Os02g0516600

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Revision as of 02:32, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0516600| Description = Zinc finger, RING-type domain containing protein| Version = NM_001053493.1 GI:115446356 GeneID:4329478| Length = 597...")
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Gene Name

Os02g0516600

Description

Zinc finger, RING-type domain containing protein

Version

NM_001053493.1 GI:115446356 GeneID:4329478

Length

5970 bp

Definition

Oryza sativa Japonica Group Os02g0516600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:19428158..19434127

Sequence Coding Region

19428508..19428665,19428774..19428935,19429140..19429272,19430718..19430822,19430896..19430998
,19431310..19431398,19431485..19432738,19432863..19432909,19433861..19434044

Expression

GEO Profiles:Os02g0516600

Genome Context

<gbrowseImage1> name=NC_008395:19428158..19434127 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:19428158..19434127 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtccatctccccttccgaatccaccagaggatcccagccgctcgcgccgcgcccttccaaccctagccccggaccccgccatggcaacagctccgccccaccgcgccgccgcggccgacgctcccctacggctcccgtctcaccgccctcagccgccggcgggagcggcggcccgagctccgtctcggtggttccagctatcagagaatatgttgatacttcccaaaaggtagttggattcagaatctctagagaagagaatgatgattcatatacccaagaagttggcaatttttctgaatgccactcttctgaacatgggaattcaggtttttcagccaataatggcacctcaggccaggcaactcctcagagacctgaattgatggaatccctgaagattgatctatccactacaaattctagtgggaatggtactcaggtgactgctagaaagaatcagtctgtaaatgccaattatctgctgaatttccactatgatccaatttctcggccacagcctagaggccccagaacatatcctacaagaagacagaggaagatcagaccatacaacaaagatttgttcctacaagcaaattttaagtttgttgtgttggatactggaagctatgaaatagaattaatggatccagataagatgctccagtgggaagatattgtatgtgtaagatattatagcccttgtgaggtgcaatgccctatttgcttggagagcccattgtgcccacagattacatcatgtggtcatatatattgctttccatgcattttacgttatttacttatgggaaaagaagattacaaaggtgaaagctggaagaagtgcccactgtgtttcatgatgatctcaacaaaggagttgtatacaatctatattactcaagtccagcattttcatgttggtgacaatgtgacatttacacttttgagccgctcaaaaaattcactcactccttctattaagaacctcactgatgaatctactatagacgaagatccttgcagtgcattctccaagttcattttgacgtctgatgtggaactttctgttagagaggcaaaaacagatcttgttaattggttgcatatggcagatttaggccttgtggatgacttggagaaacttccatacgtttctaccgctttggagcagctagaagaacggatgaaatattggagtgagtacagaaattttagtgtcagccctcccctaaaagacagcttctcacctgtaactagttccaaatcaaggaaccctaataatgcacaatcttcacgccagaacagtgaacacaagctatctcctctatcagatgaagatatgattgctggtgtttcggagctctgtatttcacctgaatcaaataaaatctttaataaaggaatgccatcgaaaacagaagagagatgtatggctcccatagattcaaatgagaatgatacttataatttttaccaggtatctgatggccaacacctaattcttcatccgctaaacatgaaatgccttataaaccattatggaagttctgatatgctcccaccaagaatacatggaaaaatcttggagctagaaactgtaacacaatccgaagctacaagaaagcgctatcgttatctaagtcacttctcattgacaacaacgttccagttctgtgaaattgacctgggtgatatgctgcctcctagctcattagctccattcatggatgaaatcaagaagcgagagaaacagaggaaacgaactgccaagaaggaagaaagcgatagagtgaaagccgaagttgctgctgctgcacaggcatctgcaatgctgtttgaacatacaagcttctctcccagtagtgggccacatggcgattttatgttctctctggatgactttgaagctcttggaaacaatgctggaccctccacgagtccaccagccagcgaaagaaagcttttctccgatgttgcacggcttggctttgcgtctgcccaagactcgcctcctctaagagttgaatctggggatttgactggcaaaagtgaaagcacgggggaacaagggccagccgcaacacccgcattatcctttgccagcatcatttcctccactagagcgtcagacaatagcctggacacgcacaaaccaaatgtagtcgggaagaaaggcaagaaacccaccaaagtgctcttgtccactggcggtggccgccgatactga</cdnaseq>

