Os02g0518600

From RiceWiki
Revision as of 02:32, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0518600| Description = Similar to Potassium transporter 1 (OsHAK1). Splice isoform 2| Version = NM_001053501.1 GI:115446372 GeneID:4329486| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os02g0518600

Description

Similar to Potassium transporter 1 (OsHAK1). Splice isoform 2

Version

NM_001053501.1 GI:115446372 GeneID:4329486

Length

6291 bp

Definition

Oryza sativa Japonica Group Os02g0518600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:19703413..19709703

Sequence Coding Region

19703555..19704717,19704825..19704939,19705023..19705075,19705171..19705431,19705568..19705618
,19705723..19705971,19706102..19706324,19706426..19706539

Expression

GEO Profiles:Os02g0518600

Genome Context

<gbrowseImage1> name=NC_008395:19703413..19709703 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:19703413..19709703 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtctgtccaggaggatggcgcagccaggccggagccggacgttctccggcgccatgactcgctctacggcgacgccgagaaggtctccaacaacaagcgccatggcgccgggggaagctgggcgcggacgctgcagctggcgttccagagcatcggcgtggtgtacggcgacgtcgggacgtcgccgctgtacgtctactccagcacgtttccgaacggcatcaagcacccggacgacctcgtcggcgtcctctccctcatcctctacaccctcatcctcatccccatggtcaagtacgtcttcatcgtcctctacgccaacgacaatggcgacggtggaacattcgctctgtactcgctgatatcgcggcacgcgaagatcagaatgatcccgaacgaccagacggaggacgccaacgtgtcgaattacagcatcgaggcgccaagctcgcagctgaggagggctgagtgggtgaagcagaagctggagtccagcaacgcagccaagatagcactgttcaccatcacaatccttggcacctccatggtcatgggtgatgggacactgacaccagcaatctctgtgctgtctgcggtgagtgggatcagggagaaagcaccaaacctgacacaatcgcaagtggtgtggatctcggtggccatcctgttcgtgctgttctcgatgcagcggttcgggaccgacaaggtcgggtacaccttcgctccggtcatctcagtgtggttcctcctgatcgcgggcatcgggatgtacaacctcaccgtgcacgagatcaccatcctccgggccttcaaccccaaatacattgtcgactacttcaggagaaacggcaaggaggcctgggtctcccttgggggcgttgtcctctgcatcacaggcacggaggccatgtttgctgacctcggccatttcaacatcagggcaattcagctcagcttcacttgcgtcctcttcccctcggtcgcgctgtgctacatgggccaggcagcctacctgcgcaaattcccggagaatgtcggcgacaccttctacagatccatcccagcgccgctgttctggccggtgttcgtggtggcgatcatgggggcgatcatcgcgagccaggcgatgctgtcgggggcgttcgccatcctgtccaaggcgctgtcgctgggttgcttcccgcgggttgaggtggtgcacacgtcgaacaagtacgaggggcaggtgtacatcccggaggtgaacttcctcatcggcgccgccagcgtcgccgtcacgctggcgttccagaccacggcgaacatcggcaacgcctacggcatctgcgtcgtcacggtgttctccatcaccacccacctcatgacggtggtgatgctgctcatctggaaggtgaggctaccgttcatcgccgcgttctacgccgccttcggcctcgccgagttcctctacctctcgtcgatcctctccaagttcgccgagggcgggtacctccccttctgcttctcgctggtgctcatggcgctcatggcgacgtggcactacgtccacgtgaagcggtactggtacgagctggaccgcgtcgtgccggcggccgagacgacggcgctgctggcgcggcgcgacgtgcggcgcgtccccggcgtcggcctgctctactccgagctcgtgcaggggatcccgccggtgttcccgcggctcgtggacaagatcccctccgtgcacgccgtgttcgtgttcatgtccatcaagcacctccccgtcccgcgggtggcgcccgcggagcggttcatcttccgccgcgtcgtcggcgccgacgccggcgccggccaccgcctgttccgctgcgtggcgcgctacggctacaccgaccagctcgagggcgccaaggagttcgccgcgttcctcctcgaccgcctcaaggtgttcgtccacgaggagtccgtcttcgcctgcagccgcggcgacaacgacgacgacgacgcgatgcggcgggcgcaggcgatggcggaggaggagaagcgggtgatcgacgcggaggcggagcgcggggtggtgtacctgatgggggaggcgaacgtgacggcggcggcggggtcgtcggtgatgaagcggatcgtcgtcaactacgtctacacattactgaggaaaaacctcagggaagggcacaaggcgctgtccgttcccaaggaccagctgctcaaagttgggatcacctatgagatttag</cdnaseq>

