Os02g0617500

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Revision as of 02:41, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0617500| Description = DEAD/DEAH box helicase, N-terminal domain containing protein| Version = NM_001053977.1 GI:115447324 GeneID:4329993| ...")
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Gene Name

Os02g0617500

Description

DEAD/DEAH box helicase, N-terminal domain containing protein

Version

NM_001053977.1 GI:115447324 GeneID:4329993

Length

6006 bp

Definition

Oryza sativa Japonica Group Os02g0617500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:25376202..25382207

Sequence Coding Region

25376563..25376651,25376897..25377080,25377193..25377354,25377456..25377693,25377802..25377838
,25377907..25377953,25378267..25378304,25378486..25378507,25378596..25378808
,25378930..25379086,25379170..25379221,25380076..25380147,25380256..25380305
,25380412..25380527,25380610..25380675,25380747..25380830,25381886..25382011
,25382090..25382207

Expression

GEO Profiles:Os02g0617500

Genome Context

<gbrowseImage1> name=NC_008395:25376202..25382207 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:25376202..25382207 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcgatgggacatctcggcgacccgtacgcgctgcgctccgtcgcggaccttcccccgccattccgctccgttttcgggttcaggtatttcaattcgttgcagagcgagtgcttccctgcatgcttcctctcggatgtaaacatggttatctctgcgcctactgggagtggcaaaaccgtgctgttcgagctctgcattctaaggcttctctcaaggttcctctcatcagagtggaggtttaatttgatcaaaggaaccctgaaaacaatctatattgctccaatgaaggcgttggtgcaggagaagttgcgtgactggaacatgaagctgggctcgttggggatcagttgcttggagatgactggtgacaatgaattctataacaccaaatccatacatgatgctgacttaattctcacaactcctgagaagtttgattctgtgagtcgtcatggaataagagatggtggactgggtttcttcagtgacattgctctggtccttattgatgaagttcatctcctcaacgatcctcgtggagctgccctagaagcaattgtcagtagaataaaaatgctttctcgacttggcacaatgaagattgctcctttggcaaatgttcgattcatagcagtttctgccactatccctaatattgaggatatagcggagtggcttgcagtaccgtctgaaggaataaaaagatttggagaagagatgaggccagtgaagttgacaaccaaggtttttggttatgctccagcaagaaatgacttcctgtttgagaggagactccaaagtttcattttcgatatactgatgcaacattcaagaggaaagtctgcacttgttttctgttctactagaaaaggcgcacaagaagcagcacagtgcctttcacaaactgcgagttctctaggctattcaaatccatttatgaaatcgatgcagcagtatgaacatctaaaggaggctgcactaacctgtagcgacaagcagttgcaggcttgtctcgtacatggagttggttatcacaacggtggtctttgcctaaaggataggagtgtcgttgagggacttttcctgaagggtgatattcaaattctttgcacgacgaatactttggcacatgggatcaacttacctgctcacacagtggtgataaagtcaacacaatttttcaacaaagagaagggtctgtatgtagaatatgagagatccatggttcttcagatgtgtggaagggctgggcgtccaccatttgatgatactggaacaattataatcatgacaagaagagagacagtgcatctatatgagaaccttctaaatggatgtgagatggtggagtctcagttacttccatgtgcggttgagcatctaaatgcagagattgttcagctgacggtgtctgatataactttggctattgagtggctcaagtgctcgtatttgtacatcaggataaagaagaatcctcagcattacggaattaagaaagaaattccacgtgaacttcttgaaaagcaaatgaaagatatatgtgttgagaagatccatgagctgggggagtatggtctaatttggacagatgaagatggtttccttctaaaaccattagaacctgggaggctgatgacaaaattctatctgaaatttgatactatgaagcttattgtcaaagcttctgcctgttgcactttggaagatctgttgcatatcatctgccactctgcagagattacttggatccaactacgacgaaatgagaagaagctccttaatgagataaatgctgacaaagagggaaggctttggttccatgttgttggtgcaaatgggaaaaggaagaagcgtattcaaac</cdnaseq>

Protein Sequence

<aaseq>MAAMGHLGDPYALRSVADLPPPFRSVFGFRYFNSLQSECFPACF LSDVNMVISAPTGSGKTVLFELCILRLLSRFLSSEWRFNLIKGTLKTIYIAPMKALVQ EKLRDWNMKLGSLGISCLEMTGDNEFYNTKSIHDADLILTTPEKFDSVSRHGIRDGGL GFFSDIALVLIDEVHLLNDPRGAALEAIVSRIKMLSRLGTMKIAPLANVRFIAVSATI PNIEDIAEWLAVPSEGIKRFGEEMRPVKLTTKVFGYAPARNDFLFERRLQSFIFDILM QHSRGKSALVFCSTRKGAQEAAQCLSQTASSLGYSNPFMKSMQQYEHLKEAALTCSDK QLQACLVHGVGYHNGGLCLKDRSVVEGLFLKGDIQILCTTNTLAHGINLPAHTVVIKS TQFFNKEKGLYVEYERSMVLQMCGRAGRPPFDDTGTIIIMTRRETVHLYENLLNGCEM VESQLLPCAVEHLNAEIVQLTVSDITLAIEWLKCSYLYIRIKKNPQHYGIKKEIPREL LEKQMKDICVEKIHELGEYGLIWTDEDGFLLKPLEPGRLMTKFYLKFDTMKLIVKASA CCTLEDLLHIICHSAEITWIQLRRNEKKLLNEINADKEGRLWFHVVGANGKRKKRIQT </aaseq>

