Os02g0473200

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Revision as of 02:29, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0473200| Description = Peptidase A1, pepsin family protein| Version = NM_001053372.1 GI:115446114 GeneID:4329350| Length = 5484 bp| Defini...")
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Gene Name

Os02g0473200

Description

Peptidase A1, pepsin family protein

Version

NM_001053372.1 GI:115446114 GeneID:4329350

Length

5484 bp

Definition

Oryza sativa Japonica Group Os02g0473200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:16893815..16899298

Sequence Coding Region

16894110..16894255,16894400..16894471,16894596..16894671,16895062..16895152,16895266..16895336
,16895422..16895584,16897919..16898143,16898284..16898531,16898629..16898758
,16898861..16899123

Expression

GEO Profiles:Os02g0473200

Genome Context

<gbrowseImage1> name=NC_008395:16893815..16899298 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:16893815..16899298 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcgcgtggtgcttgcgatcctcctggtcctggcgcctccctgcgccgcctcgtcctgctgctcgctctgtcggtgtcggcgctcgccgcggcggacgcatccggggtgttcgaagtgcagcgcaagttcacgcgccacggggacggcggggagggacacctctcggcgctccgggagcacgacggacgccgccacggccgcctcctcgccgccatcgacctccccctcggcggcagcggcctcgccaccgagaccgggctctacttcacgcggattgggatcggcacgccggcgaagcgctactacgtgcaggtggacaccggcagcgacatcctctgggtcaactgcgtctcctgcgacggctgcccgcgcaagagcaacctcgggattgagctgacgatgtacgacccgagggggtcgcagagcggggagctggtgacctgcgaccagcagttctgcgtcgccaactacggcggcgtgctgccgtcgtgcacctccacgtcgccgtgcgagtacagcatctcgtacggggacgggagctccacggccgggttcttcgtcaccgacttcctgcagtacaaccaggtctccggcgatggccagaccacgccggccaatgccagcgtctcattcgggtgtggtgctaagctgggtggggatttggggtcgtcaaacctggcactcgatgggattcttggatttggtcagtcgaactcgtcgatgctgtcacagctcgccgccgcgggaaaagttcggaagatgtttgcgcattgcttggacactgtaaatggtggggggattttcgctatcgggaacgtggtgcagccgaaagtgaagacaacaccgttggtgcccgacatgccacactataatgtcatcttgaaaggaattgatgttggtggtaccgcactaggacttccaacaaatattttcgattcaggtaacagtaaaggtaccatcattgatagtgggacaacattggcgtatgtcccagagggggtttataaggctctatttgccatggtatttgataagcatcaggatatatccgtacagactttacaagacttcagttgcttccaatattctggaagcgtcgatgatggatttcctgaagttacttttcattttgagggagacgtttcactgattgtttctccacatgattatcttttccaaaatgggaagaatttatactgcatggggttccaaaacggtggagtacaaaccaaggatgggaaagatatggtgcttttgggagatctagtgctttcaaataagctggttctttatgatttagaaaatcaagctatcgggtgggcagattacaactgctcctccagcattaagatcagtgatgacaagggatcaacatacactgttaatgcggacgatatctcctccggctgtgaagttcagtggcgcaagtccttgattttgttgctagcaacaacagtgatcagctatttaatgttgtaa</cdnaseq>

Protein Sequence

<aaseq>MAARGACDPPGPGASLRRLVLLLALSVSALAAADASGVFEVQRK FTRHGDGGEGHLSALREHDGRRHGRLLAAIDLPLGGSGLATETGLYFTRIGIGTPAKR YYVQVDTGSDILWVNCVSCDGCPRKSNLGIELTMYDPRGSQSGELVTCDQQFCVANYG GVLPSCTSTSPCEYSISYGDGSSTAGFFVTDFLQYNQVSGDGQTTPANASVSFGCGAK LGGDLGSSNLALDGILGFGQSNSSMLSQLAAAGKVRKMFAHCLDTVNGGGIFAIGNVV QPKVKTTPLVPDMPHYNVILKGIDVGGTALGLPTNIFDSGNSKGTIIDSGTTLAYVPE GVYKALFAMVFDKHQDISVQTLQDFSCFQYSGSVDDGFPEVTFHFEGDVSLIVSPHDY LFQNGKNLYCMGFQNGGVQTKDGKDMVLLGDLVLSNKLVLYDLENQAIGWADYNCSSS IKISDDKGSTYTVNADDISSGCEVQWRKSLILLLATTVISYLML</aaseq>

