Os02g0593700

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Revision as of 02:38, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0593700| Description = Similar to TA4 protein (Fragment)| Version = NM_001053837.1 GI:115447044 GeneID:4329846| Length = 5727 bp| Definiti...")
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Gene Name

Os02g0593700

Description

Similar to TA4 protein (Fragment)

Version

NM_001053837.1 GI:115447044 GeneID:4329846

Length

5727 bp

Definition

Oryza sativa Japonica Group Os02g0593700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:23839725..23845451

Sequence Coding Region

23840047..23840151,23840251..23840850,23840947..23841096,23841256..23841483,23841656..23841770
,23841860..23843127,23845089..23845160

Expression

GEO Profiles:Os02g0593700

Genome Context

<gbrowseImage1> name=NC_008395:23839725..23845451 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:23839725..23845451 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtccggccggagctcgccgatgtacgaggggctcgcgtcgcgtcccgacgagtgggacgtcgtcctcaaggtgaagtatggtgaaactcttaagaggttcggtgggtatgtgcaaggaccacaattcagcctgaacttatccgctctccggtccaagattgcatctgcttttaagtttggttcggatgtcgacttcattctgacttacactgatgaggatggggatattgtcatgctggatgatgatgatgatctgcatgatgctgctattcatcagaaactgaaccccctcaggattaatgttcagttaaacaacagccacactgcagcacctcaggccaaacagcaggattcagataatatacctctcaggtccaccaccactgaagacccactagctcatattaaatcagttatcgatgaggttttgaagccgatatctatgaagtccatccaggagccagttcctgagacacttgcgaagctgtcccatgaagtacttgaagccgcatcaccacaattagctgagctaataaaaccttttgttaaactggttacaccaagcaacaacaacccatctaatgggcatgctgatggttcctgcagctcctcaactggtttgccccaaacacaggttgatcccaaaactaatgacgagcccaaaatagacacaagtttggggtcgcaacccttggacacgcagaactccaaatcatctggtgctagaggtcttaagactctgtcagttgaggctcctgctacatcgggtgttaaatcttctcaaggtcaacaggcatcattatacccttccattgaggagttgctgttctccccctttttaccgaactcaggtgatgacaaatctgccagcaagggaattagtgatgctcaaagcaagggaaaatctgttatgacctctgctacaccacctacccctcctgctgctcctgctttccgtccagctcctccaattccatctctgaatgattggtctcagccaccagcacgtggatcgacattttacccatctatttggcagtctgaagctgatccaaaagccaatagtgattccagatggcgtgttccattgtgcagagctggccatccattccaaccccatgctcccctgagccgtccacccccaccaatgcctgcaccaatgagctatggaccttctccacattttccttaccctggccgcctcttgtcctctggccatctgcatggagaccttggtaataacattgagaactcaccagcacgcacattccatagatggattcagtgtgatggttgtggagtgcaaccaattgttgggcctcgatacaagtctaaaacaaaagaagattatgatttgtgtgatgcctgctttcatcgcatgggcaatgaggtcgagtacaccaggattgacaagccactcttaccccagagattactgagagaccctacattgtgtcgcaagatccattcacgggctgcgatgaagtcaaagcgggagaaacttgaaagtcgcttcattttggatgtaactgtcctggatggaacattgatggcaccttcaactccgtttactaagatttggcgtatgcataacaatgggtctatcatgtggcccttgggcacacagcttatatgggttggtggcgaccagtttgcactgcagacctatgttccattagagattccagtggacgggtttcctgttgatcaggagattgatgttgctgttgattttgtggcacctgcaaggcctgggaggtatatatcttactggaggttagcatcaccttctggccagaaatttggtcagcgtgtttgggttcacatccaggtggaggatccttcttttgtcagtaacaacaggactgccgctataaacttgaatttgcccccagaaagcaatatcacaaacacaagtaatttgattgatgtcaatattgagcctgtggatcaagtcttcaaccaacatgtcaatagcacaaacaaggagttacttgaacatttgatacaccaccagattgacgagcccaagaatcctgagcctgctccattacctgtgcccattgtttcttccacaacatctcttcaccccatcattgatgttgatgttccctccagttcaactgctgctgcttttgtgcctgtctttgatgagcctgcgcctgaacctgctgtgactcctgtgcctccaactgttaatgtgcctgctggtaatgcacctgcgtctgttggtgcatcatcatctgatcatcatggcattgacaatctcacagaagagaaactgctgaaggaacttgaggaaatgggttttaggcaggtcgatctgaacaaggagatactcaggcagaacaagtacaacctggagcagtctgtcgatgatctctgtggcgtcagcgaatgggaccctctcctggaggagttgcaggaaatgggctttgaggacactgagataaacaaggagatgctcgagaagaacggaggaagcatcaagcgggctgtgatggacctcatcgctagggagaagaaagaccagtga</cdnaseq>

