Os02g0523300

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Revision as of 02:32, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0523300| Description = Spc97/Spc98 family protein| Version = NM_001053519.1 GI:115446408 GeneID:4329507| Length = 6369 bp| Definition = Or...")
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Gene Name

Os02g0523300

Description

Spc97/Spc98 family protein

Version

NM_001053519.1 GI:115446408 GeneID:4329507

Length

6369 bp

Definition

Oryza sativa Japonica Group Os02g0523300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:19948888..19955256

Sequence Coding Region

19949148..19949279,19949380..19949553,19949657..19949788,19949859..19949957,19950148..19950219
,19950299..19950355,19950425..19950598,19950679..19950773,19950946..19951045
,19951140..19951292,19951364..19952494,19953089..19953199,19953297..19953459
,19953832..19953926,19954012..19954272,19954397..19954537

Expression

GEO Profiles:Os02g0523300

Genome Context

<gbrowseImage1> name=NC_008395:19948888..19955256 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:19948888..19955256 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggttcttccccagctaaacgcaggattgatggaggccgatggctctgcgagcttcatacgcaagctgcagctcagcgtttctgatggccttcctcatgcggcgcctgttccagaactgagtacacaagagcatgaattggttaaaagtgtcttcgaagtgctccaaggctttgacacggtcttgctctactgggacaagactgcgccgggatactgtgagaaagcagggatctatgtttcgcacctgtcacagacgagcctcagagctgtgctcaagccttttctgtttgctgcaacatgcttgaagcaggtggagctctttgttgggagggtaagatcgtgcggtcatggaactccgacgctgagtgcatttgctagttcggtcgattcttggctaatgaggctccgcaaagcagctctgaaggaggaagagcagttgtttctttcagttgaaaggactataactctgctgggattgactgattctatgtcaagtttatgttctggagcagaacatttgtatcaagttgtgcaaggagctgtgcctgatgccttttggaattctggcgcacagatggcatctagtgaagtggcggttcatgctgtaaaccatctttttaagaagttaaatgaagtctgtcttgtggaagatggcgagggtgaaccttatcatatgctgcttgtgatattcgctggaaccttgttaccatatcttcagtgtcttgattcctggctctatgatggtattcttgatgaccctaatgaagagatgttcttttacgcgaacaaagcagttacaatagatcaaccggcattctgggaaatgagttatatgctgagagtacgaggaccacgaaccgatagctcatcaacattagctgacaatgaatctatcaggaaaaaggaattaatcaaccaggaaacaactgctgcagcagctctcttgaaatctagcaatcaaggttgcgcggatatattatgcccagtgttcttgaaagatattgcaagagccattttatctgctgggaaatcatttcagcttgttcagcatgttcaagagacacatcggattcaaactcgtgaagtcatacatgagtttaatattgatcagcatggcaattacattagtcaacagaagtttcggcctgatacctcaagtataagaattcaagataagcgtgaagatattattgaagaatctacaggccagtttggaaataatgcttgcaaaatggatttcttaactttgtctgagagtttcttgatatgcctatctggtctgttggaaaatggtgaccatgttgatgattacttaagaaagttgtgtgctgataatgctccagttaacaaaacaattgtgcacagtaagagtaatgtacaagaaacagaagaggtatgtggagaaaacagctctgagaagacttggttaaagctcctaagagatgctacatcaggaagggactatgatggcatggagaaaactttagcaaaaaatgctgttatgagggatccaacatttgtccctggagatcatcaagatgtatcttccactgaagtagaaagctatttcaacctatcttgctatgaaaacccaggcatcactgcttgtcaagaaatgctagagaggaacaaaaactcctggagcgacttaaatatctctaaaagtttccatcttcctccactgaatgatgagaacatacggaagtctatatttggtgatagagactcttcagggaccatccctggtgataccctatctacaacatatttccccagactagacggaactgattacaagtttggttttcagtttgatgattcagaatatatccgccaagaggatgacaggagaaccttggaggctctctatacattcccgactcttctgccatgtgtaaatgaaaatgtcccgctgtcagagatcttacctttgcagaaagatagcacacttgcctcaagagctttgaagtttattcagagcatgagtttgagagatcctcttcaaccagttggtatcatccaagaatgcctttctaaatgtataaagagacaggttgatcacattggcaagcaaatcttgtcaaagctaatgggtgactggagattaatggacgaactctttgttttacgtgctatttatttgctagggtcaggtgacatgctgcagcagtttctggtaacaatttttgacaagctcgacaaaggaaatccctgggatgatgattttgagttgaatactttgctacaggaatccataagaaactcagctgacaaaatgctgctgactgcgccagattctttggtcgtctcgttagcaaagcatgatacgcgcaacgatgaagaaactacatcaatttctaggaaaggtcgcgcacaaggttttggcatcgaggcacttgatgtgcttaattttacatataaggtgtcttggcctcttgatctgattgtcaatacggaggcactgaagaagtataaccaggtcatggcattcttactaaaggtcaagcgtgcaaagtttattttggacgaaactcgaaagtggatgtggaagggcggaggcagcactatgcataattttaagcaacatttaatagttgagcagaagctccttcattttgttgatgcatttcatcaatatgtcatggatcgggtataccatagtgcgtggactgagctttgtgatggcatggcatccgccactacactggatgaagtcatggaagttcatgaagcatacctctcttctattcagcgacaatgctttgtggcctctgataagttgtgggccctcatagccagtcgagttaagaccattcttggattggcacttgacttccacaacatagaacagactcttggtactggtggaactgctccagccgtcaaggcaagatgcgagatggaagtggatcgcatcgagaagcaatttgacgagtgcgttgtatttctcctgcggatcctatctttcaagctcaatgttggtcacttcccccatctggcggatctcgttacgagaatcaattacaaccactattacatgtctgacagcggaagcttctctgccatccctggatctcggccacggtag</cdnaseq>

