattttctttatgaccttgaatatgcaactgaaagttgagccattatgacatgccatttttgctagcttatctcgactctcaattttctttgttataattatgatcaaaaggcatctataaattgttattttctggggatgtatctcatatatgttcaactacttttaaatttgatgttgcttatatgctttatgttactttacagtccctggaagggatgcatgccgaattacagtgctgcatcatgaagacaacggcatgaacatagagatggcaaaactggcatttgccaagggcatttggaattacatttgtaaaatgaacagtgcactacgtcgctatcctcaacgtaacatttcatcaatatcaattctgaccatgcaaagacttaccaagaaggtaaatagtcttgacctattgaccaatctgtggttgatatttctttaggaattggtctatttatgttcctataagcatgaatctgtttttgttaaaaatcatatgtacagtgtgtgtccagtttattttatttgttttatgtatacaatcttttaggtttgaggataatgattatattttttgaatttagaatatatgttatagccagtcgagatcataaattcatacaataatttatgtgcttatgttgtatgctagcctgctgaagcctaccatgtcttgtagattgtctgtcctttacttttgttcacaaattacagctactgaaataggcaatgataatctttctggagatagaatctgttttttaaagtttgaattatgtagtatgtaccccccacaaacctgtgaacggtttactgtcctattatttcgaattatggccattttatggttcatgctctgatgacgcttgtttttgcacatcagtttcctcaggccttggagactgatgtagatgcaaatcatcatcctcaaggaaatacaagagcaaatgttgttcctacacattttgcaagaacttcatcacgccaacagccagggaagaagtcatctcgggcaacgattgcaagtggacttctgcttatcggaagcattgtttgtctatcccgaggccgatctaaccttggggcccagcttgcaatggcattcttcttgaagaaggcgttcaaacaagataaaggatcgagctcgcagaggagcataagtagaactgatgtgactgaacccaggcacttggaatagtattggttaaccttggagacgttttaccttgaccttttcttcctctttcttgagaaaaagtgggaatatcgtttgcttgataaggcatatctgtacacagcatgacggattatgtaaataataggtttgtagttgtctgtgtttgccaatgagtacttctgtggagtactacatcgtctcactgtagaaatcgggtacctgagaatattaatgtatgaaagttaattttggagcaaaagagttctgattgaagaaggtgactgcaagatatgtttggatggaatgctgcaaggattgttatagacatttccaaaactgtacccctcatctcaaggtaaaccgtagcctcaggctgggtccgctgggatgcaatttactttccgatttaccgcatgataccgaccccagcggtaggcggtttttgtatttcgaacaagttcggtccaatttattaagttgggatttatactagacaactgacggctaacaaaaaaaattcagccgactgtcagctagtcagtccctattaagtttatgaaaaaaccttttg</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0468400, RefSeq:Os02g0468400