Os02g0673100

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Revision as of 02:46, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0673100| Description = Protein of unknown function UPF0005 family protein| Version = NM_001054246.1 GI:115447862 GeneID:4330288| Length = 3...")
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Gene Name

Os02g0673100

Description

Protein of unknown function UPF0005 family protein

Version

NM_001054246.1 GI:115447862 GeneID:4330288

Length

3146 bp

Definition

Oryza sativa Japonica Group Os02g0673100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:28277708..28280853

Sequence Coding Region

28279027..28280003,28280161..28280301,28280403..28280751

Expression

GEO Profiles:Os02g0673100

Genome Context

<gbrowseImage1> name=NC_008395:28277708..28280853 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:28277708..28280853 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgccgccgcgagggaagcgcaggtgcagggcagtctggaatggcgggtgacggtgccggagggctcgtcggtgacggtggagcacgaggccggcgtcgccgagagggcgtgggcgtgggtggtgaggatgctggtcgcggtcagggcggcggtggccggcttcgccaggaaggtgtggaagatcggcgccgacgatccccggagagcggtgcacagcctcaaagtcggcctggctctcaccctcgtctccatcgtctactacaccaggcccgtgtacgacggcgtcggcggcaatgccatgtgggccgtcatgacggttgtcgtggtcttcgagtacaccgtcggtggatgcatgtacaagggattcaacagagccgtcgcgacggcgagcgccgggctgctcgcgctcggcgtgaactgggtggcggacaaatccggcgacaagctcgagccgttcatcctcagcggctccctgtttttactggctgcggcggccaccttctcgcggttcataccaacggtgaaggcgcggttcgactacggcgtgaccatcttcatcctgacgttcagcctcgtcgccgtgtcggggtaccgcgtcgaccagctgctggacctggcgcagcagcggatgtccaccatcggcatcggcatcgtcatctgcctcgccgtctgcgtcgtcatctggccggtgtgggccggccaggagctgcacctcctcacggtgcgcaacatggagaagctcgccggcgccgtcgagggctgcgtcgaggactacttcgcggcgaagcccgccgcggccaagtcggaggggtacaagtgcgtgctcaactccaaggcgtcggaggactcgcaggccaacctggcgcggtgggagccgccgcacgggcggttcggcttccgccacccgtacgcgcagtacaccaaggtgggcgccgcgatgcgccactgcgcgtactgcgtcgaggcgctcaacagctgcgtccgcgccgaggtccaggcgcccgagcacgtcaagcggctgctcggcgacgtgtgcacgcggctggcctcgcagtgcgcgcgggttctcagggaggcgtccacctcggtcgccgccatgaccagccccaagacgctggacttcgccgtggcggacatgaacacggccgtgcacgagcttcagggcgacctgcgcgcgctcccgcccgtcctggccttggaaccggcggcggagatgtcgctgatggacgcgatgccgctcttcaccgtggcgtcgctgctgatagagatatcggcgaggatcgagggcgtcgtcgacgccgtcgagacgctggccagcctcgccagcttcaagcaggtggaggatgatgacgacaagaagggacaaaccgagatgaaagtgcacccgctgaacgtgccggatgatcacgacgcgtcgacacatgaaagccagactacaacgaagcaccctgaacaggtctaa</cdnaseq>

Protein Sequence

<aaseq>MDAAAREAQVQGSLEWRVTVPEGSSVTVEHEAGVAERAWAWVVR MLVAVRAAVAGFARKVWKIGADDPRRAVHSLKVGLALTLVSIVYYTRPVYDGVGGNAM WAVMTVVVVFEYTVGGCMYKGFNRAVATASAGLLALGVNWVADKSGDKLEPFILSGSL FLLAAAATFSRFIPTVKARFDYGVTIFILTFSLVAVSGYRVDQLLDLAQQRMSTIGIG IVICLAVCVVIWPVWAGQELHLLTVRNMEKLAGAVEGCVEDYFAAKPAAAKSEGYKCV LNSKASEDSQANLARWEPPHGRFGFRHPYAQYTKVGAAMRHCAYCVEALNSCVRAEVQ APEHVKRLLGDVCTRLASQCARVLREASTSVAAMTSPKTLDFAVADMNTAVHELQGDL RALPPVLALEPAAEMSLMDAMPLFTVASLLIEISARIEGVVDAVETLASLASFKQVED DDDKKGQTEMKVHPLNVPDDHDASTHESQTTTKHPEQV</aaseq>

