Os02g0748100

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Revision as of 02:53, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0748100| Description = RINT-1/TIP-1 family protein| Version = NM_001054654.1 GI:115448678 GeneID:4330726| Length = 5294 bp| Definition = O...")
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Gene Name

Os02g0748100

Description

RINT-1/TIP-1 family protein

Version

NM_001054654.1 GI:115448678 GeneID:4330726

Length

5294 bp

Definition

Oryza sativa Japonica Group Os02g0748100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:32319559..32324852

Sequence Coding Region

32319671..32321536,32321611..32321708,32324280..32324384,32324476..32324755

Expression

GEO Profiles:Os02g0748100

Genome Context

<gbrowseImage1> name=NC_008395:32319559..32324852 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:32319559..32324852 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaagcggcggtgctcccgcgacccgcggacatcaccccggagctccgccgtttcctcgactcccgcttccgctcgcaagcagacctcgccgcggccgccgacgtcgaggccgagatccgcgggcgctacgcggagctcgaggcctcggtatccgacctctccgtccgcctagcggccgccgccgcagcttactcctccagctgcagcgccgccggcaccgctctgagtaatgtccgcggctgcctcgctgccctgaatgcctccacctctgaaccaggggtcacagaagcggtggaggttgggagcgaggagatgttgtttgagcaactttcttctctggccaaagaggtggcgagagtggagttggtcagggattacgccgaaacggcgctaaagcttgacagttttgtcggcgacgtagaagatgctgtttcatcttctgtgaccggaaaacttaaatctcgtgcagaaagttcactgaaaacatatcatgttcctattggatatcttaaaacaatagaagatattttatcttcagtcacaaagaccagaccacaatggactcgccttgtttctgcagtggatcacagagttgaccgatctttggctctactaagaccacaagcaattgtcgatcatcgagctcttttggcatcccttggctggcctccatcactttctggaacaaatttttctagtattaattctgggaaaccatcagagattgtgaaccccttattttcaatgaagggtgacctgaaaagcaagtattctgagagctttctttcgctatgcagtttgcaggaattgcaaaaacgtagaaaagctcgacagctagaagggcacattgtcaacaatcaactacgtcaaccattatgggtaattgaagagttagtaaatccaatagctgctgccgcacaacgccatttctccaaatgggttgaaaagcctgagtttgtttttgctcttgcttataagataactagagactttgtagattccatggatgagatattacagccccttgtggataaagctaaccttgtagggtatagttgcagagaagagtggatttctggaatggtcatcacattgtcgacatacttggtgaaagagatatttcctaagcatattgaacttcttcaggaaattagctcggctgatgctagcagcaaacaatctcaagctagagtctcatggcttaatcttattgacctgatgatatctttcgacaagcaaacccaagctttgatctcaagttcaggactcctactttcggtgaaggatgatgataattggcagaggatctcggttctctccgtcttctgtgatcggccagactggcttgaaatatgggcagagattgagagacaggatactcatgataagctgagattatcaatggagaatgagaaaaactggaatacaaggtttcaaggaacagtgcttgaatatggttcagatgactataagtctccagcaattaccggtgtaatccaaaagggcctgtccttgctaatagatcgtgctcggcccattccaaatatagcacttagagcagaattcattaagatttctacttcacctttattatcagagttccttggctggatgcttcaaaggtgccaagaagcagagggattaacagctctggcagatgataatgctcttctcaaggtatcacagtccattaatgcagctcgataccttgagtccacattgacagaatggtgcaatgatgtattctttcttgagatggaaaatatagatggccgtagcgaatgtatcttccaagtggagataaatcaactgaaagattttagagtacaatggactgaaaagatttctaccgtcattttaagggattttgatgcccggtcaagggattatctgaaaaataaaaggcagtggcaggagaaatcagaagggttaacattatccagggcattcgtagaatgtttagactacatgcaaggacggatagctaagctggaagatggtctaaatgtcctggattttgtgactgtgtggagaactgtggcaagtggagtagaccagctgctcttttctggaattttcagtggcagcacaaagtttagtaatggcggggtggaaagacttcatggtgatctgagtatattgtttgctgctttttctgcgtggtgtatgaggcctgaaggcttctttccaagactgtctgagggattgaagttattggatattgatgagaagcagctaagagatggagcttgtacagataacaatcggctgagggagtatggtataaggcgtttgacggctgctgaggttgagaagataataaaaaacagaatctatgagtcgtaa</cdnaseq>