Gene Sequence

<dnaseqindica>5044..5189#4828..4899#4628..4703#4147..4237#3963..4033#3715..3877#1156..1380#768..1015#541..670#176..438#cctctcctcttcttttctcgcttcctccctttcccactcccctctccctccttttccggaagaaaggcgcggactcctctcctcctcctcctcctcgccgtcgccggcgaggcgacgagggcgggagctccagcctagcgaagcaaagctgcagctgcctcaggccgcgcgacctatggcggcgcgtggtgcttgcgatcctcctggtcctggcgcctccctgcgccgcctcgtcctgctgctcgctctgtcggtgtcggcgctcgccgcggcggacgcatccggggtgttcgaagtgcagcgcaagttcacgcgccacggggacggcggggagggacacctctcggcgctccgggagcacgacggacgccgccacggccgcctcctcgccgccatcgacctccccctcggcggcagcggcctcgccaccgagaccgggtaagttttaccgaagctttcccttagtcgtgctgggcgcgcccgcgcgcgcgtgcgtgcgttcgtctctgatctcggtggggagcacacgggggggcgcaggctctacttcacgcggattgggatcggcacgccggcgaagcgctactacgtgcaggtggacaccggcagcgacatcctctgggtcaactgcgtctcctgcgacggctgcccgcgcaagagcaacctcggggtgcgatactactgacctccgattcctccttcctcccctgcagattccccccctctcgtgcccagattggatgtttgatttggggggagttttgcagattgagctgacgatgtacgacccgagggggtcgcagagcggggagctggtgacctgcgaccagcagttctgcgtcgccaactacggcggcgtgctgccgtcgtgcacctccacgtcgccgtgcgagtacagcatctcgtacggggacgggagctccacggccgggttcttcgtcaccgacttcctgcagtacaaccaggtctccggcgatggccagaccacgccggccaatgccagcgtctcattcgggtgagccttttctcttctcaggcgaaaaaacgaaaagaaaaacaaaaaaaaaactagcatgtgtggatggaaatcggtgtgaaaaaccttctgaaagcgatgccaagatctgggggtctcccctctgtcgtgatttgcaggtgtggtgctaagctgggtggggatttggggtcgtcaaacctggcactcgatgggattcttggatttggtcagtcgaactcgtcgatgctgtcacagctcgccgccgcgggaaaagttcggaagatgtttgcgcattgcttggacactgtaaatggtggggggattttcgctatcgggaacgtggtgcagccgaaagtgaagacaacaccgttggtgcccgacatgtacgccattatactctgccaattatagttatgtgcttgttttttttttctcttttttttctctgcttctgtatgtcccttgtttactttgtttggatcgttcttcgttgcttgctaaatagagcctcttttttttttttaccaatgcgtttaatttgattcgttatatagtcttgcatatgagtatatgactgtctccctgctatgggtctatgaggcttaactggcataagaagtccgtagtttctggctgatgcttcactttacaccaggaaggtgatttcatcaacttttgtgaatgatatgggccaagagtgtgatcggtagttgctttcctacttacgatattctgttcaagatttggattttgccaaatgaattaggatatagtaatttaactagttgagtaaaaaaaagaagaaaaaactcagcatccagagcttttgactagtgtttcctattcccctagaggcctagacaatttgatagttcatccttagatggcaaacaaacatttattgagttgtttgaatttcaaacttagttatgacttttagcttatattgtttcattcaatttgaattttgaatcatagtatagtatttttctaccaaaataaaagataatgattttgtatcaaatcattacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgttaatgaatctagatagatatatatgtctatattcattaatatcaatatgaatgtgggaaatgctagaatgacttacattgtgaaatggagggagtacatgtattgaatttttgaaatgttgtatactgttttataaattgtgtctgctttatgaaagtattcaacaactgcaagtgtgcaaagttctcttctctctagcatgattgtcaaaatttcggtttgcttctccatgtcccacattcatgtttgtgtactgctgttctcatgtgattaataatcgtatcattctctgttaatatggcttaacttgctttttttaattttccgagatgtacagtacattaataaccaggctttactaactaaaataatgtgcttctgtagctgtttagttcttttagttgttttactggtctcttttgctgatgttttagtgggatatctggctgcaactttaactgaaatatcacatttctttgtaaaaaggactaacccagcagtgctaaatattgatcacatttatacctatggattccacacacagctaatcaacttcaaagtgctaaaaggtaaaaactcctcgaattagggtagggatattaatagatggttttcttagcactccttcattatctaaaattttgtacatatcaaaatattggtttggggacaagtttgtatctgccaatgattaagcatagtgattcaaatcttgcctgatccaatcaagcttgtctgcctattaatctctggattacacatcttcatggcagccaaatgagaagcttggtccttctcatgcatagtggcaatatgttgtgtctttactgatcagtcaccagctaccagttccactaaccactgcctatgcccgcaatgattccctactctctttcatcttgcatggataattgtgttgtaacactctcaactattccacgatcttgccactttccgcactctcaactatttcctaatctttcacctccatcatggattttgctgaaatggtgaaagcgctccatacacgagagggtggttcagctacctgctgctgtagatagaattgtgagatccagccatccaggatgcctgcaccaatacatatggcccatatgcatattcatttgataagaggatgaccacagcacttcagtagttcgttctttcggctcaatcctgctatatatgactgagcaatgtctaaacaatatattataccctttaaaatgaaagttttaacttttaacctccaatatcattgtgcttgcatataactgagttttttatgattaaaatactgaaatagaacttattgagtgaatggttattttctagtgctagactgtgcaaaagaataaaagaccgtggaatgatttagccattgacatgtcattacaaatcacttgtaataaggcatagtttaacaatagtgtaggagaaaccacagttcattagccgctgtatagtaagaggctagatgctatattttcatgcaacagattaactgatatgcccatgagaggtgtacatttcttattcctgacattcacttctaacttttttttgaggattcgtgacatttacattagtttgtattgctgagatcttataaacatgttactgtctaggccacactataatgtcatcttgaaaggaattgatgttggtggtaccgcactaggacttccaacaaatattttcgattcaggtaacagtaaaggtaccatcattgatagtgggacaacattggcgtatgtcccagagggggtttataaggctctatttgccatggtacgaaatcctttctgaatcaatcctcttagttgagagtgatttgtgcacatcattatacattttcatgattattgttttgtaggtatttgataagcatcaggatatatccgtacagactttacaagacttcagttgcttccaatattctggaaggtacgcatgataatggtcccttttacattgcctatcaaggtttacattaggtggttcaaattataatgcattggtaatatgatatgtttctaatttttgtgttcctattgcagcgtcgatgatggatttcctgaagttacttttcattttgagggagacgtttcactgattgtttctccacatgattatcttttccaaaatggggtatttaataatctctcttgcctattcttttttttttttaccatacaacttacaaacattatgttaggccgtgggcatgcatgttgaatttagtgcacagatgacagctccatcacagccacactactttatgctgtccattattcatttggagaaagatacacccttttatattttttttactatgcaaataccaaccattatttctactttatagatctaaaatttgaaacattggataactttaggttgttttctcatcaaaagaatatagttttttcttatgatctttctaccattattgtacgtggcagaacttcctatgatacattaatgcaagttgtgatagtaagtatttcatgtaaatatctagaaccctttgttgtgcagaagaatttatactgcatggggttccaaaacggtggagtacaaaccaaggatgggaaagatatggtgcttttgggaggtgcatattgctttgtgctgttcacctatttatgcccctacaagttttatttctgttctaatggttgccacttactttaagttgttctccttttttttttttttttttgcaaacttactttcagatctagtgctttcaaataagctggttctttatgatttagaaaatcaagctatcgggtgggcagattacaactgtaagtctttgctcattgaaaattaatcttttgcgctgggcacttaatgtgccatattgcaatttgaatttgttagtagataaatatactctctttaacatatgattgcacatttgatcatattgaccttcactgttgtctcaggctcctccagcattaagatcagtgatgacaagggatcaacatacactgttaatgcggacgatatctcctccggctgtgaagttcagtggcgcaagtccttgattttgttgctagcaacaacagtgatcagctatttaatgttgtaacctggctttggaatcttgggtgcacaatacgtctgttctgaaaatgatagaaactgatttttattcttacgataaaaggggggagaaaaagtagaagcttagacttgacactgtgagcacttgttttgataggggcacagagagaggaaatactacacacctagcacattgtacaaacagggttggactaacacgagctttgaaaagcatacatttagaagtaaattcaatgttgtttgtttctagaaattgtctaaactgttctgcttaataagcggcatcatagttttagtct</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0473200, RefSeq:Os02g0473200