Protein Sequence

<aaseq>MSGRSSPMYEGLASRPDEWDVVLKVKYGETLKRFGGYVQGPQFS LNLSALRSKIASAFKFGSDVDFILTYTDEDGDIVMLDDDDDLHDAAIHQKLNPLRINV QLNNSHTAAPQAKQQDSDNIPLRSTTTEDPLAHIKSVIDEVLKPISMKSIQEPVPETL AKLSHEVLEAASPQLAELIKPFVKLVTPSNNNPSNGHADGSCSSSTGLPQTQVDPKTN DEPKIDTSLGSQPLDTQNSKSSGARGLKTLSVEAPATSGVKSSQGQQASLYPSIEELL FSPFLPNSGDDKSASKGISDAQSKGKSVMTSATPPTPPAAPAFRPAPPIPSLNDWSQP PARGSTFYPSIWQSEADPKANSDSRWRVPLCRAGHPFQPHAPLSRPPPPMPAPMSYGP SPHFPYPGRLLSSGHLHGDLGNNIENSPARTFHRWIQCDGCGVQPIVGPRYKSKTKED YDLCDACFHRMGNEVEYTRIDKPLLPQRLLRDPTLCRKIHSRAAMKSKREKLESRFIL DVTVLDGTLMAPSTPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTYVPLEIPVDG FPVDQEIDVAVDFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVEDPSFVSNNRTA AINLNLPPESNITNTSNLIDVNIEPVDQVFNQHVNSTNKELLEHLIHHQIDEPKNPEP APLPVPIVSSTTSLHPIIDVDVPSSSTAAAFVPVFDEPAPEPAVTPVPPTVNVPAGNA PASVGASSSDHHGIDNLTEEKLLKELEEMGFRQVDLNKEILRQNKYNLEQSVDDLCGV SEWDPLLEELQEMGFEDTEINKEMLEKNGGSIKRAVMDLIAREKKDQ</aaseq>