Protein Sequence

<aaseq>MEAAVLPRPADITPELRRFLDSRFRSQADLAAAADVEAEIRGRY AELEASVSDLSVRLAAAAAAYSSSCSAAGTALSNVRGCLAALNASTSEPGVTEAVEVG SEEMLFEQLSSLAKEVARVELVRDYAETALKLDSFVGDVEDAVSSSVTGKLKSRAESS LKTYHVPIGYLKTIEDILSSVTKTRPQWTRLVSAVDHRVDRSLALLRPQAIVDHRALL ASLGWPPSLSGTNFSSINSGKPSEIVNPLFSMKGDLKSKYSESFLSLCSLQELQKRRK ARQLEGHIVNNQLRQPLWVIEELVNPIAAAAQRHFSKWVEKPEFVFALAYKITRDFVD SMDEILQPLVDKANLVGYSCREEWISGMVITLSTYLVKEIFPKHIELLQEISSADASS KQSQARVSWLNLIDLMISFDKQTQALISSSGLLLSVKDDDNWQRISVLSVFCDRPDWL EIWAEIERQDTHDKLRLSMENEKNWNTRFQGTVLEYGSDDYKSPAITGVIQKGLSLLI DRARPIPNIALRAEFIKISTSPLLSEFLGWMLQRCQEAEGLTALADDNALLKVSQSIN AARYLESTLTEWCNDVFFLEMENIDGRSECIFQVEINQLKDFRVQWTEKISTVILRDF DARSRDYLKNKRQWQEKSEGLTLSRAFVECLDYMQGRIAKLEDGLNVLDFVTVWRTVA SGVDQLLFSGIFSGSTKFSNGGVERLHGDLSILFAAFSAWCMRPEGFFPRLSEGLKLL DIDEKQLRDGACTDNNRLREYGIRRLTAAEVEKIIKNRIYES</aaseq>