Protein Sequence

<aaseq>MVLPQLNAGLMEADGSASFIRKLQLSVSDGLPHAAPVPELSTQE HELVKSVFEVLQGFDTVLLYWDKTAPGYCEKAGIYVSHLSQTSLRAVLKPFLFAATCL KQVELFVGRVRSCGHGTPTLSAFASSVDSWLMRLRKAALKEEEQLFLSVERTITLLGL TDSMSSLCSGAEHLYQVVQGAVPDAFWNSGAQMASSEVAVHAVNHLFKKLNEVCLVED GEGEPYHMLLVIFAGTLLPYLQCLDSWLYDGILDDPNEEMFFYANKAVTIDQPAFWEM SYMLRVRGPRTDSSSTLADNESIRKKELINQETTAAAALLKSSNQGCADILCPVFLKD IARAILSAGKSFQLVQHVQETHRIQTREVIHEFNIDQHGNYISQQKFRPDTSSIRIQD KREDIIEESTGQFGNNACKMDFLTLSESFLICLSGLLENGDHVDDYLRKLCADNAPVN KTIVHSKSNVQETEEVCGENSSEKTWLKLLRDATSGRDYDGMEKTLAKNAVMRDPTFV PGDHQDVSSTEVESYFNLSCYENPGITACQEMLERNKNSWSDLNISKSFHLPPLNDEN IRKSIFGDRDSSGTIPGDTLSTTYFPRLDGTDYKFGFQFDDSEYIRQEDDRRTLEALY TFPTLLPCVNENVPLSEILPLQKDSTLASRALKFIQSMSLRDPLQPVGIIQECLSKCI KRQVDHIGKQILSKLMGDWRLMDELFVLRAIYLLGSGDMLQQFLVTIFDKLDKGNPWD DDFELNTLLQESIRNSADKMLLTAPDSLVVSLAKHDTRNDEETTSISRKGRAQGFGIE ALDVLNFTYKVSWPLDLIVNTEALKKYNQVMAFLLKVKRAKFILDETRKWMWKGGGST MHNFKQHLIVEQKLLHFVDAFHQYVMDRVYHSAWTELCDGMASATTLDEVMEVHEAYL SSIQRQCFVASDKLWALIASRVKTILGLALDFHNIEQTLGTGGTAPAVKARCEMEVDR IEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRINYNHYYMSDSGSFSAIPGSRPR</aaseq>

