Os02g0817000

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Revision as of 03:00, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os02g0817000| Description = Myb, DNA-binding domain containing protein| Version = NM_001055053.1 GI:115449648 GeneID:4331145| Length = 5307 bp| ...")
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Gene Name

Os02g0817000

Description

Myb, DNA-binding domain containing protein

Version

NM_001055053.1 GI:115449648 GeneID:4331145

Length

5307 bp

Definition

Oryza sativa Japonica Group Os02g0817000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:35927944..35933250

Sequence Coding Region

35929010..35929183,35929622..35930170,35930652..35930716,35930785..35931325,35931689..35932978

Expression

GEO Profiles:Os02g0817000

Genome Context

<gbrowseImage1> name=NC_008395:35927944..35933250 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:35927944..35933250 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcagcaagttcatgataacctacaagaggaagcgtgttacatcacatgtctatacagctgatggcaccaatctcaagtcttctggtgcttccagtagtgttcctgtcagcagtttatccccaaaatatggggttggtgccgataataacatgttagaggaagataatttttcgacctctacaaagcaacaggatgtatttgattcaagggagcaagtcatcaaggaagaatcacctaaacaaagtgcaaatgcaccaggcaaagaacgagcggaacttaagtcacgtgaatcattatctcaaaaggaacagcctgagatatgttctactcatactgcaataggagacgcatgtgagaataaattagaatgcatagatggcacacataatcaaagtcttgtttccagttgtgtgcatgctgacaggacaactaatcaggcagaagattctagtgcctctgtttctgtgggagtaaattctcatcagcagccgaataattctaccaggcctagccaatctaagagtagatttagtcctatgcttacatttcataggcgagttaaaaacaaaataggtttggaagagcctgcagcaggaagttgttcaagagataatgacaaacattgctcaaaactaagttgcaacccaccaagttcgccactggatgctatacccttgtgtagacaaactgctggcagttctttggatgttgaagataaggttactatagcgggaacaagcactggacaatctgtaattgttgaccacttgcttgaacaaaaaagttcacacattccgaaatcgtcggtacatcatatggttccctcgcagcctgctaaagatgcaaaccaaagttcaatcccagaagaaggtacaccagtatctgagttcactagggtgctagaaaccagtgagtcagatgcaagagtggaggactcaaacagaacaccagtagacgctattgaagtaccaaaagttattgaagtgaagagggatgaacatggtaatggacagactaattgtctacagtcaccaaggaaaaatataaatgttaatcttctgaaaccaacaaatagatctgaggcagctgatcttctggagtctcaagattcaacaaaaaatattccaattattgtcttggacgatgatagtgatgagaggggcaaagagcaggaaaaatcagaggtccttgatcaattaatccaggagaaaaataaaggtagattttctttggggcagatcaacctaaatctaaattgtgctgaattaccacaagagaggcttctcagtttggatgagacatcggtgtacaaactaaaagatcaggatcaatgtgttcatgaacgaaagcaaatgtcccatccagttgaaaggttgttttttacaaaggagaaggatgccatgcacggtaaaaaacatcatgaagaaacctcaaccatgcatagctcgtactcaaatttatttgatccagccccatcatcgtcgtggattactgggaatttcaaggaaccaagtgtcatgccatcagaactgaagttcagaatattggataaggctcctgaattcaatttagatctcaaattggatagtttcccagacagtagtgtattagcccttaggcacgataagttatttcgtggaggcacctccagtggatcccattttctgacagaaaggcttgggacatactcctacaaaaggcactcttccccgtggtcagaagaagaattggattttctttggattggagttaggaggtatgggacaaataactggaatgcaatgttgagggatagacggttacggttttctaactcaagaaatgccgaggatcttgctaagcaatgggacaaggaacaaagaaatcttctaggtgtggatttccttcaatcactcagatcctctgctcgaggtcctccaccgccttcacatataccagaagattacgttggaagcagttcttggactggatgctcaaaatctccatttctttctgctccaacagacctttcattgggtgacatgtaccttcgaagcgcccgtacttcagagagagggcagcatcatttatcaaacctgggcatgttaaacctacatgcaaccgacaatgtaccaagaaatttgtctctgggaggtttccctgttgcttcctccccatatgggagaagttctagcaagcgtaggagggcgtccaagcttcccaagtcatactatgacaacaaggcagtttggtgccaagatccatcagagagggtggctcagttccttcccataaaccaggaaccaatcaacaatcttcctgagtggctgacaaaggacgccgagatggcgggcgtacgccggcttgatgcagatctgtggccgagcatgcaggctccgggtcattctgcagcagaccgactgaatgaaatgaagcctcatgttcttcctgatggatcactgaagcgtgcgcccaagaggaaggcggagtggcgcgccttcagcaagaaactgttcaagtccggcgatggcgccctggatctaaaccagagggctgctgccatcgccggacccctcggtgccattgggactagtgacaccggtgcatcgtctgaagagacggtttcagacagttga</cdnaseq>