Gene Sequence

<dnaseqindica>5301..5405#4602..5201#4356..4505#3969..4196#3682..3796#2325..3592#292..363#ggttttgcgcgataaaagggggggcatcgaggagggactcggccgcatcgccaccgccactctctcctctcctcctctctctctctctctcgcaccaccgctctcttccgccgctgcggctcacggctacgcagctctcttcccctcctcctcggctccgctctcttcgatcgatctagggtttggtcttctgttgggggattgttgttgctcttccgcgcgatcgatcgacgccgcgtcctgagggtttgaggggtttccgccctcccgccgcacgcccgcacccccgcgatgtccggccggagctcgccgatgtacgaggggctcgcgtcgcgtcccgacgagtgggacgtcgtcctcaaggtgagatgatcgtctatttttcaggattgagctgtggttttgttttgtgattagggggaggggatggcggagggggaaggggaaggggaaaggggaatcgctcctggtgggggtttgggggaagcgtggggggcttgcgtacttatcgttttcgtagggtttgattgacgaaatgtgtggtgttgcgggatttgtgtacgctagttagtttttttttggcctgtgagaaattaggggagtttgattactctttgttagcttagaggtctgccctggtctgatttttttttctttttttaagaatcgtcagctcgttttgatgaatgtcgattcctccgactgttgatgacgcgcgcctgcctggtgttaaactaatcaaaaaaagaaaaaaaaaagaagagccttcatctttttgcacaaaacaaaaatcatactcctacatgagttcagtttctaagatgtattctattcttttaccattctgatgggtgttgggtattggtcagaaaaaaataattcagccgtccttaataagtactcctaacaattattagtggtctggtaccatttcttaggcgtatgtttgagctgagtatatttcttgttgttttgatgcaattattcacgtacaaccgtgcttagtatgtttattgtgatttgtttcctttatggcctcacttgtatatgctcatgtgcttacttcttgactgtactcgaccacatgcaaactttctgaatgtttccaaacctcaaaacttcttgaacattcgattatctgctagtgtgaagttccctgtttgattggtgataggaatttatttgtctagtgggatcatgatcttgggattaaatattccctgggccaggggaggtagtgaggtatatggctaatctaaattctaaaacctccagctcatgggggagaggtaataatacatcttaccatttgtaggcaaactattgtcttcagcttcaaatccgtgtaactttcacatgtacaatgataatctagaatgtacttgcactttgttcaactgtggaaatgtttttactctgtaggttttactgttgttatgcctttttctaattgataggtacgatgattatgatattactgttatttgaaatgaaatcgggccaatattttgtcctagctgagataccgagatttaacatcttcagtttgtctatgctttcagagttcatgcttgctttataaacacacgagtatattttgagttccactgttggtaaaataaccaaaacttctctaggatattttgccttttaatatactattaccttatacagtttatctacattctatctaatgatatatatgaaacaagtgatgccctcgttattgtacacttcatatagaacctttttcctgaatccggtgatgcctggagaaacattgcccaaaggaagggctaaacccatctattcaattaggagcccagtaataccataggagtctgtctgagaaattaactacccccacaatgaattattgtatagaccaagtgcagaaagtcattgagccttagcatgggtttgttttcactgctcctttttattttcatattttaatgttcatctagcttcctctttcttaatcaagttgcaacagatatatttttgcatcaaggaaatatggcaactgatgaaaataattcaatcttactatcctaggctcaaattagaatagtagacatcacaaaaaataagtgattaaactaaatcctctaccatctgaatggaccctatggatcttcaactattctttcaactgacttcctataaatatgtaatgcagtttggatatgtgttatctagtccaatttaatttcttgatggtaagaatcatacattgtctttcattgttcgtgtgttttgtgttgtttgattcaaattttgttgttagcagttctcaaattatcccttttcacatatttcaggtgaagtatggtgaaactcttaagaggttcggtgggtatgtgcaaggaccacaattcagcctgaacttatccgctctccggtccaagattgcatctgcttttaagtttggttcggatgtcgacttcattctgacttacactgatgaggatggggatattgtcatgctggatgatgatgatgatctgcatgatgctgctattcatcagaaactgaaccccctcaggattaatgttcagttaaacaacagccacactgcagcacctcaggccaaacagcaggattcagataatatacctctcaggtccaccaccactgaagacccactagctcatattaaatcagttatcgatgaggttttgaagccgatatctatgaagtccatccaggagccagttcctgagacacttgcgaagctgtcccatgaagtacttgaagccgcatcaccacaattagctgagctaataaaaccttttgttaaactggttacaccaagcaacaacaacccatctaatgggcatgctgatggttcctgcagctcctcaactggtttgccccaaacacaggttgatcccaaaactaatgacgagcccaaaatagacacaagtttggggtcgcaacccttggacacgcagaactccaaatcatctggtgctagaggtcttaagactctgtcagttgaggctcctgctacatcgggtgttaaatcttctcaaggtcaacaggcatcattatacccttccattgaggagttgctgttctccccctttttaccgaactcaggtgatgacaaatctgccagcaagggaattagtgatgctcaaagcaagggaaaatctgttatgacctctgctacaccacctacccctcctgctgctcctgctttccgtccagctcctccaattccatctctgaatgattggtctcagccaccagcacgtggatcgacattttacccatctatttggcagtctgaagctgatccaaaagccaatagtgattccagatggcgtgttccattgtgcagagctggccatccattccaaccccatgctcccctgagccgtccacccccaccaatgcctgcaccaatgagctatggaccttctccacattttccttaccctggccgcctcttgtcctctggccatctgcatggagaccttggtaataacattgagaactcaccagcacgcacattccatagatggattcagtgtgatggttgtggagtgcaaccaattgttgggcctcgatacaagtctaaaacgtaagattttaattgagctattgctctatctagtttctttttcctatctcagtatttgacatccctcctcttcgcctctttgccaacagaaaagaagattatgatttgtgtgatgcctgctttcatcgcatgggcaatgaggtcgagtacaccaggattgacaagccactcttaccccagagattactgagagaccctacattggtgagtacccaatttgtaggcatgagtgcacaggcatacgcttgcacgtgtatgtttgtcgatgcattatttagcaaactcatccatcctgtactctggtttgtataaataggtttaaggacacaaaataatatattaacaattagtttgtcctataatttcttggtttcagtgtcgcaagatccattcacgggctgcgatgaagtcaaagcgggagaaacttgaaagtcgcttcattttggatgtaactgtcctggatggaacattgatggcaccttcaactccgtttactaagatttggcgtatgcataacaatgggtctatcatgtggcccttgggcacacagcttatatgggttggtggcgaccagtttgcactgcagacctatgttccattagaggtaggtactatgcatactgtgacctcttttcagtttactgttctaattgtagttatgcatactgtgacccctgttcagtttactgttttgactgtagtttagactgcatgctatttaaaatatgtaaaatcattaaacctgagtttgtgttctgtgcagattccagtggacgggtttcctgttgatcaggagattgatgttgctgttgattttgtggcacctgcaaggcctgggaggtatatatcttactggaggttagcatcaccttctggccagaaatttggtcagcgtgtttgggttcacatccaggttgtcaactctaccattccttttgtccatataggtctagaatcttgacactcatacctatctttcttaacatctaaattctgattgcatctgcaggtggaggatccttcttttgtcagtaacaacaggactgccgctataaacttgaatttgcccccagaaagcaatatcacaaacacaagtaatttgattgatgtcaatattgagcctgtggatcaagtcttcaaccaacatgtcaatagcacaaacaaggagttacttgaacatttgatacaccaccagattgacgagcccaagaatcctgagcctgctccattacctgtgcccattgtttcttccacaacatctcttcaccccatcattgatgttgatgttccctccagttcaactgctgctgcttttgtgcctgtctttgatgagcctgcgcctgaacctgctgtgactcctgtgcctccaactgttaatgtgcctgctggtaatgcacctgcgtctgttggtgcatcatcatctgatcatcatggcattgacaatctcacagaagagaaactgctgaaggaacttgaggaaatgggttttaggcaggtcgatctgaacaaggagatactcaggcagaacaagtacaacctggagcagtctgtcgatgatctctgtggcgtcagcgaatgggaccctctcctggaggagttgcaggaaatggtaagatcacatgtgccctattctggacagtgctcacagcctcacaggcacgaatgtattggcaaggttctgaagttagctgttgtttcaccttttcagggctttgaggacactgagataaacaaggagatgctcgagaagaacggaggaagcatcaagcgggctgtgatggacctcatcgctagggagaagaaagaccagtgaagatcgtgtgctcttgagccatccctatctataacctaactatgtgtgtatatgcgtaaataatgtgacgaggtgtaaggctagcgccggccgccggggctgctgctacagtctcagggcctgcttgcttatgaactgtgtgtggtgttgtgcgactggtatatttgtcgcggagatatgtgttaagtgcgcgtgcgcgcctcttaaaaagcggttaccttgccaggtaaactgcgtgtaattactatgggcttagctgctctatgcctcttatctactgctgtgactggaacttgatggattaataagatctatgttgcgt</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0593700, RefSeq:Os02g0593700