Os02g0523500

From RiceWiki
Revision as of 02:32, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0523500| Description = Similar to 110 kDa 4SNc-Tudor domain protein (Fragment)| Version = NM_001053520.1 GI:115446410 GeneID:4329508| Lengt...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os02g0523500

Description

Similar to 110 kDa 4SNc-Tudor domain protein (Fragment)

Version

NM_001053520.1 GI:115446410 GeneID:4329508

Length

6591 bp

Definition

Oryza sativa Japonica Group Os02g0523500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:19956733..19963323

Sequence Coding Region

19957100..19957288,19957486..19957863,19958619..19958813,19958893..19958970,19959035..19959220
,19959296..19959526,19959605..19959958,19960056..19960253,19960337..19960507
,19960624..19960731,19960830..19961048,19961133..19961339,19961446..19961664
,19961783..19961857,19962217..19962369

Expression

GEO Profiles:Os02g0523500

Genome Context

<gbrowseImage1> name=NC_008395:19956733..19963323 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:19956733..19963323 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtcagccactggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctcatcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatacctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaaaggagcaaggcccaaagggcggtgaaccgagtccatatcttactgagctgctaaggttggaggaagttgctaagcagcagggtttaggtcgttggagcaaggaacctggtgctgctgaagaatcaataagagatcttccaccatcagcaattggtgaagctagtggttttgatgcaaagggttttgcagttgcgaataaaggcaagagtctggaagccattgttgaacaagttcgtgatggcagtacagttcgtgtttacttgctcccaagtttccaatttgttcagatatatgttgctggagttcagtctccatccatggggaggcgcccaccgaatcctacagtggtggctgcagcagagagtactgctgatggcgctacaaacggtggagattctgaggaagctccagcaccactgactacagcccaaaggcttgccgcagcagcggtttctactgaaattccaccggacaggtttggaatagaagctaagcacttcacagagacacgggttctcaatagagatgtgcgaattgtggtggaaggcacagatagtttcagcaatataattggctcagtgtattactctgatggggatacattgaaggatctggcccttgagcttgttgaaaatggtcttgccaagtatgttgagtggagtgccaacatgatggacgttgatgcaaaaataaagctgaagaatgctgagcttcaggctaagaaggaccagttgagaatttggacaggatttaagccaccagtgacaaactcgaagccaatccacgaccagaaattcactggaaaagttgtagaggttgtgagtggggattgcatcattgttgctgatgacgcagctccttacggaagtccttctgcagaacgccgggttaatctttcaagcattagagctcctaaaatgggcaaccctcgtagagatgagaagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaagcaagtgactgttgagatggaatactctagaaggatcagcactgtggatggacagcccacaacaaacacagctgatgccagggttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtttcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctcaaggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgacctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaagaatcacctgtcatgcacataacagacttgacaacggtttcagcaaagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgttgaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcattgccttctctttctctggtgttagatgccctggtaaagatgagccctactcgaacgaagctattgctttgatgaggaggagaattctacagcgagatgtggagatagaggttgaagcagttgatagaactgggacattcttaggttccttatgggagtccaaaaccaacatggcttctgttcttctggaggctggtctggccaagcttagttcatttggcttggataggattccggatgcaaatgttctaatgagggctgaacagtctgcaaagcagcagaaactcaagatctgggagaattatgtagagggtgaagaagtttccaatggatctgcatctgaatccaaacaaaaggaaattctcaaggttgttgtaactgaagtccttggtggtggaaagttctatgtccaaacagttggtgaccatagagtggcttccattcaacaacagcttgcatctttaaaacttaaagatgcacctgttattggtgcttttaatcctgtgaagggggaaatagttcttgctcagtttagtgctgacaactcctggaatagagcaatgattgtgaatggacctcgaggagctgtatcatctcaagacgacaagtttgaagtattctacattgactatggcaaccaagaagtcgttccttacagtcgcatacggcctgctgacccatcaatttcctcttcgcctgctcttgctcagttgtgcagccttgccttcataaaagtgcccaacctagaagatgattttggccatgaagcagcagtctatctgaatgattgcttgctcaacagccaaaaacaatacagggcaatgattgaagagcgtgatacttctggtggaaagtccaagggacaaggcactggaactattctgattgttacactggttgacgcagagacagaaaccagcatcaatgctaccatgcttgaggaagggcttgctcggcttgaaagaagcaagagatgggatactagggagagaaaggctgctctccagaatctggaacagttccaggagaaagcaaagaaggaaaggctgcagatctggcagtatggtgatgttgaatctgacgaggaagagcaagctccagcggctaggagaactggagggcgtcggtag</cdnaseq>

Protein Sequence

<aaseq>MASATGASGWLRGKVKGVTSGDCLLIMGSTKADVPPPEKSITLS YLMAPRLARRGGVDEPFAWESREFLRKLCIGKEVTFRVDYTAPNVGREFGTVYLGDKN VAYSIIAAGWARVKEQGPKGGEPSPYLTELLRLEEVAKQQGLGRWSKEPGAAEESIRD LPPSAIGEASGFDAKGFAVANKGKSLEAIVEQVRDGSTVRVYLLPSFQFVQIYVAGVQ SPSMGRRPPNPTVVAAAESTADGATNGGDSEEAPAPLTTAQRLAAAAVSTEIPPDRFG IEAKHFTETRVLNRDVRIVVEGTDSFSNIIGSVYYSDGDTLKDLALELVENGLAKYVE WSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPPVTNSKPIHDQKFTGKVVEVVSGD CIIVADDAAPYGSPSAERRVNLSSIRAPKMGNPRRDEKPDNFAREAKEFLRTRLIGKQ VTVEMEYSRRISTVDGQPTTNTADARVLDYGSVFLGSPSQADGDDVSSIPSSGNQPGI NIAETLLSRGFARTSKHRDYEERSHYFDLLLAAESRAEKAKKGVHSAKESPVMHITDL TTVSAKKARDFLPFLQRNRRHSAIVEYVFSGHRFKLTIPKETCSIAFSFSGVRCPGKD EPYSNEAIALMRRRILQRDVEIEVEAVDRTGTFLGSLWESKTNMASVLLEAGLAKLSS FGLDRIPDANVLMRAEQSAKQQKLKIWENYVEGEEVSNGSASESKQKEILKVVVTEVL GGGKFYVQTVGDHRVASIQQQLASLKLKDAPVIGAFNPVKGEIVLAQFSADNSWNRAM IVNGPRGAVSSQDDKFEVFYIDYGNQEVVPYSRIRPADPSISSSPALAQLCSLAFIKV PNLEDDFGHEAAVYLNDCLLNSQKQYRAMIEERDTSGGKSKGQGTGTILIVTLVDAET ETSINATMLEEGLARLERSKRWDTRERKAALQNLEQFQEKAKKERLQIWQYGDVESDE EEQAPAARRTGGRR</aaseq>

