Os02g0798700

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Revision as of 02:58, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0798700| Description = Neurochondrin family protein| Version = NM_001054939.1 GI:115449248 GeneID:4331025| Length = 6665 bp| Definition = ...")
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Gene Name

Os02g0798700

Description

Neurochondrin family protein

Version

NM_001054939.1 GI:115449248 GeneID:4331025

Length

6665 bp

Definition

Oryza sativa Japonica Group Os02g0798700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:34887418..34894082

Sequence Coding Region

34887530..34887532,34887617..34887833,34887926..34888082,34888303..34888439,34888755..34888858
,34888961..34889056,34889186..34889276,34889752..34889872,34889947..34890143
,34890973..34891073,34891146..34891201,34892057..34892146,34892233..34892332
,34892562..34892663,34892740..34892809,34893064..34893218,34893312..34893363
,34893491..34893561

Expression

GEO Profiles:Os02g0798700

Genome Context

<gbrowseImage1> name=NC_008395:34887418..34894082 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:34887418..34894082 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggattccaccccggctcctgccgccgccgccgcggagacgccgaccaccgccccggcgttcgaggaatgcctccgcctcctccgcggggagcgcgacgagcagaagctggcgggcctcctcgtcgccgccaacctctgccgcgccggcgacgccgcctccgtcgtcgaggtgtaccgcgccgtcgggccccggttcctccgccgcctcctcaacaccgggctggggaaagtggagggcggcaaggaggaggacagggaggcgtacctgcgtctctcggtgacggtgctttccgggcttgctcgattcccagaggttgccgccgacgagggggtcgtctccactgtgcccctcatcgccgagatcgtctccaaatcgtctgatctggcaattactgaagaatgttttgagctcctgtctcttattgcaatagcttcagatggtggggcgcatacgttttgtgaacctggagtgatggatatgctcttcctccaaatctcaaacttcccagatggttcaaggtgcttagagcttgccattcatctaatgcagctacttgttcataaaatcagaatagacaacatgaccgtggagaaactgcaaggcatgacaagcatggtgacctcacttgctaggctttttgctgttcttcatactacagttaaatttgaagcgctgcatatgcttaccgcccttctatcccaaaaggaatctccgcttcatgacgctttgagatcagtaccttccatgatttggaaatgtcaaattcgagttgggataacggccgttctccaaaaccgtgttgtatcttctgaaaagttgcaagctcttcttttggcggagtgcatgatgtctatacttggtgagaattggctgtcagaagaatacaaagtccctgatgaccagaatatgatgcctgttgataaatttgtattgcttgtcctagaatctgcaagaatcgaagtttctgtccttctaaatgagcttgcttatttgaagtatgaatcttcaaaaaattcccagagagatgatgccatcagtcagaaagagagaaacctggctatattattttcactaatagaaagaataataaaaatgatatcaaatgccagtagtggggaaggtgctgtatgtcagaccatccgtgagagcaccatcatgaaagcaattacaggattaaatgagacagttggcttagttttagactttctgcaggacgcaaaggatcatgggcaaaggaaaggcgatgatcttttggcggctgtgagaatagtaggaagttatctggcagaggcaccatatgcctgcaaggagaagattagacatctgctggaatttatcttctctgttgaagggcaagatgaatcaagctcattccattctatttgttttatgcttcccatgctatcacaaataacaatggaggctgatggatgtagaattttggcatcatttggaggctataaaatggttatagactgccttattaaaatgatcgaacagaatggaatgatgattgacactggtaacatgtttttagcatgtgataccatcataaactttttgtcaaatatgaaaaatgctcatattcaaatggggtcttgttttgtcggccttctaaaagcacttgtttcatggactggaaccgccgatgattcatcagttatcataacagcctcctgcttatgcacgttggtgttggacttaacaacagaagagtttttattgagcagctctgattttgattccaagacacttgagaagttgtcaaagctcattgccagaagtttgcatcagggcattcctgacgacgacatagaacaatccaaccaaaagcaaatcatactatcaggttacaggaggtggtctgatagatatccacgtgttaaaaacatcctgcagcagcatgtttctgtgtga</cdnaseq>