Protein Sequence

<aaseq>MSVQEDGAARPEPDVLRRHDSLYGDAEKVSNNKRHGAGGSWART LQLAFQSIGVVYGDVGTSPLYVYSSTFPNGIKHPDDLVGVLSLILYTLILIPMVKYVF IVLYANDNGDGGTFALYSLISRHAKIRMIPNDQTEDANVSNYSIEAPSSQLRRAEWVK QKLESSNAAKIALFTITILGTSMVMGDGTLTPAISVLSAVSGIREKAPNLTQSQVVWI SVAILFVLFSMQRFGTDKVGYTFAPVISVWFLLIAGIGMYNLTVHEITILRAFNPKYI VDYFRRNGKEAWVSLGGVVLCITGTEAMFADLGHFNIRAIQLSFTCVLFPSVALCYMG QAAYLRKFPENVGDTFYRSIPAPLFWPVFVVAIMGAIIASQAMLSGAFAILSKALSLG CFPRVEVVHTSNKYEGQVYIPEVNFLIGAASVAVTLAFQTTANIGNAYGICVVTVFSI TTHLMTVVMLLIWKVRLPFIAAFYAAFGLAEFLYLSSILSKFAEGGYLPFCFSLVLMA LMATWHYVHVKRYWYELDRVVPAAETTALLARRDVRRVPGVGLLYSELVQGIPPVFPR LVDKIPSVHAVFVFMSIKHLPVPRVAPAERFIFRRVVGADAGAGHRLFRCVARYGYTD QLEGAKEFAAFLLDRLKVFVHEESVFACSRGDNDDDDAMRRAQAMAEEEKRVIDAEAE RGVVYLMGEANVTAAAGSSVMKRIVVNYVYTLLRKNLREGHKALSVPKDQLLKVGITY EI</aaseq>