Gene Sequence

<dnaseqindica>3317..5182#3145..3242#469..573#98..377#ccttgcaagtcgtcttcgtcttcctccttgccatctcgcccaatctcgagattctccgctgctattatccccgatccaaaccctaatcgatcccgccatggaagcggcggtgctcccgcgacccgcggacatcaccccggagctccgccgtttcctcgactcccgcttccgctcgcaagcagacctcgccgcggccgccgacgtcgaggccgagatccgcgggcgctacgcggagctcgaggcctcggtatccgacctctccgtccgcctagcggccgccgccgcagcttactcctccagctgcagcgccgccggcaccgctctgagtaatgtccgcggctgcctcgctgccctgaatgcctccacctctgaaccaggtatcacagataaacacttgttactgatttcttacatactgttcttcgcgagttgatttttgctcgaatttttgattcattgttgttttaggggtcacagaagcggtggaggttgggagcgaggagatgttgtttgagcaactttcttctctggccaaagaggtggcgagagtggagttggtcagggattacgccggtgagtgtgaaattagtttcctcggaccttgtatccgtgctttgtttgatatttgatatttcggatgattaaaagctgacaatgagatcactcctatgacaactcttaacgctgtcaactcttttcctcgtatacttttgtttgtttagtttagccataatgtgttgcgaaatactgatgcacgatctactgcttgcttaagaaatttagattggataattttattaggcatgtagaaaatgacgcttacgaatttgaaaccgaccaatgttttatcatgtccattatattgatacgatatgatgcctttacttagaaatgtactgtactaacatttgatacaatggggcatggattgcttaaaattggagcagactgggtgttggtgatataggttttggtgactggttaataattggtcttggtgggtacagattgccaatacagttgggtaggacgatgatatctgttctggcactcacacgattaatcaacaactgggcttggcaaccctagaaagggagtgtcattttgattaggaataaatactcccctgaacttttaccgagtccttctagcaccctgaactattaatcggatatttagctcctgaacctgttaatacggtccactcaacctcctaagcccttatttggataggctgaaatcactgccgcatccacatgtctggctggaattttgaaatcttggctcacacctgtggatgggccaggatcgaggcacacttaaaagaggcctaagctgttttgcaggcgggtttggccacatggcatgttgattggacgtatttgctacatcatcttgctgattggaccattgatcagatatgaggaggtaaatttagctcaccgtaaatctccttcccatctcttactcaatcagtggtctaatcagcaaagtgatgcaggagatacctccaactagcattctacatagccaaaccgccttgcaaaactctgggtgttacacagataaaattaacaagttctgggggcttaaatacccagatttattgttcagggtgctagccagactcttggacaaagtttaaatcggtatttgtgctttttcatttttattatatggatagttgtccaatttaactggaaattatggggatactattttttttgagatattatttcatatatgccctttgtctacaactgcaattgcgaatgtagaatcaaactccaacaatagtgctgaaaccagaacatccattttgttctgctacctcacccatccaatatgagcatgggattagggtggttggacatattaactagatttagtctgtaaaaactaagtaaattcaataaaactttgaataaagacaaaacaataccgaggataaaataatgatctgattagatttgaatgctagagctaggcaaatatgatggaacatggaaagttccaacaaacaattgagggtgtgatttaatttgttactaacaaagcaaacatctggccacctcagagtttactctggaaacaccttgattattctaagcatatgggttttctcctctccagtgttgtgcgaaaatgcgatgcaaggagtttcataaggttgatctgctggtcagatggtattagttcttgttcttaattgcatcactgttatatgttaggtgtcacgattattctatcttgatggatgtttcaatttaactagtattgtagggaaaaaggaagcaccataatttgttcctcaagttggtttgctatctttagtttaatactccctccgttttttaatagatgccaccgttgacttttgaacacatgtttgaccatttattttattcaaaaattttatgcaaatgtataaggtataaatcatgcttaaagtactttgagtgttaaaacaactcaacaaaataaattataattacataaattttttgaataaaacgaatggtcaaacgtgtgacaaaaagtcaacgacgtcatctatttaaaaaacgggggtagtatctattattttgttagtcctgatactgtgctctttgactaagtttcctagtgtgcattgattttttttatattatcctgcggacatctcactgatatatcattgcctgatacctgcatattttttttttgacaaagtttcttagaatacatagttctacccattatccataaaaaccatcatccgattcattctttaatttaaccgaagcaaacaacgtggaattttaattttctactcccggaattgcattgttagagctgagccaggatttcttggtttctgaaattgagaaacttgtgaaatgactcagttcagaaaaaaggaggaggcttttatggactagcatgggaacgataaatttgagtgaaaactaattgaatgaattatcgtgggataccccaactattgtccttgactttagatacttaacataatttaagtttatattttctcgtccttgtcttggcaattggcattgtacttttcttcaattatgttgctcaagcatttgctctatacttaacttcaacactggtggttttttaacagtaggttgtcttatacagaaacggcgctaaagcttgacagttttgtcggcgacgtagaagatgctgtttcatcttctgtgaccggaaaacttaaatctcgtgcagaaagttcactggtacgaatattgccattttagtatgggaaaaccaacatgtcaactgctaagtttggatttcgttttttctccagaaaacatatcatgttcctattggatatcttaaaacaatagaagatattttatcttcagtcacaaagaccagaccacaatggactcgccttgtttctgcagtggatcacagagttgaccgatctttggctctactaagaccacaagcaattgtcgatcatcgagctcttttggcatcccttggctggcctccatcactttctggaacaaatttttctagtattaattctgggaaaccatcagagattgtgaaccccttattttcaatgaagggtgacctgaaaagcaagtattctgagagctttctttcgctatgcagtttgcaggaattgcaaaaacgtagaaaagctcgacagctagaagggcacattgtcaacaatcaactacgtcaaccattatgggtaattgaagagttagtaaatccaatagctgctgccgcacaacgccatttctccaaatgggttgaaaagcctgagtttgtttttgctcttgcttataagataactagagactttgtagattccatggatgagatattacagccccttgtggataaagctaaccttgtagggtatagttgcagagaagagtggatttctggaatggtcatcacattgtcgacatacttggtgaaagagatatttcctaagcatattgaacttcttcaggaaattagctcggctgatgctagcagcaaacaatctcaagctagagtctcatggcttaatcttattgacctgatgatatctttcgacaagcaaacccaagctttgatctcaagttcaggactcctactttcggtgaaggatgatgataattggcagaggatctcggttctctccgtcttctgtgatcggccagactggcttgaaatatgggcagagattgagagacaggatactcatgataagctgagattatcaatggagaatgagaaaaactggaatacaaggtttcaaggaacagtgcttgaatatggttcagatgactataagtctccagcaattaccggtgtaatccaaaagggcctgtccttgctaatagatcgtgctcggcccattccaaatatagcacttagagcagaattcattaagatttctacttcacctttattatcagagttccttggctggatgcttcaaaggtgccaagaagcagagggattaacagctctggcagatgataatgctcttctcaaggtatcacagtccattaatgcagctcgataccttgagtccacattgacagaatggtgcaatgatgtattctttcttgagatggaaaatatagatggccgtagcgaatgtatcttccaagtggagataaatcaactgaaagattttagagtacaatggactgaaaagatttctaccgtcattttaagggattttgatgcccggtcaagggattatctgaaaaataaaaggcagtggcaggagaaatcagaagggttaacattatccagggcattcgtagaatgtttagactacatgcaaggacggatagctaagctggaagatggtctaaatgtcctggattttgtgactgtgtggagaactgtggcaagtggagtagaccagctgctcttttctggaattttcagtggcagcacaaagtttagtaatggcggggtggaaagacttcatggtgatctgagtatattgtttgctgctttttctgcgtggtgtatgaggcctgaaggcttctttccaagactgtctgagggattgaagttattggatattgatgagaagcagctaagagatggagcttgtacagataacaatcggctgagggagtatggtataaggcgtttgacggctgctgaggttgagaagataataaaaaacagaatctatgagtcgtaatatatataaggactaaggaataacagatagcagggttgaagttcgaaatgagttgtgaaaaaccatgatcacttcgtacggttttatttcatacaaattttattactgtgct</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0748100, RefSeq:Os02g0748100