Gene Sequence

<dnaseqindica>5978..6109#5704..5877#5469..5600#5300..5398#5038..5109#4902..4958#4659..4832#4484..4578#4212..4311#3965..4117#2763..3893#2058..2168#1798..1960#1331..1425#985..1245#720..860#tcggctcctcgcgagttctttctcccgccctcccgccgcccgctgcccgcgcgggtcgccgatctccatatcgcgagcaaagcaaagcaggaaatgagatatactagtaaaaggtgaagtactcgagtatcttccccttccttctccttggcgtaagagagagagagatctcccgtctcgtcgtctcctccgcttccctcgcgccgagacgagtcgtccatctggcgagcagagcaggggagggggagggggaggggatcctggtgagcatccacatcctctttctggttcatctctcagctcccacccggaggagtacttttggtctggaatttgcttgcgctcgttaaccctagccttctcttctagttctagatctggaagaagcgagccttaaccttaatacaagtagtaacagtttgtttgttcccgcaaaagtttgggggttcaactgaacccccatgtcccaagttggatccgccactgatgttttgtgattttgggtggccattttggggacttgggtgcaatgttgcccaccctggtacaatctgcttttttttttttaattcaacctgcaaagttatgcaaatttatggtgtcaattgaaatggatggctaatacctagtccaatgtgaatgaagctatagtaaaaatacctggctcaatgcgcaattaactccttttcattcatgcaaatgtcagaggggatccacccatggttcttccccagctaaacgcaggattgatggaggccgatggctctgcgagcttcatacgcaagctgcagctcagcgtttctgatggccttcctcatgcggcgcctgttccagaactgagtacacaagagcatgaattggtgggtaattcattctgactgcttcacttctgttccttccattattagtgggaattgctgctatgcttcttttatgtgtatgatcgtgtagatatgcactatattggtgttgcacatgttacaggttaaaagtgtcttcgaagtgctccaaggctttgacacggtcttgctctactgggacaagactgcgccgggatactgtgagaaagcagggatctatgtttcgcacctgtcacagacgagcctcagagctgtgctcaagccttttctgtttgctgcaacatgcttgaagcaggtggagctctttgttgggagggtaagatcgtgcggtcatggaactccgacgctgagtgcatttgctagttcggtcgattcttggctaatggtgaggttgcaattcagactgcatagatttttcggggatgatgtttgttttgtccgaaattacattgttgttatgttaatatcagaggctccgcaaagcagctctgaaggaggaagagcagttgtttctttcagttgaaaggactataactctgctgggattgactgattctatgtcaaggtcatggtctattctactataacattacttttcttcatcagagtgaccattactttagtcaaggacctcttactgttgtacgaaatggataactaggttagcttttagtagtgatgttgtatgttactataggtgattctagagatatcagcaactctatgtaatgtgtgatggcaaaaaaagttgcatagagatatgagattatagagacatgatagtatagtctttttttttcctttttaccattttaggtagttttctaaaagccggagaggactgtacaactgacaacctgtgttttcagtttcatgcttctttatcacttgacagactgtggttttcactcaccccataatataaaatcttatgcagtttatgttctggagcagaacatttgtatcaagttgtgcaaggagctgtgcctgatgccttttggaattctggcgcacagatggcatctagtgaagtggcggttcatgctgtaaaccatctttttaagaagttaaatgaagtctgtcttgtggaagatggcgaggttgccacaaaaaaaccagttgtccaaatacttggtcttatttgtttattaacagaatgctcaactctcttacatttgaaatctctataaattccagggtgaaccttatcatatgctgcttgtgatattcgctggaaccttgttaccatatcttcagtgtcttgattcctggctctatgatggtattcttgatgaccctaatgaagaggtattgaaggaagacattttttgagctacatttgaaattattaactgatattcttaaatttaaagatttctctacacgttagttgtgaaatactgtaaggatggcctgtatcctttgctcgacctgagctacattggtgcaaacataaatcatgatgatatcattatgttataaacacaaatatttttttatttgttggattggcatttggcagagatcttaatcctattcgatttgtctcctgaaagtcacctataagtatatgcaattatgatcctgacctgtatatcttctatgagcatactataatcctttctagtataaggttattactcttgagtgtgaaatgtttctttgtgttgggctcattttttaagtttggtgagtcttataaacccttccgttttattaatgcctgctgaagagttgcgtgtgatcatgtagttaaacatcaccttgatgcctaatgtaatcctgttagggatgcctaagtcctttaattttaattttattgagcaactatcatgaaatgtgttacttaaatttgcatttttaaaacttccctgttgtggtttgggaacctgttttctgtagatgttcttttacgcgaacaaagcagttacaatagatcaaccggcattctgggaaatgagttatatgctgagagtacgaggaccacgaaccgatagctcatcaacattagctgacaatgaatctatcaggaaaaaggaattaatcaaccaggaaacaactgctgcagcagctctcttgaaatctagcaatcaaggttgcgcggatatattatgcccagtgttcttgaaagatattgcaagagccattttatctgctgggaaatcatttcagcttgttcagcatgttcaagagacacatcggattcaaactcgtgaagtcatacatgagtttaatattgatcagcatggcaattacattagtcaacagaagtttcggcctgatacctcaagtataagaattcaagataagcgtgaagatattattgaagaatctacaggccagtttggaaataatgcttgcaaaatggatttcttaactttgtctgagagtttcttgatatgcctatctggtctgttggaaaatggtgaccatgttgatgattacttaagaaagttgtgtgctgataatgctccagttaacaaaacaattgtgcacagtaagagtaatgtacaagaaacagaagaggtatgtggagaaaacagctctgagaagacttggttaaagctcctaagagatgctacatcaggaagggactatgatggcatggagaaaactttagcaaaaaatgctgttatgagggatccaacatttgtccctggagatcatcaagatgtatcttccactgaagtagaaagctatttcaacctatcttgctatgaaaacccaggcatcactgcttgtcaagaaatgctagagaggaacaaaaactcctggagcgacttaaatatctctaaaagtttccatcttcctccactgaatgatgagaacatacggaagtctatatttggtgatagagactcttcagggaccatccctggtgataccctatctacaacatatttccccagactagacggaactgattacaagtttggttttcagtttgatgattcagaatatatccgccaagaggatgacaggagaaccttggaggctctctatacattcccgactcttctgccatgtgtaaatgtgagactgattctgaagtatagtttcttgttcatgttttcttattagttgttaaccctttctcccttcaggaaaatgtcccgctgtcagagatcttacctttgcagaaagatagcacacttgcctcaagagctttgaagtttattcagagcatgagtttgagagatcctcttcaaccagttggtatcatccaagaatgcctttctaaatgtataaagagacaggtctgctcaaacattatactagcatttagttatttacgttatatatcttgttagtcatccgtataacaggtttttgcattttccccctcaacaggttgatcacattggcaagcaaatcttgtcaaagctaatgggtgactggagattaatggacgaactctttgttttacgtgctatttatttgctagggtcaggtattatgctatcaacctatcattgagctgttcttaacctctcgtaatattttccctgaaaaaaatctttttactatgtctaggttaaatacatgtttcatcaaagaaaaacattattttcaaaccaaataaagaaataaatacaattctattgaccaacttgagccttcaggtgacatgctgcagcagtttctggtaacaatttttgacaagctcgacaaaggaaatccctgggatgatgattttgagttgaatactttgctacaggtgattcactatgctaatctagtgcgacaaaattgatgccacataaggatcttaatagctctatcaattcttggctgcaggaatccataagaaactcagctgacaaaatgctgctgactgcgccagattctttggtcgtctcgttagcaaagcatgatacgcgcaacgatgaagaaactacatcaatttctaggaaaggtcgcgcacaaggttttggcatcgaggcacttgatgtgcttaattttacatataaggtatgcacaaaacagcaccaatattctgcgttctttaccatgtgttcatgttatgctgttgggtggcaggtgtcttggcctcttgatctgattgtcaatacggaggcactgaagaagtataaccaggtacttactttctagactaattatttaacagtgccatgtatttgatggcttttggccttttgctgttttgctcgatcaggtcatggcattcttactaaaggtcaagcgtgcaaagtttattttggacgaaactcgaaagtggatgtggaaggtacttatccatcctataaccctgccaccatcttatggaatctatttatttatttattttgcatgttgtcgtctgataaatctggaaacagtataaactcatagtgtttgatagttgggtacttggatttgctctgacttctcaatatgatagtttcattctgatgtatcaaacctttccccattggcagggcggaggcagcactatgcataattttaagcaacatttaatagttgagcagaagctccttcattttgttgatgcatttcatcaatatgtcatggatcgggtgagttgggtattttcgatccattcctttgtacatctctctactgtactcatgacacagttttgagtaggtataccatagtgcgtggactgagctttgtgatggcatggcatccgccactacactggatgaagtcatggaagttcatgaagcatacctctcttctattcagcgacaatgctttgtggcctctgataagttggtgagtaacttgtcgttcttattacaatcatcaaagcttaattccaaaaactttattctagctaagagtgttcattgcggcaatgaacattgcctgtgtgcagtgggccctcatagccagtcgagttaagaccattcttggattggcacttgacttccacaacatagaacagactcttggtactggtggaactgctccagccgtcaaggcaagatgcgagatggaagtggatcgcatcgagaagcaatttgacgagtgcgttgtatttctcctgcgggtatgcttccatctactaccagcaaaactcaatgatctcctatgttgtctgaacttggtattttcagtagattcatgacaatctcaatatcctttttcagatcctatctttcaagctcaatgttggtcacttcccccatctggcggatctcgttacgagaatcaattacaaccactattacatgtctgacagcggaagcttctctgccatccctggatctcggccacggtagccgtcttgcagtgctcataggaatataggatcttaggtgttgctctccattttgtggggaatgtatatattctggatttgtaaagtgtggtcaatgctgatgcagccaggaaggcatcaccatatcccaggatgcaaatgcattcttacagaatgtttaggtatttgtaggttgtaagttttgtgccagtatggttttctgtaagctgtaaatttttgcgccagtatgttgttgttttttttaaaaaaaatacttatccc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0523300, RefSeq:Os02g0523300