Protein Sequence

<aaseq>MDSTPAPAAAAAETPTTAPAFEECLRLLRGERDEQKLAGLLVAA NLCRAGDAASVVEVYRAVGPRFLRRLLNTGLGKVEGGKEEDREAYLRLSVTVLSGLAR FPEVAADEGVVSTVPLIAEIVSKSSDLAITEECFELLSLIAIASDGGAHTFCEPGVMD MLFLQISNFPDGSRCLELAIHLMQLLVHKIRIDNMTVEKLQGMTSMVTSLARLFAVLH TTVKFEALHMLTALLSQKESPLHDALRSVPSMIWKCQIRVGITAVLQNRVVSSEKLQA LLLAECMMSILGENWLSEEYKVPDDQNMMPVDKFVLLVLESARIEVSVLLNELAYLKY ESSKNSQRDDAISQKERNLAILFSLIERIIKMISNASSGEGAVCQTIRESTIMKAITG LNETVGLVLDFLQDAKDHGQRKGDDLLAAVRIVGSYLAEAPYACKEKIRHLLEFIFSV EGQDESSSFHSICFMLPMLSQITMEADGCRILASFGGYKMVIDCLIKMIEQNGMMIDT GNMFLACDTIINFLSNMKNAHIQMGSCFVGLLKALVSWTGTADDSSVIITASCLCTLV LDLTTEEFLLSSSDFDSKTLEKLSKLIARSLHQGIPDDDIEQSNQKQIILSGYRRWSD RYPRVKNILQQHVSV</aaseq>