Protein Sequence

<aaseq>MSSKFMITYKRKRVTSHVYTADGTNLKSSGASSSVPVSSLSPKY GVGADNNMLEEDNFSTSTKQQDVFDSREQVIKEESPKQSANAPGKERAELKSRESLSQ KEQPEICSTHTAIGDACENKLECIDGTHNQSLVSSCVHADRTTNQAEDSSASVSVGVN SHQQPNNSTRPSQSKSRFSPMLTFHRRVKNKIGLEEPAAGSCSRDNDKHCSKLSCNPP SSPLDAIPLCRQTAGSSLDVEDKVTIAGTSTGQSVIVDHLLEQKSSHIPKSSVHHMVP SQPAKDANQSSIPEEGTPVSEFTRVLETSESDARVEDSNRTPVDAIEVPKVIEVKRDE HGNGQTNCLQSPRKNINVNLLKPTNRSEAADLLESQDSTKNIPIIVLDDDSDERGKEQ EKSEVLDQLIQEKNKGRFSLGQINLNLNCAELPQERLLSLDETSVYKLKDQDQCVHER KQMSHPVERLFFTKEKDAMHGKKHHEETSTMHSSYSNLFDPAPSSSWITGNFKEPSVM PSELKFRILDKAPEFNLDLKLDSFPDSSVLALRHDKLFRGGTSSGSHFLTERLGTYSY KRHSSPWSEEELDFLWIGVRRYGTNNWNAMLRDRRLRFSNSRNAEDLAKQWDKEQRNL LGVDFLQSLRSSARGPPPPSHIPEDYVGSSSWTGCSKSPFLSAPTDLSLGDMYLRSAR TSERGQHHLSNLGMLNLHATDNVPRNLSLGGFPVASSPYGRSSSKRRRASKLPKSYYD NKAVWCQDPSERVAQFLPINQEPINNLPEWLTKDAEMAGVRRLDADLWPSMQAPGHSA ADRLNEMKPHVLPDGSLKRAPKRKAEWRAFSKKLFKSGDGALDLNQRAAAIAGPLGAI GTSDTGASSEETVSDS</aaseq>