Gene Sequence

<dnaseqindica>6036..6224#5461..5838#4511..4705#4354..4431#4104..4289#3798..4028#3366..3719#3071..3268#2817..2987#2593..2700#2276..2494#1985..2191#1660..1878#1467..1541#955..1107#ccgttccgcgcatcgctacaccccaaaaacctctcacgcgctctctcccctcgcctcgccgcgccgctgcgtcgtcggcgacgggatcgtgggctcgtggagagggcaccgccgccgccgtcgccgccggacggatctagccgtctacaccccgctccccgccctctctctcgaggcgatcgcgccgagctgagctgaggtgaggtgagccgctcccccctgatccgatgcctccgtctccatctcgtgcgttgttgggtgtgccggggctcagatctggcggtctggggtcccgccgccgcccgatctgtgggtcgcgggtgtcgattcgggcgggcggcggcggcggcggctctactctgctccgccgttttgctcggggggtctggttccggacgccgggaatttcacgagatcgcgtgggtttctggatgggctaggcgtcagatctgcgcgtgctgctaccgttgcagctttttttttcttcttcttcgtggcgtatccgtgagatttgcatctgtacgtgcttgcgcattgcgggtggtttactctgccgtgcactgggggccatcgctgcagaaaggtggccggggtttgagcttttgacccctggagtggttggaatcttgcagttatttggggtggggtgtgggccaaatctttcgggggcaattttccccaagtttccttttagagaaacatgctcgtttctagccataccagtgtaggataagagcgtgatacgtgctgaccacttacgttcctcctgaatgaatatctgattgatgatagttagctgcttcttgtttagggtggggggtatctatcgtaattcattttcagataggagaaaatttgtgggttggtacgataggttagcccaggcatactaaatttggctttggctaagctggttctatcctttcgtttgatcgcagggtgtagcttactatcatggcgtcagccactggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctcatcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatacctcatggccccaaggctggtaagatttatatggacttgatgtagtcagacaatataacacattttctaggttcatttgtctcatgaatttgtggaagtgtttggtctgttccaaagtggacgacttttgtgtaacccctaaaactaatggaaatactccatccttccttttttatatgaccaatgtcaaacaaataaaaccagaggcagtataatagtgacaatcggactctttccaccaccgcatgcattaatattcctacgctatggttttatattttctcgtgtagttcaaaacttatgaatttattcttattctccagtctttccctccctttttgctttatgtattgaaactaaaactttgtgctgctcaaggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaaactctgcataggaaaggtactccatgtgaattttagatcttctttgaatttacttaaatgcatagatatcgattgtgtttgtagaaaacatgccagtttccctgttaccaatgaaaaattcaaacatgttacaggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaaaggagcaaggcccaaagggcggtgaaccgagtccatatcttactgagctgctaaggttggaggaagttgctaagcagcagggtttaggtcgttggagcaaggttagcaaatctttttgtttctgccccctccccctttttctttgtactgcaagagatgaatgctttattgtttgcttttttatgcatgttctttttaaactttcaggaacctggtgctgctgaagaatcaataagagatcttccaccatcagcaattggtgaagctagtggttttgatgcaaagggttttgcagttgcgaataaaggcaagagtctggaagccattgttgaacaagttcgtgatggcagtacagttcgtgtttacttgctcccaagtttccaatttgttcagatatatgttgctggagttcaggtatgcttgtcatggacccttttgtctactattgtttcttttttcatgtttagaaaggtgaatgttgattagacaaaaatgtagtctccatccatggggaggcgcccaccgaatcctacagtggtggctgcagcagagagtactgctgatggcgctacaaacggtggagattctgaggaagctccagcaccactgactacagcccaaaggcttgccgcagcagcggtttctactgaaattccaccggacaggtttggaatagaagctaagcacttcacagagacacgggttctcaatagagatgtaagacatatcatgattcaaagtttttaatcctctttgcaaacaataattactatatttcataagttccttctgttctcttttgaactttcctctaggtgcgaattgtggtggaaggcacagatagtttcagcaatataattggctcagtgtattactctgatggggatacattgaaggatctggcccttgagcttgttgaaaatgtacgatcaattatttatccactacctttcatttgactcacatgattctttttaagatttattttaataatgagatctgcttgcattgaaattcttttgtatgattaattatgcagggtcttgccaagtatgttgagtggagtgccaacatgatggacgttgatgcaaaaataaagctgaagaatgctgagcttcaggctaagaaggaccagttgagaatttggacaggatttaagccaccagtgacaaactcgaagccaatccacgaccagaaattcactggaaaagtgggttccctgttctcacaagtagtgtattcaacatgatcatgcgattgaagctaatttgctttgtgttgatcctttcataggttgtagaggttgtgagtggggattgcatcattgttgctgatgacgcagctccttacggaagtccttctgcagaacgccgggttaatctttcaagcattagagctcctaaaatgggcaaccctcgtagagatgagaagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaagcaagtatgtacataggttttgagatattccatcagaagttccataacaagttgttacctttgttgaaaatttattgattttttctccttcctatttccaggtgactgttgagatggaatactctagaaggatcagcactgtggatggacagcccacaacaaacacagctgatgccagggttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtttcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctcaaggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgacctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaagaatcacctgtcatgcacataacagacttgacaacggtttggcactcttgcttgttcttttacttttacttttcctttggcacctttattaactcgtagttcctatgcgctcaggtttcagcaaagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgttgaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcattgccttctctttctctggtgttagatgccctggtaaagatgagccctactcgaacgaagctattgctttgatgaggaggagaattctacagcgagatgtggaggtatgactcttgtgcatctttggttaatccacctccatggcttcgatgtctaaataataccatgtgattctacagatagaggttgaagcagttgatagaactgggacattcttaggttccttatgggagtccaaaaccaacatggcttctgttcttctggaggctggtctggccaagcttagttcatttggcttggataggattccggatgcaaatgttctaatgagggctgaacagtctgcaaagcagcagaaactcaaggtaaccacttctattcttgaactacacaaggagaaaacatgctgacatccttttctttttcaagatctgggagaattatgtagagggtgaagaagtttccaatggatctgcatctgaatccaaacaaaaggaaattctcaaggtttgttgatcaagaatatattggaatgtacagacttgccattttgtaaacaaactgttaacctggtttccatattcaggttgttgtaactgaagtccttggtggtggaaagttctatgtccaaacagttggtgaccatagagtggcttccattcaacaacagcttgcatctttaaaacttaaagatgcacctgttattggtgcttttaatcctgtgaagggggaaatagttcttgctcagtttagtgctgacaactcctggaatagagcaatggtacgtttcacttctatcctgatcttgaaagttgcctgtatgtctcacttctatgttgcaagtcaaaactaattatgtgttggggtcatggtttaggtttatgctaacctaagcagcttactagaacttcacaaaatttcttttggtatttacatttttccttgcaaagggggtttaatggcattaattgtgttgtgactttagaatgataatatgctatctttgcaaatcaattgttcccttggttagctgttctgtatagtcaagtaaaaatttctacaagtggtgggtcataccaattgagtaattgcttattttcataaatgtttgggccacttgagttaatttggacccaggaaatgggtgatattgttagaatccattgtaattcatttgacttgctcaaacttgtgttcctgctaaaatgaaggattggataaaagggacttagatgatatattctttagttgaatatttaagggacttggggcattagtgttttatgccaatgttgtttttacctcatagcttcgctaatgttctgctgttgattgcctaaacagctagtgatttcatcctgttgttttaattacatgatccatcatccatgggatcatctctaggaaattgcacaaactcatgttttattcttatgaaccattttagtcctggacttgttaagttgaacattcccgtttctagtttctggttttcaaaaataattaggaagtatatccattttaactgatctgcagattgtgaatggacctcgaggagctgtatcatctcaagacgacaagtttgaagtattctacattgactatggcaaccaagaagtcgttccttacagtcgcatacggcctgctgacccatcaatttcctcttcgcctgctcttgctcagttgtgcagccttgccttcataaaagtgcccaacctagaagatgattttggccatgaagcagcagtctatctgaatgattgcttgctcaacagccaaaaacaatacagggcaatgattgaagagcgtgatacttctggtggaaagtccaagggacaaggcactggaactattctgattgttacactggttgacgcagagacagaaaccagcatcaatgctaccatgcttgaggttcgtgctacttgctacttaacattatgaattgtggtgatcttaaattagttgtcggttagcttctgcatagtctgctgtcacatatgaatgctactcaacattgcttctgtttgagattgaaggctgcttgcaaactagtcacagagatatgtgaaattgtcttcgttgctaatattcccattctgtttatgcaggaagggcttgctcggcttgaaagaagcaagagatgggatactagggagagaaaggctgctctccagaatctggaacagttccaggagaaagcaaagaaggaaaggctgcagatctggcagtatggtgatgttgaatctgacgaggaagagcaagctccagcggctaggagaactggagggcgtcggtagatgagagaaggctgctcaagacagcaatggcgtcggtaagctatcatcaagttttggacaccgggtcagactctaccgggagctttagatgaaaaacatagagaaagaaaatgaggattaccttatttatgcagttagaacagaacttagcgaggcgaaacttccttagtttgagcactgttgcttgatgctgaactattattccgttttacaccgtaatgttgaggttaagatacattgtttttcccctaaacttaataatgtcgtgtacttggtgcactgcagttctttgtagacacaacataataccgagagcgcagtcaattaaaattcaggattgaacttaaagaggtatcccaagattgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0523500, RefSeq:Os02g0523500