Gene Sequence

<dnaseqindica>113..115#200..416#509..665#886..1022#1338..1441#1544..1639#1769..1859#2335..2455#2530..2726#3556..3656#3729..3784#4640..4729#4816..4915#5145..5246#5323..5392#5647..5801#5895..5946#6074..6144#gggaggtttccattcaagaccagtgctcgctgcgagtcccgacgcggcggcggcggcggagccgctctcctcacccgctcgcaatcgctgctccgttcgccgcctcacatccatggtgctcacctgcgcctcctcctccaaaccctaaccctcccgtttcctcgccttctcacctcgcctctgcattcaatccctgcaggattccaccccggctcctgccgccgccgccgcggagacgccgaccaccgccccggcgttcgaggaatgcctccgcctcctccgcggggagcgcgacgagcagaagctggcgggcctcctcgtcgccgccaacctctgccgcgccggcgacgccgcctccgtcgtcgaggtgtaccgcgccgtcgggccccggttcctccgccgcctcctcaacaccggtagaattgccgcgcctcgtgggagcgcttgtctccagtgtaggcatggttcctcttcgtcactgggtttttgttcgcgttgttggatgcagggctggggaaagtggagggcggcaaggaggaggacagggaggcgtacctgcgtctctcggtgacggtgctttccgggcttgctcgattcccagaggttgccgccgacgagggggtcgtctccactgtgcccctcatcgccgagatcgtctccaaatcgtaagtaaattcgctatctaccacgttctgattgatactcaggctaggtaaaaccagtgtagttgaagcagcagacgttgcaacattttgcaattgtgcaagtgaacaatgctacctaactgagtatgcttgcttgagtagtcctccgattctgtatttcagttgggatgcttgctctgcataactcatttgcttatgactctacccaactcgtgtgcaggtctgatctggcaattactgaagaatgttttgagctcctgtctcttattgcaatagcttcagatggtggggcgcatacgttttgtgaacctggagtgatggatatgctcttcctccaaatctcaaacttcccagatggtattagttttaacttgccagtttcctttgagaaatgggaatagattcaagttccagcactcacatttcaaatgcgcacttggatggctgctgggtacttttaccttttaagaattattattgaatatgtaacctagttcacatttggtactcacaccgtggttacatgagttagtccatggacaggcaaaaaactatcttttagtcctgaagttaattggtgtgtgcttttaggtagtagtagttttgaatgatattgtattttactgagttgaattgaattttatacagttatttgattgtatctgttcataggttcaaggtgcttagagcttgccattcatctaatgcagctacttgttcataaaatcagaatagacaacatgaccgtggagaaactgcaaggcatgacaagcatggtatgaattacatactggaatcttttgcgtgaatcttcctatgcttcacatgtttagcagtcctaacgtgatggcttggcctgcaatttcatttcaattcaggtgacctcacttgctaggctttttgctgttcttcatactacagttaaatttgaagcgctgcatatgcttaccgcccttctatcccaaaaggaatctgtaagaattacctcctccctttctgtttcatctaaagtgtgggattgtgttcccttctgaatgatgtttaatgattcctttctagtggcttttgtttaactccttcctttatttttgttgtccaacaagccgcttcatgacgctttgagatcagtaccttccatgatttggaaatgtcaaattcgagttgggataacggccgttctccaaaaccgtgttggtatgtctgcttcatgtttttaacaatatttgtttcctgtgtactgtgaagttgtaattcgttggtctacactatcaatttaagaatctgctgcattcagcaaggctgaaagtgcttaatgtgccactttacactagctattctgtccctatttgcagtactagtctataacttcagataattttaggcctttctcttttcttaaaattgtttctttagtttcagttgctacctttattataggagagtatcatttcgtttcttgtatttagctcgatatttttctaaacttgcaagaaagtttatgtagatttctttgagcaacagtactgtagtatatggtaattcgatggagttattgatcatactctgaaaggattcctttcagaggatataagaacggcactttaccagtgttagtatttactttcccttttgatatggttcatgacactgatttatttgcactgatcagtatcttctgaaaagttgcaagctcttcttttggcggagtgcatgatgtctatacttggtgagaattggctgtcagaagaatacaaagtccctgatgaccagaatatgatgcctgttgataagtgagtttgacattatcacctgtatcctgtttgatatacattcttatacgcataacaatttgtgatttgtgcagatttgtattgcttgtcctagaatctgcaagaatcgaagtttctgtccttctaaatgagcttgcttatttgaagtatgaatcttcaaaaaattcccagagagatgatgccatcagtcagaaagagagaaacctggctatattattttcactaatagaaagaataataaaaatgatatcaaatgccagtagtggggaaggtatgtctaccttattattgactcttttttgtttgcaaatatctagatcgtaggtgatgtattgtagttagtgatgcagtcttctgatcctaccctctatttatgcacccttaatttcttaaacgagtattctgtgtttctatgccttaacttagtgagcatgctgatatgcatgtgttgccacatgttaatggccaaatactgttggatccaggcatgattaagttagatagcttgaacaacttcaatagcaacgtggttgtatgttccttaattccttctttttattaaattccagtgttttgttctgttgtaatgtttctcctgaactgtactgacattgacagttttggatggtaacatctgaactttgaatatttaggctcaaccaacactgctgttgtaatatgttgacatttcttattctctaatttctacctttctgtccatttcgcctatcctacagtttaagccatgactaatagcagagctcctaatcctatatacttacatagttcatcctcactaagtgtagttaatgctatttctttcttctgtcattaagccacatcaccccaattatttctagcctttggatgatatagatctatggtgcaaattgtctcttctttcttctctcataacaccaggcaatctcaattatttttaggctcaaaattcataagtatcaatttgttttagtttaataatcatattgcatcttatttgtacatattatgcaacttaatttcccgcagcaatgcggtgtggtattcatctagtaattataacaaatattttaaataaaacaaattggcactgcatgcaggtgctgtatgtcagaccatccgtgagagcaccatcatgaaagcaattacaggattaaatgagacagttggcttagttttagactttctgcaggacgcaaaggtacatatatgatcagccagttatgaacttatgatagtatcgtaagatctcttacatgatgaagcattgcaggatcatgggcaaaggaaaggcgatgatcttttggcggctgtgagaatagtaggaaggtgcgcttctttgcttattagtaattgttagactgaccatgtggatccatctctgcattctattttcttaaatcttaagaattgctccttagtgttagagatatatggtacttcctccgtttcacaatgtaagtcattttagcatttcccacattcatattagtgttaatgaatctagatagatatatatgtctagattcattaacattaatatgaatgtggagaatgctagaatgacttacattgtgaaacggagggagtagttaataggaatattaggataggatttatttgtttagagtccgtccttatctctatccatgtaactctatatctaccggcccttgaggctcaatacaattgaccacatacgtgtcaacatatatataccggcccttgaggctcaatacaattggccacatactatagcagtactgttgcactgaattaagagtcttataaaaggacatgtacacctcctaagttcgcaagcttttcagcaacacaaaatcagagttttagcttgactagtgtgtgtagttcagaagtgatcctaccaacaatacgcagtacacctctcttcctatgctattcaacactgagataacaattgaacatggttagtattataatggcccttagcttccacttttgatgattttacttactttacatgacagttaattgaattttgacaccgtgaaacaaattcattcgcaatttggccactccatatgcttttatgcacatcttgtacatatgctgttaaccccaaatggatctttaatagtgaaatttcaagaacaaactcctgtagaatattcgttttccttaatttgaaaatatctattgcagttatctggcagaggcaccatatgcctgcaaggagaagattagacatctgctggaatttatcttctctgttgaagggcaagatgaatcaaggtagcttgtcctctattttgtgctcatgtgtagagatctttccgtaatgtgacaatgttgatataaagttctattcttgtgtacagctcattccattctatttgttttatgcttcccatgctatcacaaataacaatggaggctgatggatgtagaattttggcatcatttggaggctataaaatggtaagtaagcttattttgcattacacttcagaaaggttctaaatgtagaattccatggcataaatactttagctgcctgtaggttccaatcagttttgacataggtttacttttgaaatgaatccatggtattgcttaatcttgtcaactactagaagagattttgcggtagtatacaagcctatttttccccttagttatggactgatcttgctatgatgttttacaggttatagactgccttattaaaatgatcgaacagaatggaatgatgattgacactggtaacatgtttttagcatgtgataccatcataaactttttgtcaaatgtaagtggttctgttcttgaaacagactagtttgattatcatgagaaacattaatggttttctggtacttctgtagatgaaaaatgctcatattcaaatggggtcttgttttgtcggccttctaaaagcacttgtttcatggactggtatgttctgctccttatttatatgaaccaattgacctagatatcagcatcatatatgcagtgttctctctagaatcctagttgcttgttggaaaataataatgactgcatgttccccatgcttagatatggaattattgtttttctataccacttgtatagtatgatatctctggaaccaacaaacagattacatgctaattgatgcatgtcatgctctgatcaatagctaccgcttttgttattgatcataggaaccgccgatgattcatcagttatcataacagcctcctgcttatgcacgttggtgttggacttaacaacagaagagtttttattgagcagctctgattttgattccaagacacttgagaagttgtcaaagctcattgccagaagtttgcatcaggtaactaatgagaacatcctttttatggaattattttctctatgatgcaacctcttgccagtcctgacgatggttttttatattctgctgcagggcattcctgacgacgacatagaacaatccaaccaaaagcaaatcatactatcaggcaaatactatactctttttaacataaactggaaaaaagaaaagaagagctctcatttgatttgctatcggtgtgaacttagatattagtattatctaacttcattatttgccgtactggtttgcaggttacaggaggtggtctgatagatatccacgtgttaaaaacatcctgcagcagcatgtttctgtgtgattttctgcttatgattgccgtcaatctcttgtcaaaagagaacccacccccccagatacaaaccttaagttaaagtatacccgtgcctgatattcttcaatcttaaggtgggtcctttcgattcacaaactagccattctcgcacattatttgcatgtgagatgctgctgatgtgcccttatttgtttaggggtttgccaaatgccaatgcattctttgtgggtgcaagcaattataggttacggtagttcctccatgtaacagctagatagtactacacctaaacggatgagcaagatgccattgtatacagtgtcgcgttgcttggcagtgcaccatattggaaggagtagatgcgaagggaaaatgtacatattcaccttttgtctgttgtatcgacgagtattttttgtaatggaaggctttaatgtagtgcaaataactcgcttgaatttgtttcgcttgtgcgcacttaatatgcaactaatagttgatgagtatttgtgcattttcgaaagatt</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0798700, RefSeq:Os02g0798700