Gene Sequence

<dnaseqindica>1067..1240#1679..2227#2709..2773#2842..3382#3746..5035#attcccttccaccctctcccaccctttaaaaaaataatacaaaaataagaaaaagaaggagaagaagggagattctctctctctctcctcctcccgctcccgaattccttctagattatcccaaattcttcgctgccaagccgccatcccgcggaatcgaggtaatggttatcttccccccaagtttgttcgttcgttcgttctagctcgattccttgagcggattgtttcgtttgatttggtttggtttcttctagcgaggggaaagggtaggaggagcctgacttgctgtggaaggtggttagtttggggggggggggggagtggttgcatgtgtttcttttgcatggaaattttgctcatgcctggtgaaagctgtggcgctgatttggagctcggagtttgtatgtagaattgtgaggattgattatgcttcgtgggatggttgcaaggaggagatgttgtactatttttggagtagcaatgctctctagtgtatctaaacaagggaaagtgggatgggggaataccacgcatccggctcaaaatgtatgaggggttatctatttagggtaatgataatgcttgattgatgggtggggtactgggttaaattttcctaatgtagatatgtgcgtcactttctgaatggggttgtcttagctatctacttcttcacaaggtgttgatctgtatttgaatggaaaaagattgaggttcttgttcgatcactcaagtttaattcactgatagagataagcagctctacttttgtaattctagaaagttgaaagagaatgttttcaccaccatcttattccctgatgtaggctttcgcttaagtacacttgtcattgttgattattatcctgctcagggatctaaataatgaaatttcattcttgcataggtgctgttccccttgcctttgcttcacctcttttgtatcactaccggaactttactcacagctgctcagttgtttctttgctgtcagcatgggggaacataccttgtacattatatacagcttgatttttgttttatcacattggctctttcagggatgagcagcaagttcatgataacctacaagaggaagcgtgttacatcacatgtctatacagctgatggcaccaatctcaagtcttctggtgcttccagtagtgttcctgtcagcagtttatccccaaaatatggggttggtgccgataataacatgttagaggaagataattttgtgaggaaccttgacttgtcacccttactatctattttagcatttgatgttactctgttacattcctaaagagggtgtacaatacataactactactgatatgcaccacttccacaaggagcgcatgaaactgccatgtcaaacagtacaacatgatgtagatattcatatctagaaatgtcactagtcatgttttttcaggaatctaatctatcgtgctttataataaaaaatcgtttaatgaaaccatgatatatgtttatgttttaaaactgctgtgtgataaagttccatgccatactaaaagtttgttctgtatcactgtggtgtgttaatgttcaatgctggagtatatactaaaattttgtatttttgtattcataagttgatctaactttattcatatctgatacttattctcatctataaaattggcagtcgacctctacaaagcaacaggatgtatttgattcaagggagcaagtcatcaaggaagaatcacctaaacaaagtgcaaatgcaccaggcaaagaacgagcggaacttaagtcacgtgaatcattatctcaaaaggaacagcctgagatatgttctactcatactgcaataggagacgcatgtgagaataaattagaatgcatagatggcacacataatcaaagtcttgtttccagttgtgtgcatgctgacaggacaactaatcaggcagaagattctagtgcctctgtttctgtgggagtaaattctcatcagcagccgaataattctaccaggcctagccaatctaagagtagatttagtcctatgcttacatttcataggcgagttaaaaacaaaataggtttggaagagcctgcagcaggaagttgttcaagagataatgacaaacattgctcaaaactaagttgcaacccaccaagttcgccactggatgctatacccttgtgtagacaaactgctggcagttctttggatgttgaagataaggtatgtttctctctcatgacctcatcttcatgtactcgtacttgtacaataacagtactgctaacttgacaaaatttttgttaagcctatccatttgttttacttgttcattctatgcgactatgtgcaatactattgcaagtgcacataccagtgtcaggaaataatgcatgttgtgactgcaatggctagaggcatccaacattgtccgtgtaacttcaactgaaagcttctatgtgattcacttatgcaccatattctagattcatgtcttttcttttataaattcttcaaataaaatccaatgtgtgtgtcattgcgactgcattctctctactgcttgcattgtctatacacaatgaggctacactcctgatagtttatgtgttcattgactatgtgcttttgcattttaccacgtagagcattcagaataactacagcttctatttaatactgaggaaaaggaatttatttacaggttactatagcgggaacaagcactggacaatctgtaattgttgaccacttgcttgaacaaaaaaggtaagacggtactatttgttttgttgatcagtacatgaacccggaactcattaatgctccttttctagttcacacattccgaaatcgtcggtacatcatatggttccctcgcagcctgctaaagatgcaaaccaaagttcaatcccagaagaaggtacaccagtatctgagttcactagggtgctagaaaccagtgagtcagatgcaagagtggaggactcaaacagaacaccagtagacgctattgaagtaccaaaagttattgaagtgaagagggatgaacatggtaatggacagactaattgtctacagtcaccaaggaaaaatataaatgttaatcttctgaaaccaacaaatagatctgaggcagctgatcttctggagtctcaagattcaacaaaaaatattccaattattgtcttggacgatgatagtgatgagaggggcaaagagcaggaaaaatcagaggtccttgatcaattaatccaggagaaaaataaaggtagattttctttggggcagatcaacctaaatctaaattgtgctgaattaccacaagagaggcttctcagtttggatgagacatcggtgtacaaactaaaagatcaggtcagaatgataatattagtctatatttcatgaagtattaccttacattttggctttagtccataatccacattcctcatcttatttaaagagagaacttctttctgcagtgaagtggtttgtacataatacattctgtaccgttcattttagtaggattgggtgttctgtttctttatacttgctctaggtgttcagtaaactgtatcctatgtgctctttatttgaaccactatctagtttacaagctattgttttgctgatacatgtgttataaaaaagtgcttacatatgctttattggataagtccttgatatttgtgctttgtattatctcaagcattttatttgcactatttacaggatcaatgtgttcatgaacgaaagcaaatgtcccatccagttgaaaggttgttttttacaaaggagaaggatgccatgcacggtaaaaaacatcatgaagaaacctcaaccatgcatagctcgtactcaaatttatttgatccagccccatcatcgtcgtggattactgggaatttcaaggaaccaagtgtcatgccatcagaactgaagttcagaatattggataaggctcctgaattcaatttagatctcaaattggatagtttcccagacagtagtgtattagcccttaggcacgataagttatttcgtggaggcacctccagtggatcccattttctgacagaaaggcttgggacatactcctacaaaaggcactcttccccgtggtcagaagaagaattggattttctttggattggagttaggaggtatgggacaaataactggaatgcaatgttgagggatagacggttacggttttctaactcaagaaatgccgaggatcttgctaagcaatgggacaaggaacaaagaaatcttctaggtgtggatttccttcaatcactcagatcctctgctcgaggtcctccaccgccttcacatataccagaagattacgttggaagcagttcttggactggatgctcaaaatctccatttctttctgctccaacagacctttcattgggtgacatgtaccttcgaagcgcccgtacttcagagagagggcagcatcatttatcaaacctgggcatgttaaacctacatgcaaccgacaatgtaccaagaaatttgtctctgggaggtttccctgttgcttcctccccatatgggagaagttctagcaagcgtaggagggcgtccaagcttcccaagtcatactatgacaacaaggcagtttggtgccaagatccatcagagagggtggctcagttccttcccataaaccaggaaccaatcaacaatcttcctgagtggctgacaaaggacgccgagatggcgggcgtacgccggcttgatgcagatctgtggccgagcatgcaggctccgggtcattctgcagcagaccgactgaatgaaatgaagcctcatgttcttcctgatggatcactgaagcgtgcgcccaagaggaaggcggagtggcgcgccttcagcaagaaactgttcaagtccggcgatggcgccctggatctaaaccagagggctgctgccatcgccggacccctcggtgccattgggactagtgacaccggtgcatcgtctgaagagacggtttcagacagttgagtgtatctctagtagtagtgatttagtccagaaaaccttgtgtcagtctgaagctgcctgtatgattccgctgctgaagctggtaaacagtagcagtatgatcaaaggtaaaatcgagttaaatttcagccaagtgattggattcagtttttgtaaacatgcatcgatctgaattctgattacatcctgtgtaatatattattggcttgtgtaatccaaaaagattgaaccatatatgctcgcatgctgaaaaggaattgcgagtttttgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0817000, RefSeq:Os02g0817000