Gene Sequence

<dnaseqindica>4987..6149#4765..4879#4629..4681#4273..4533#4086..4136#3733..3981#3380..3602#3165..3278#atctatcttcttcctcctcttagctatatatatctacaggaccgaccggcggcggcggaggaaggtggccggccggcggcgtgtcggccggcgtctctgccgttgtcgtgtgctttcaattcgtttcttctgaatcatcgaataggtgcgtatctttaaccggtctcgctgttttttaataatagaaatggctattatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctttgatttctgttgtaaaatatatagtatgtcaattagttacttttctgttgggtttcattcgtttcattatgttggctgcactcttgatttggcttacgcttttaaccgattcgtgatttggttaattaattatagccagtgattaaacaagagggatttgagagcttgggagtttgggttagatggtgcagcgcagcacacatggcagctagctgggctgggcatgcatttggtctcatgcgtgcaccttaattaatttgtcaggactcttgattgagatatggccgaggtttgtatagacctcagtcagtcggtcggtcactactcactagctttagtagccacccagtcaagaatcctagtttgtcgccgtctgatcagctctcggacggctcagatcgggacacgcggacgaacatgacggcggcaaaggacttgcgcaatcccaatggaatccacaatccattagaataattaatttggttatatggcagaaaattggagaaagattttatccggatttcgtccaccattggatccaatgttaagagttgtgcccaacctcccatagctccgctaggattctagcttggcagacgacctaatccaactaaagggtctggagagaaggaaacccttgtttcttcagtcttacagaaatggtcgtgagtgacgattaaactgatggtgggcagggtgaggtgacggcaacactgctagaacggaggaggcatacactagctgactttggaaggagggggaggaggacggttcgcaaggcccaggggcggatctacagtaatagggccggtgtcaggcgacaccgacaactttcggcaaaacctatagcaaaactgtttatccatatgtcataacaccatgatctaagtataattagcattttatgacaccgatagacacgttatgacactaacgaatcgattttctggatccgtcactggcaaggcctagctgccagtgtagtttgtgacttggtgtctagcttccaacactagtaaggccgagtgacggtgtccaggcaatggctagaaggatacacaagctcgcctcacatatgagagaaaggaagggcgagaaaaagttaaggttactacaatctcacaaattttagcatgatatgaacagttcaaaagtgactgaagcgatagagatttgttacaaatattacataggtatattagaaagaaaatttgtctttagcagtcaaactaactaagcataatcatcatgaccagttggagcatgagaggagagtttcaggctgccctattattttcacccgattcactacattattatcacggattatttctccatacctccaaagataagtatttcccgtagaactttattctattgtattatttaatccatattttctaagcttgtttagtttattcttagaactaattaatttatttctgaaattaaatagataatagtcatttttatcaatgaataatttatattgtagttatagtatgatcatagtgaaattatattacaatatactattatagtattgttacattcgaaagtttttttaattattttttgtaagagagtcccttattttaataaaaagagttggtttagccccaaataaattgggatccgatttgtttgtgtttttatttctaaattattttagtgcaaatttcatggcagcctggcctgaaatactaggcccaacaccccttgctgggccaaagcgtaggcaataatttccagcccaaaagaagctgagctcagagcccggcccgacaaatggtcatccctggtggctcaagacacgtcattccgtttccccttaaatagaaagaaaggaagaaagaaagaaaagaaagaaataacggaatgggacgccatggcacacaagctaaaaatggcccgatgcaggaagaattctccggtttcctgacaagacgcgacatcatagaaaccgcaacaaactgctgcagttgaagagactagagagggtttcctctcttcaacaatggagacaaccagaggaggcaggtagccgatgacgtctcctccagaattaggccctagagtttggtttctccaggaggacaaagagtagttgagacaaatggcgtctggtttggcgaatggagtggcgttctgcgtgtttataaggtgggaaagatgcaagataagggatttactattctggaagatgaggggattttagctttgtttttgcagcctctccttcggatcccgggtacctcctcctttttagttctctgatctgctgatctttcaccattttatttctcatcatcttgacatcttcttcttctgaaacatttttctggaagaacatttctcaaaacactctagttgtaataataattgttattactgaaatatcattctccagatactttcttcgttgggagaattgtgcatgttgctgtttactctgaaatatattcagtcaaattaagccacatttgttttcctcaaagaactcaaccctgtcacattttcacgtgccaattcccttcgatccaacaattagtggtttcttctgacaaaaacaccgacaaggaagatctccaacattattgatagtgttctcaaaatctctgtcgaacaacacgacatgtttcagtgacgaggacttacgatagaagaaccatacggatttggatccgcgtatatcgtcgcgtatatagatatcaaattccatctctttagttaccatttcttggttgtctattaggatctcatcagaattaattagtagtgtctaaaagtctagtatcctgaattcctgatgatgcagggcacaggggttctgaagcctaaacccttcaacatcgatcttcacaagctgatcagttgaaggagatgtctgtccaggaggatggcgcagccaggccggagccggacgttctccggcgccatgactcgctctacggcgacgccgagaaggtctccaacaacaagcgccatggcgccggggtcaggaccaactcatctctctcgtagccagtgacagacactgacactgacgccgagttcgtttgttcatggtgtttgttgtgttttggtggtggcggcagggaagctgggcgcggacgctgcagctggcgttccagagcatcggcgtggtgtacggcgacgtcgggacgtcgccgctgtacgtctactccagcacgtttccgaacggcatcaagcacccggacgacctcgtcggcgtcctctccctcatcctctacaccctcatcctcatccccatggtcaagtacgtcttcatcgtcctctacgccaacgacaatggcgacggtgagctctccgaccgactgacatccatccatcctgccaaattcagagagatgcagcagcccatcaccattctcaatctcttgtgatcattattgcattgggtgaattgcatgacatgaacttactgcaggtggaacattcgctctgtactcgctgatatcgcggcacgcgaagatcagaatgatcccgaacgaccagacggaggacgccaacgtgtcgaattacagcatcgaggcgccaagctcgcagctgaggagggctgagtgggtgaagcagaagctggagtccagcaacgcagccaagatagcactgttcaccatcacaatccttggcacctccatggtcatgggtgatgggacactgacaccagcaatctctggtatcaatagatcagtttttttgcattcgatttatgtgtgcaaatgtagatagattcggagaatggtactaatttgttgccaatggatgatgtcctctttgcagtgctgtctgcggtgagtgggatcagggagaaagcaccaaacctgacacaatgtgagcacaccaaaacactggagtacttagtttgatagtttcaggtttaacgtgtaatactagtacatgtcaagcctgttcagactccagagtggtatctgaaaagaaatattttgtcttgtcgtttttgttacagcgcaagtggtgtggatctcggtggccatcctgttcgtgctgttctcgatgcagcggttcgggaccgacaaggtcgggtacaccttcgctccggtcatctcagtgtggttcctcctgatcgcgggcatcgggatgtacaacctcaccgtgcacgagatcaccatcctccgggccttcaaccccaaatacattgtcgactacttcaggagaaacggcaaggaggcctgggtctcccttgggggcgttgtcctctgcatcacaggtgagctcggtattaccgaacactgcacaattgcaaaggagaaaagtactgagcaagaaggggaactgattcttcgcatttgcgaaatgtcgcaggcacggaggccatgtttgctgacctcggccatttcaacatcagggcaattcaggtagtccataattccatttctccacattgtcatcagttgtcacaattgaaacaactgactgcattgttcattctgtcctgcagctcagcttcacttgcgtcctcttcccctcggtcgcgctgtgctacatgggccaggcagcctacctgcgcaaattcccggagaatgtcggcgacaccttctacagatccatcccaggtacagttgttcagccagaatgggtttggaggagtaggcaaactaggcatcatttgatcgtcagaaatgtgtgaattgatgggtggtctgtattatgcaatgtgcagcgccgctgttctggccggtgttcgtggtggcgatcatgggggcgatcatcgcgagccaggcgatgctgtcgggggcgttcgccatcctgtccaaggcgctgtcgctgggttgcttcccgcgggttgaggtggtgcacacgtcgaacaagtacgaggggcaggtgtacatcccggaggtgaacttcctcatcggcgccgccagcgtcgccgtcacgctggcgttccagaccacggcgaacatcggcaacgcctacggcatctgcgtcgtcacggtgttctccatcaccacccacctcatgacggtggtgatgctgctcatctggaaggtgaggctaccgttcatcgccgcgttctacgccgccttcggcctcgccgagttcctctacctctcgtcgatcctctccaagttcgccgagggcgggtacctccccttctgcttctcgctggtgctcatggcgctcatggcgacgtggcactacgtccacgtgaagcggtactggtacgagctggaccgcgtcgtgccggcggccgagacgacggcgctgctggcgcggcgcgacgtgcggcgcgtccccggcgtcggcctgctctactccgagctcgtgcaggggatcccgccggtgttcccgcggctcgtggacaagatcccctccgtgcacgccgtgttcgtgttcatgtccatcaagcacctccccgtcccgcgggtggcgcccgcggagcggttcatcttccgccgcgtcgtcggcgccgacgccggcgccggccaccgcctgttccgctgcgtggcgcgctacggctacaccgaccagctcgagggcgccaaggagttcgccgcgttcctcctcgaccgcctcaaggtgttcgtccacgaggagtccgtcttcgcctgcagccgcggcgacaacgacgacgacgacgcgatgcggcgggcgcaggcgatggcggaggaggagaagcgggtgatcgacgcggaggcggagcgcggggtggtgtacctgatgggggaggcgaacgtgacggcggcggcggggtcgtcggtgatgaagcggatcgtcgtcaactacgtctacacattactgaggaaaaacctcagggaagggcacaaggcgctgtccgttcccaaggaccagctgctcaaagttgggatcacctatgagatttagagtttgtcttttcttttctttttttttcttctcacttgtcttatttttagggcttgttataattttctagtacactttgttgatataatgatgtataaaatctagtactactactttagcaaatgaagcactattagtagtt</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0518600, RefSeq:Os02g0518600