Protein Sequence

<aaseq>MSISPSESTRGSQPLAPRPSNPSPGPRHGNSSAPPRRRGRRSPT APVSPPSAAGGSGGPSSVSVVPAIREYVDTSQKVVGFRISREENDDSYTQEVGNFSEC HSSEHGNSGFSANNGTSGQATPQRPELMESLKIDLSTTNSSGNGTQVTARKNQSVNAN YLLNFHYDPISRPQPRGPRTYPTRRQRKIRPYNKDLFLQANFKFVVLDTGSYEIELMD PDKMLQWEDIVCVRYYSPCEVQCPICLESPLCPQITSCGHIYCFPCILRYLLMGKEDY KGESWKKCPLCFMMISTKELYTIYITQVQHFHVGDNVTFTLLSRSKNSLTPSIKNLTD ESTIDEDPCSAFSKFILTSDVELSVREAKTDLVNWLHMADLGLVDDLEKLPYVSTALE QLEERMKYWSEYRNFSVSPPLKDSFSPVTSSKSRNPNNAQSSRQNSEHKLSPLSDEDM IAGVSELCISPESNKIFNKGMPSKTEERCMAPIDSNENDTYNFYQVSDGQHLILHPLN MKCLINHYGSSDMLPPRIHGKILELETVTQSEATRKRYRYLSHFSLTTTFQFCEIDLG DMLPPSSLAPFMDEIKKREKQRKRTAKKEESDRVKAEVAAAAQASAMLFEHTSFSPSS GPHGDFMFSLDDFEALGNNAGPSTSPPASERKLFSDVARLGFASAQDSPPLRVESGDL TGKSESTGEQGPAATPALSFASIISSTRASDNSLDTHKPNVVGKKGKKPTKVLLSTGG GRRY</aaseq>

