Os02g0539500

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Revision as of 02:33, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0539500| Description = VQ domain containing protein| Version = NM_001186083.1 GI:297721298 GeneID:9268455| Length = 1499 bp| Definition = ...")
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Gene Name

Os02g0539500

Description

VQ domain containing protein

Version

NM_001186083.1 GI:297721298 GeneID:9268455

Length

1499 bp

Definition

Oryza sativa Japonica Group Os02g0539500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:20858661..20860159

Sequence Coding Region

20858856..20859683

Expression

GEO Profiles:Os02g0539500

Genome Context

<gbrowseImage1> name=NC_008395:20858661..20860159 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:20858661..20860159 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgcgtcggatggccgcccgtcgccgcggagccggcagctgcagggcccgcgcccgccgcggctggccgtcagcaaggactcccacaaggtcaggaagccgcccgtcgtgccgcagccgcgcgggggcggcggggtggtggctgggccgtcgcggccgcagcagcagcagcagccgcgggcgccggtcatcatctacgacgcctcgccgaaggttattcacaccaggcccagcgagttcatggcgctcgtccagcgcctcactggccctggctccgccgccgtggcggcggtggctgctcccgtggccgctggcttccacaccgaggcgtcgtcgtcgtcgtccgcctccgcctccgcgctgccgccgcagttccagctgccgcaggagttcatgctctccccgaccgccgcgctctcccccgccgcgaggtacgccgccatcgagaggtccgtacggccgcttccccccaccaccgcgcactactacaccgccgacgccgacgaccccatcctgctcgacgtcgacggcgacgccgccgcctttgcggcggccctcggccccgcccgcccgagcatcctctccccggtgccctccgcgctgccgcccgcggcgtcgtcggggctcttctccccgctcgaccaggcctccctctcctggctcagcgacctcagccccttcctccactccgccggcgccgccgccgcacccccgccgccgttcgcgccgagcccccgcagcctgctgctgtccacgcccaccatgccgtcgccggcgaccttctccgtcatggaattcttcagcagcaacttcccggacctgtaa</cdnaseq>

Protein Sequence

<aaseq>MDASDGRPSPRSRQLQGPRPPRLAVSKDSHKVRKPPVVPQPRGG GGVVAGPSRPQQQQQPRAPVIIYDASPKVIHTRPSEFMALVQRLTGPGSAAVAAVAAP VAAGFHTEASSSSSASASALPPQFQLPQEFMLSPTAALSPAARYAAIERSVRPLPPTT AHYYTADADDPILLDVDGDAAAFAAALGPARPSILSPVPSALPPAASSGLFSPLDQAS LSWLSDLSPFLHSAGAAAAPPPPFAPSPRSLLLSTPTMPSPATFSVMEFFSSNFPDL</aaseq>

Gene Sequence

<dnaseqindica>196..1023#aacagcagcgcacctcacctccgccgctcgcctcgcctcgcctcgcctcgccttcctcctcccatcctcaccccgttgaatttctcccacctccgatttcttcttcctcgttgaaccattccccacccttcttctcctcctcatcctcctctccgcgccccgcctctgcggcgaggtaggtgttcgatcggtcggatggacgcgtcggatggccgcccgtcgccgcggagccggcagctgcagggcccgcgcccgccgcggctggccgtcagcaaggactcccacaaggtcaggaagccgcccgtcgtgccgcagccgcgcgggggcggcggggtggtggctgggccgtcgcggccgcagcagcagcagcagccgcgggcgccggtcatcatctacgacgcctcgccgaaggttattcacaccaggcccagcgagttcatggcgctcgtccagcgcctcactggccctggctccgccgccgtggcggcggtggctgctcccgtggccgctggcttccacaccgaggcgtcgtcgtcgtcgtccgcctccgcctccgcgctgccgccgcagttccagctgccgcaggagttcatgctctccccgaccgccgcgctctcccccgccgcgaggtacgccgccatcgagaggtccgtacggccgcttccccccaccaccgcgcactactacaccgccgacgccgacgaccccatcctgctcgacgtcgacggcgacgccgccgcctttgcggcggccctcggccccgcccgcccgagcatcctctccccggtgccctccgcgctgccgcccgcggcgtcgtcggggctcttctccccgctcgaccaggcctccctctcctggctcagcgacctcagccccttcctccactccgccggcgccgccgccgcacccccgccgccgttcgcgccgagcccccgcagcctgctgctgtccacgcccaccatgccgtcgccggcgaccttctccgtcatggaattcttcagcagcaacttcccggacctgtaaactaatcccagctcacctcatttgattactccctctcgcgtccgtgtcacccccggggttaattactttaatccttaattaatcttttaccgcgtgcgccggcgaggttaaaaagtaaaaaatcacattgccgcgccggtgaggtaacttccagcgaggcgggcgggttggcgagatggcacggtcgttcgattttttaatggaggaaaaagaaaacaatattctcagatattttctcctgtgggtgaggggaagttggcttggctaagctagcattaattgttggagtaggtgaatttctcttctcatacttgcttcctctcctactgttaatgtattgataatttgatattataatcagctttaggtaggctaacctctcgttggctttatttttcttcctctttttcttcttttcgttctgctgattgtgtaacttgtaaacgaaggagatgattgattggttgatttaatgc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0539500, RefSeq:Os02g0539500