Gene Sequence

<dnaseqindica>851..1827#553..693#103..451#caaatttaggccgcattttcgttgcgtacatagagaatcgaggcttacaatagggacccatctggtgtgtgcagcggcgctcgtgtaccggtcgccatcagcatggacgccgccgcgagggaagcgcaggtgcagggcagtctggaatggcgggtgacggtgccggagggctcgtcggtgacggtggagcacgaggccggcgtcgccgagagggcgtgggcgtgggtggtgaggatgctggtcgcggtcagggcggcggtggccggcttcgccaggaaggtgtggaagatcggcgccgacgatccccggagagcggtgcacagcctcaaagtcggcctggctctcaccctcgtctccatcgtctactacaccaggcccgtgtacgacggcgtcggcggcaatgccatgtgggccgtcatgacggttgtcgtggtcttcgagtacaccgtcggtgagtagtagtacaacgtcgtgtggtgaattctgcatgctcttgcatgtcagtttgctgtgttcctcaccgtgtttttgtacactcgtgcgtgtgtgcaggtggatgcatgtacaagggattcaacagagccgtcgcgacggcgagcgccgggctgctcgcgctcggcgtgaactgggtggcggacaaatccggcgacaagctcgagccgttcatcctcagcggctccctgtttttactgggtacgtatttgataagcctacctccaccgtacgtagtgcccctgttttgttaggctcgtttcgtaagccgtgacaaagacttgcacagtcacatactacgtgcaacgctgacacccaagtaaaataatgcgtgcgtgcgtacgtgcatggtgaacagctgcggcggccaccttctcgcggttcataccaacggtgaaggcgcggttcgactacggcgtgaccatcttcatcctgacgttcagcctcgtcgccgtgtcggggtaccgcgtcgaccagctgctggacctggcgcagcagcggatgtccaccatcggcatcggcatcgtcatctgcctcgccgtctgcgtcgtcatctggccggtgtgggccggccaggagctgcacctcctcacggtgcgcaacatggagaagctcgccggcgccgtcgagggctgcgtcgaggactacttcgcggcgaagcccgccgcggccaagtcggaggggtacaagtgcgtgctcaactccaaggcgtcggaggactcgcaggccaacctggcgcggtgggagccgccgcacgggcggttcggcttccgccacccgtacgcgcagtacaccaaggtgggcgccgcgatgcgccactgcgcgtactgcgtcgaggcgctcaacagctgcgtccgcgccgaggtccaggcgcccgagcacgtcaagcggctgctcggcgacgtgtgcacgcggctggcctcgcagtgcgcgcgggttctcagggaggcgtccacctcggtcgccgccatgaccagccccaagacgctggacttcgccgtggcggacatgaacacggccgtgcacgagcttcagggcgacctgcgcgcgctcccgcccgtcctggccttggaaccggcggcggagatgtcgctgatggacgcgatgccgctcttcaccgtggcgtcgctgctgatagagatatcggcgaggatcgagggcgtcgtcgacgccgtcgagacgctggccagcctcgccagcttcaagcaggtggaggatgatgacgacaagaagggacaaaccgagatgaaagtgcacccgctgaacgtgccggatgatcacgacgcgtcgacacatgaaagccagactacaacgaagcaccctgaacaggtctaaactttaaaaacgtccatcaaatcaaaccgcacaaaatcaaccagcgggacgagtcagaccggaagaacacacgaatacatgattgaatctaaactggctgagccaccgctctttgctagcttcttctggtgattaacagaataactctatcgatttacagtggagagaatcttggcaacttcataccacggcttacacgacgaataaaaccggcttaccactgtcataaaagtcggcatgtatcgtcgcattcatgatgtactactaccttgtacatatattaacagaacattatttgatatttttacaggaacactgcaaggcatatgagctcagatgttcccctctccttaaacgccatgcactcgaaattcagagaaattttgagaacatcattatctcataaaaactcaatctactcaactgatttttattctttctcggtttataaaacgagttttatactttggttttctttttcttcttctttttttttttttgaaaactgtcggtagtagcagcagtacgtaccagaagcaggtaccgcttgtactctaccagaaaggacccaacatacgcacaagccgataaggtcgctttacagggaccgagggacaggccacgattaaacatttccaaatacactttcgtccgcgcgttgctgccattgcttttctttctctggcagtatgcacggtttttgctctgttgcagtacagcagcgccacgcactagggggattttgtgcgcatatattgcctcatgtttctgatcgcatcgctgcggatattgattttatcttggatttaatttgggcaatggacattggacagcccgtatggaacggaaaagttgcccatgtctgcctgatcaacggcggcgtgctgcaaacccatacaatgcactacctccctccctgcactgcacctgacgagatccagagaaaaccaggataggagttggcccagccggttcgtggctagtggagtacaaaatttgtgcactgagtttggatggaagaaataggtagatgatgataattcggtcacacacatgcatgcacatacaagtgtgaaatggcagcagggagcactagctcgaccgatcattgatcagtttgatgatctttagcccgacccgactaatgaagtgatgagtgataagtgatgacaatgagataatgttccgcggcatatccgctgggtaatgcataagcattagccaaagtggtttgcgtgtttataaagttctgacgatctctgaacattatttcgaggagatatatcgtgcattcacgcggggatcgatcttatactttc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0673100, RefSeq:Os02g0673100