Gene Sequence

<dnaseqindica>5463..5620#5193..5354#4856..4988#3306..3410#3130..3232#2730..2818#1390..2643#1219..1265#84..267#gccgccgccaccgccgcccgccacctcgccgccgaccagacgagccgccgtttgacccaacaccgagctcccgcgcggagttgatgtccatctccccttccgaatccaccagaggatcccagccgctcgcgccgcgcccttccaaccctagccccggaccccgccatggcaacagctccgccccaccgcgccgccgcggccgacgctcccctacggctcccgtctcaccgccctcagccgccggcgggagcggcggcccgagctccggtgagttctcgcttcccgcgagctccctccctcttcccccttccacggctaaacgtcgattgaaacgataggggattatcggcggggcttgcagatctactgatctagatagctggactgggttggttggggggacgaggattgtgggaagctttttacctgttaattttgcaggttgtagagttgagcccaagctttgtgtagaaactctaatacctttttggtaaattgagtgttggtctgtgatttctaggttaattcgtgtttcgtgggttacagatttctgtatccgtgcttaggtgagctttggcttggttaattgtaatccaattggaccaattctcgtgtggattcatgtggatcaatgtttttaagcttataattggtcagttactatcgagtgctgccgatgcggattaatggttacgtctcatggaatttagattcattactttgctgtagagcatgcatttctttgtaaagacattttggtctcaggtaggcactaccatattggacaattgatgccttacaacttacttagctatccttcaaaagtggggaaggctcaattaaagcgagcgggggattatgttttttcaggagttagtgattccatatgaacgttatgctatctagtataaatagtggaaataacaatggggtcatgaagatagtgaccccatttgacatagcatgttgcagtctcaaccaagttctgttcccttagaagccattttgtgttcttcattagttcaattgattctcaaattcactgttgagtgttgacaatgtctgctatgagcatgctcattgattacatcattttgctaataaaaatatccattgattggtatttttttttcataaatattattgaagtgttgccttactagtttccaatatacccatttggaaagtaatttttacaacgcaactcatactttgcagtctcggtggttccagctatcagagaatatgttgatacttcccaaaaggtaaaatgtttacataacgtaattcaaatcagatttcagtttttcgataaacatttgtgtatgttgctcttgattttttatgaaacttacattcaattttcttatgaatctggaatatgtccaggtagttggattcagaatctctagagaagagaatgatgattcatatacccaagaagttggcaatttttctgaatgccactcttctgaacatgggaattcaggtttttcagccaataatggcacctcaggccaggcaactcctcagagacctgaattgatggaatccctgaagattgatctatccactacaaattctagtgggaatggtactcaggtgactgctagaaagaatcagtctgtaaatgccaattatctgctgaatttccactatgatccaatttctcggccacagcctagaggccccagaacatatcctacaagaagacagaggaagatcagaccatacaacaaagatttgttcctacaagcaaattttaagtttgttgtgttggatactggaagctatgaaatagaattaatggatccagataagatgctccagtgggaagatattgtatgtgtaagatattatagcccttgtgaggtgcaatgccctatttgcttggagagcccattgtgcccacagattacatcatgtggtcatatatattgctttccatgcattttacgttatttacttatgggaaaagaagattacaaaggtgaaagctggaagaagtgcccactgtgtttcatgatgatctcaacaaaggagttgtatacaatctatattactcaagtccagcattttcatgttggtgacaatgtgacatttacacttttgagccgctcaaaaaattcactcactccttctattaagaacctcactgatgaatctactatagacgaagatccttgcagtgcattctccaagttcattttgacgtctgatgtggaactttctgttagagaggcaaaaacagatcttgttaattggttgcatatggcagatttaggccttgtggatgacttggagaaacttccatacgtttctaccgctttggagcagctagaagaacggatgaaatattggagtgagtacagaaattttagtgtcagccctcccctaaaagacagcttctcacctgtaactagttccaaatcaaggaaccctaataatgcacaatcttcacgccagaacagtgaacacaagctatctcctctatcagatgaagatatgattgctggtgtttcggagctctgtatttcacctgaatcaaataaaatctttaataaaggaatgccatcgaaaacagaagagagatgtatggctcccatagattcaaatgagaatgatacttataatttttaccaggtctgaagtatgtctggctgtgattgtttaccttgtgcacatggtttttcattctcagagttttgatatgtcaaatcttgttgcaggtatctgatggccaacacctaattcttcatccgctaaacatgaaatgccttataaaccattatggaagttctgatatgctcccaccaaggtatagtgtttgtttacaccttaaaagtcatcgctctcatattgacacattattttgtgtattgtattagtattgggtagattgcatcctgattatgattatggaaaattggatttttcactatgtaagcagagataatttgtttagtttgatctgataaccaattttactcaatttgctcgagcaatgtatttcttgtgtgcatgagatactacattctggttggagtgcttatctcttctcctttttttttgtatctggttgttgctcgtggtgtttgcttgatacttatccagcttacttgcacgcagaatacatggaaaaatcttggagctagaaactgtaacacaatccgaagctacaagaaagcgctatcgttatctaagtcacttctcattgacaacaacgttccaggtaaaccagttgtggataactaacttttacttacaagcttgttcttacgctctgtcatctatgaactacgcagttctgtgaaattgacctgggtgatatgctgcctcctagctcattagctccattcatggatgaaatcaagaagcgagagaaacagaggaaacgaactgccaagaaggttagaactgctttgtattgtttattcagcatttcgccatcagtagtcatatcatgactagtcgacttttgaaaatttgttagtcagaactgttgtgtgttgtttgttcaaaatttctttagtttgtattttgcaagtggacactattctcagatttgccagcagttaatccctgtggatttaataatgctgtcaaatagttttttatagaggcgcttttcaaggagtcacctagtaacattagatgttcttaatttgttgtatgggtccatcgtttcttatgatatacgcagtgccttcaagtgtggtgtagacgtgtagttactcttgggttatgtagaacagggtgtgtttgtttaccagaaatgacacaccaagtacatgactggagatgctatgaaacatattattaactttgatagaactgggaagtgcaatcttgccagttacagtaatcattgtctatctcacatggtttaaaagcatttctttcaagacatattatacatgtatatgtctaccagtgtaccacacaatatggaaacatggagaaaataggacattgtactataacatatctgataccttggttcaattttcattttggactcttgtaccatttaaaagatgtccacaaagtttcattactgttcaaaagacatccctggccgaaacaacccgatttttcatgagcagactgtttttctaattattattaaagttggtcaatgtggacactgactgtgggatggagagtgatgggtggcttaacagtatatggagttgagccaaattccatgaaagtaaattttattgaaaccactgtttgcaattgaaaactctgttgttttggcctgagagattcctttgaatggttttgcaagttaaggggtatgttttaaaaagtactacctccatcccagaatataagcatttttagagttggacacggttattaaggaagtaggtaaaagtgaatgatggagggctgtgattggttgagtagtggaggtaggtgggaaaagtgaatggtggagggttgtgattggttggaaaaagaatgttggtgaagaagttgttatattttgggacaaatgttgagggctaaaagttgttatattttgggacggagggagtatgaattaggatggaaattaaactgtgacaggaggtcagatacatagaatggattttctcaagcagacataacttataactaggttgctaagagcagactttgccttttggaaaaaaaactgaatattttgagttgctggtcaatttctttaaaattgggtgttttggctgccaaaatatattcaagaatatacctgagtgagatgttttttgtgttcagctctgtttgcataccagttcaaactgactcttatagttgtaaggtttattttggtcatttactttttctccttggtgctttcctttaggaagaaagcgatagagtgaaagccgaagttgctgctgctgcacaggcatctgcaatgctgtttgaacatacaagcttctctcccagtagtgggccacatggcgattttatgttctctctggatgactttgaaggtaaataaactcatttatgaacagacctgattttgcatattcagactttctattggggcaaaacacatacttgttagtgctcctaatccacattctgaagcattcacatgtttgcaattgtgcttttagttctctgcatgtttcatcctgtatggttggttgccctgcctcacttcatatgtgtgtatatattttccatttaagctcttggaaacaatgctggaccctccacgagtccaccagccagcgaaagaaagcttttctccgatgttgcacggcttggctttgcgtctgcccaagactcgcctcctctaagagttgaatctggggatttgactggcaaaagtgaaagcacgggggaacaaggtatggtgacacacgatgcacctttggacgctggcacttaccagtgtgcggcagtgcccatttttcttctagtgaaatcctggcataactaaactgttttctatgcagggccagccgcaacacccgcattatcctttgccagcatcatttcctccactagagcgtcagacaatagcctggacacgcacaaaccaaatgtagtcgggaagaaaggcaagaaacccaccaaagtgctcttgtccactggcggtggccgccgatactgaaggaagagtgacactggaatggaagcagttgccagttggctgtttcctataagcagtgtgtatagtgcataacctggacttcacatctgtaacactcccaagtcccaagtagcagctttttctcccatgtggtttgatctaaatcgcctgactgttttagaaggtttttactgtgtatctacatcctgacccatgctaagggagtaagggtgactgccctgtcgcaaaatgagaagagctatgtaaaatttgataaataatgatgctaaggatcatgcgcaatactttgctcaatgtacgtcgacgagttgatccgtcataggctgatacagcctgctgtttaaatcgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0516600, RefSeq:Os02g0516600