Gene Sequence

<dnaseqindica>362..450#696..879#992..1153#1255..1492#1601..1637#1706..1752#2066..2103#2285..2306#2395..2607#2729..2885#2969..3020#3875..3946#4055..4104#4211..4326#4409..4474#4546..4629#5685..5810#5889..6006#gagacaccagaggcattatccgcgcgcggcttctcctgccattccttctcccaccttcgttccctcgcgaagcagccgctcctctctctcgccatctctccgactcctccggtccaaatcccccccccccccctccaaatccggttccaccaaccagcagtaagcaagcctctccctctccgcctctcgtcttcctacgctgcgcgcctccgcccgctcggttcgtccgcgagttcctgatcgtgatcgagccggttcggctccgatcgccggccgccgcgcgcaacgtgttcgacgaaattcctcggcggcggggctactcacccgcgatcgctcgatttttctgcagggaccgcacgcgatggcggcgatgggacatctcggcgacccgtacgcgctgcgctccgtcgcggaccttcccccgccattccgctccgttttcgggttcaggtgcgcgcgatgcatcatcgcatttgccaatatcaaactccgtgggccgcggttacggtgtttgcacggtgcatttctgtgtagttgtatgatcgcgctcacacattcagtagattgagattttgagtagccttgtagtcgtagtgcatcaggctaacaaaacacttctgtggaatgtggattacggtatgaaacgtggagtagctgggatggggttttacagtggcatcctgcgttccgtgcaggtatttcaattcgttgcagagcgagtgcttccctgcatgcttcctctcggatgtaaacatggttatctctgcgcctactgggagtggcaaaaccgtgctgttcgagctctgcattctaaggcttctctcaaggttcctctcatcagagtggaggtttaatttgatcaaaggaaccctgaaaacagtatgtgtcaagtaccttcttagcttttctatacactttagggattcactttgtatgttgaggatacgaatgtctaatttttaccatgtgcttaatttgaactgcctggtagatctatattgctccaatgaaggcgttggtgcaggagaagttgcgtgactggaacatgaagctgggctcgttggggatcagttgcttggagatgactggtgacaatgaattctataacaccaaatccatacatgatgctgacttaattctcacaactcctgaggtatatgtgactgcttgctttgctttacacggtgtaaaaagaggattggcacaactgctagccacttccttgttttttaaccaacatctttatgtttgcagaagtttgattctgtgagtcgtcatggaataagagatggtggactgggtttcttcagtgacattgctctggtccttattgatgaagttcatctcctcaacgatcctcgtggagctgccctagaagcaattgtcagtagaataaaaatgctttctcgacttggcacaatgaagattgctcctttggcaaatgttcgattcatagcagtttctgccactatccctaatattgaggatataggttggtaaactccaagcagtatggtcccaacatgtctctattttatttacattaccagattatgttctgttaaagattacttacgttttggctttgcttggatctcagcggagtggcttgcagtaccgtctgaaggaataaaaaggtgatgagaagcaacttcatcaaggataccaccactagaacttccttatctatatattccttttgcagatttggagaagagatgaggccagtgaagttgacaaccaaggtttttggtatggttcttgtttctcatcatattgcaaatatttggccaaagcgtaagaattaggacatttgatttacttattatgtcaaagtgagaagaaactgtgtcatgaatacctccatcctacacctgcaacttcctcacagaatcagtcatgaaatgatgttcgaatagatcattatttttgttttactccacaaaatcatgaactcttgaaaatgccactttgattacttagcatgtcctgacagccttacaacacttaaaccagcaatttatatgtttgacctaatctatatctgtttcactgtgctatttaggttatgctccagcaagaaatgacttcctgtttgagagggtatgcattttcttactatctgagaatgttccttctttaaaatgagaagggacaattagggcgtgtgctaagtcagatgtcttcttcatctccttgagctgtactactgtactgataatttgtgcataatcactgaatcgaatctgatatatttattttctttatttctttctacttgtagagactccaaagtttcattttcggtaagttacatctacctatctgtcaattgtactttaagttaagttagcagaatttcaggattcaaaataaaggataatattgatacagatatactgatgcaacattcaagaggaaagtctgcacttgttttctgttctactagaaaaggcgcacaagaagcagcacagtgcctttcacaaactgcgagttctctaggctattcaaatccatttatgaaatcgatgcagcagtatgaacatctaaaggaggctgcactaacctgtagcgacaagcagttgcaggcttgtctcgtacatggaggtcatgttgaatcttgttctcgacccacgataccttcacaacctacaatggtttcccatgttttgatgtgttgcctaacattacactgattggtgatgcatatcttatttcaacttttcagttggttatcacaacggtggtctttgcctaaaggataggagtgtcgttgagggacttttcctgaagggtgatattcaaattctttgcacgacgaatactttggcacatgggatcaacttacctgctcacacagtggtgataaagtcaacacaatttttgtgagttcattttaaatattcagtgattgagttagcctctatcatcttaatgatttttctctgatattcattctatttttcagcaacaaagagaagggtctgtatgtagaatatgagagatccatggttcttcaggtatacatactatcatgtctcatttccaccagtaaatacatcattgttgatatgcaataatattattcagttttgcttcatgaaagtatatgtgattttgttatctttgatgtgtagtcttaatgctactccctctgttccatattgtaaggtgtttcagtttgccctaagctaaacttctctaacttagaccaaatttatagaaaaatgcacccacatctataatatcaaaatagttgaattaaattcaccataaattatgtcttgataatgtatttatttggtattgtagatgttaaatatttttctataaacttggttaagtttatcggaaccaacatatacgctgtaaagtgcatgagaacataatctatcatgacctttcactctatacttatacaataactttttgcttgggcgggtgttatgttaagttggttatgacatacttattgccaaaagtttattattggaatagttatttatgaaaaaagaggtatatcagatgttctaaatttcatgctgcatataagttcaattgtttatcataaagcaaagttgattctgacatacttattgccacaacatcatatcgtttgatccttttctttgacgaaaacacatcatttgatcttatatctgcaaaacacttgaaattggacgtgcaaatttcatgccacatactagttcaattatttatagtgtaatgtgtaagatcatatttttttaattaaaactaacatgcatttaaagcattgtagttcagagcattttgtgattcaattataaaattatactatatggtttcctcttgcttctaacaatgcccctccccttatttgggtgatctacagatgtgtggaagggctgggcgtccaccatttgatgatactggaacaattataatcatgacaagaagagagacagtaaaggatctatattttccactcttgttaactctgagatattttgataccattattgggcaaaattggctctataggtcttttgtgctaacctgttatatcttgtaggtgcatctatatgagaaccttctaaatggatgtgagatggtggagtctcagtaagtgttttatgttcaactgaaaactaataatttcacctagttgactttgacatggactgcataccatttcaaacttctcgctgagtatagatgctatgaccaggttacttccatgtgcggttgagcatctaaatgcagagattgttcagctgacggtgtctgatataactttggctattgagtggctcaagtgctcgtatttgtacatcaggataaagaaggcatgggcaaattagtattattaaatctttaaatccatttcgcttaaatgcataaactgactttgacgaattgaattaccagaatcctcagcattacggaattaagaaagaaattccacgtgaacttcttgaaaagcaaatgaaaggtatatctttcttggattttgtagaattcatggttctatgggattttgatcgttatgaactcaatttacagatatatgtgttgagaagatccatgagctgggggagtatggtctaatttggacagatgaagatggtttccttctaaaaccattaggtaaattttctattttttttattaaaaaaatgatgatacaaattaatacaggtctattggtacaagcttacgctatacaaattgaagtttagtcttttgccaattccacgcttctgcaaaatagtttggctttagttggaaaacggtgtgtcctcactttgtggtacgccttgtgtgtttcccatctgcacacctacctacattgtggaaagtaggcttttgatggtgtgcccactagcattgcttaatatctgtggcttttgtgcaattcagttttgaggagagaatagaagcactaccatctatagtatccaccaacctgatccatagcaaatctttctattaatttgggctaaatacattacagttgttcctttgaactggattcgttgtatagtgcatgtcaaagtgtccaaaggattcaattccgaaccacatcattgtatctaaaatacatttaggtaataggcctagatttgactggggatggaaaatgagcattacactatggacaacatgcatttcttcaacctgtttcaagtacggagtttgagcttatgattggtgtggtgttgaggttttccgagttccgacctcagcaaccttaacaactaacatagaccagtgcttcaatatctgagctgtaacattgacagctattcagctagctccaatacatgcttgaatatctggggtgcgatcgttcagtcttatagttcaagtagataacatgaaatatctgtgtacgttttctgatcatgaccttaacagctgacactaaaatgtacaccgtcttctccaaatttaatggggttcgtttttgtaagaagttctgctggcaaacatggcaggtcctttgacggctgggtattcaacttgaagcctacttctgtcccataacttcaatagttttgttactattcttctagtgtttctcgttctgtttgcccatctgttcaactcccttgctacttagatgtctcctcagcattccagttactcagttcatttgcatattaaagatgactcttctgagatatatattttctactcagaacctgggaggctgatgacaaaattctatctgaaatttgatactatgaagcttattgtcaaagcttctgcctgttgcactttggaagatctgttgcatatcatctgccactctgcagagattacttgtaggtaactccagtttattctaattaataattaaatataataaattagcgatttgattttttttctgtaatatcaagggatccaactacgacgaaatgagaagaagctccttaatgagataaatgctgacaaagagggaaggctttggttccatgttgttggtgcaaatgggaaaaggaagaagcgtattcaaac</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0617500, RefSeq:Os02g0617500